Wall clock time and date at job start Mon Mar 30 2020 04:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.40078 * 110.99676 * 2 1 4 4 C 1.54517 * 111.51402 * 188.14237 * 3 2 1 5 5 C 1.50737 * 108.94221 * 283.98369 * 4 3 2 6 6 N 1.48067 * 112.93687 * 92.64752 * 5 4 3 7 7 C 1.46900 * 111.00297 * 192.22348 * 6 5 4 8 8 C 1.54270 * 110.03285 * 307.13823 * 7 6 5 9 9 C 1.54959 * 104.16139 * 217.13809 * 8 7 6 10 10 C 1.54882 * 102.77979 * 37.88395 * 9 8 7 11 11 C 1.53871 * 110.03521 * 189.91961 * 7 6 5 12 12 C 1.47745 * 113.78968 * 318.28909 * 6 5 4 13 13 C 1.47683 * 111.00011 * 128.63745 * 2 1 3 14 14 H 1.08997 * 109.73730 * 271.70351 * 13 2 1 15 15 C 1.50703 * 109.74096 * 32.35354 * 13 2 1 16 16 H 1.07997 * 119.99884 * 54.96254 * 15 13 2 17 17 C 1.37875 * 119.99927 * 234.97232 * 15 13 2 18 18 N 1.31513 * 120.00351 * 354.03806 * 17 15 13 19 19 Si 1.86808 * 119.99810 * 174.04274 * 17 15 13 20 20 H 1.48497 * 109.46956 * 269.99846 * 19 17 15 21 21 H 1.48504 * 109.46768 * 29.99603 * 19 17 15 22 22 H 1.48495 * 109.46977 * 149.99634 * 19 17 15 23 23 H 1.09000 * 109.46809 * 285.22928 * 1 2 3 24 24 H 1.08996 * 109.47082 * 45.22797 * 1 2 3 25 25 H 1.09005 * 109.46732 * 165.22888 * 1 2 3 26 26 H 1.09002 * 109.07450 * 308.66285 * 3 2 1 27 27 H 1.09000 * 109.07734 * 67.62107 * 3 2 1 28 28 H 1.09004 * 109.55795 * 43.81780 * 4 3 2 29 29 H 1.08998 * 109.56168 * 164.02842 * 4 3 2 30 30 H 1.08996 * 108.79212 * 213.54366 * 5 4 3 31 31 H 1.09010 * 108.78483 * 331.87687 * 5 4 3 32 32 H 1.09001 * 110.01929 * 68.52574 * 7 6 5 33 33 H 1.09004 * 110.48171 * 335.78735 * 8 7 6 34 34 H 1.09003 * 110.48540 * 98.42300 * 8 7 6 35 35 H 1.09004 * 110.71418 * 279.56936 * 9 8 7 36 36 H 1.08999 * 110.76776 * 156.22235 * 9 8 7 37 37 H 1.09002 * 110.48645 * 203.40790 * 10 9 8 38 38 H 1.08996 * 110.48514 * 80.76598 * 10 9 8 39 39 H 1.08992 * 110.03173 * 238.56734 * 11 7 6 40 40 H 1.09000 * 110.03341 * 359.97438 * 11 7 6 41 41 H 1.09000 * 108.99125 * 198.23998 * 12 6 5 42 42 H 1.09002 * 108.99127 * 79.50020 * 12 6 5 43 43 H 0.96996 * 119.99986 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9710 1.3078 0.0000 4 6 3.5026 1.3269 -0.2036 5 6 4.1725 0.9187 1.0836 6 7 4.4491 -0.5341 1.1546 7 6 4.8282 -0.9319 2.5169 8 6 5.9863 -0.0472 3.0229 9 6 6.8714 -1.0159 3.8472 10 6 6.8038 -2.3261 3.0239 11 6 5.3475 -2.3804 2.5179 12 6 3.3476 -1.3762 0.6444 13 6 1.9983 -0.8609 1.0770 14 1 2.1018 -0.2812 1.9942 15 6 1.0621 -2.0186 1.3096 16 1 0.7851 -2.6626 0.4881 17 6 0.5591 -2.2556 2.5713 18 7 0.9855 -1.5462 3.5932 19 14 -0.7282 -3.5846 2.8291 20 1 -2.0833 -2.9987 2.6693 21 1 -0.5338 -4.6630 1.8268 22 1 -0.5906 -4.1485 4.1959 23 1 -0.3633 0.2700 0.9916 24 1 -0.3633 0.7237 -0.7295 25 1 -0.3633 -0.9938 -0.2620 26 1 1.4978 1.8709 -0.8044 27 1 1.7325 1.7809 0.9526 28 1 3.7744 0.6274 -0.9942 29 1 3.8215 2.3319 -0.4802 30 1 5.1137 1.4604 1.1767 31 1 3.5264 1.1926 1.9178 32 1 3.9709 -0.8422 3.1841 33 1 6.5484 0.3622 2.1834 34 1 5.6055 0.7547 3.6554 35 1 6.4558 -1.1641 4.8439 36 1 7.8959 -0.6486 3.9053 37 1 7.0199 -3.1863 3.6575 38 1 7.4980 -2.2854 2.1846 39 1 4.7427 -2.9933 3.1861 40 1 5.3178 -2.7884 1.5076 41 1 3.4757 -2.3923 1.0177 42 1 3.3886 -1.3923 -0.4448 43 1 0.6319 -1.7132 4.4809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221595722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:45 Heat of formation + Delta-G solvation = 5.628670 kcal Electronic energy + Delta-G solvation = -20570.294609 eV Core-core repulsion = 17842.924383 eV Total energy + Delta-G solvation = -2727.370227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17165 -37.21767 -34.07775 -33.11083 -31.14667 -28.75197 -28.19993 -26.23703 -25.81442 -23.52021 -23.24239 -20.21882 -19.94232 -19.61441 -17.98617 -16.67464 -15.84837 -15.19032 -14.93847 -14.62346 -14.35197 -13.86108 -13.48438 -13.20633 -12.86186 -12.40532 -12.09723 -11.84635 -11.51495 -11.35507 -11.03534 -10.95095 -10.82119 -10.73137 -10.67226 -10.62018 -10.49527 -10.32164 -10.17974 -10.00604 -9.91356 -9.67563 -9.44916 -9.04209 -8.66149 -7.39031 -6.80004 -6.12598 -4.14686 3.24009 3.31829 3.35044 4.34173 4.68757 5.03885 5.04886 5.13433 5.34415 5.41091 5.54711 5.64568 5.87122 5.94910 6.00892 6.04556 6.09775 6.21358 6.23376 6.27618 6.31227 6.36904 6.42607 6.47820 6.49323 6.57162 6.63865 6.71825 6.75969 6.81836 6.84445 6.93552 7.02030 7.09272 7.36678 7.64322 7.77318 7.89494 8.00945 8.21178 8.42263 8.87989 9.00720 9.49628 10.95045 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.009619 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.884794 B = 2910.188115 C = 4092.564677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.567 5.567 3 C 0.078 3.922 4 C -0.117 4.117 5 C 0.064 3.936 6 N -0.545 5.545 7 C 0.085 3.915 8 C -0.118 4.118 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.112 4.112 12 C 0.070 3.930 13 C 0.179 3.821 14 H 0.049 0.951 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.068 3.932 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.272 1.272 22 H -0.287 1.287 23 H 0.018 0.982 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.003 0.997 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 2.998 -1.844 8.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.293 5.293 3 C -0.052 4.052 4 C -0.155 4.155 5 C -0.064 4.064 6 N -0.270 5.270 7 C -0.024 4.024 8 C -0.156 4.156 9 C -0.161 4.161 10 C -0.157 4.157 11 C -0.150 4.150 12 C -0.057 4.057 13 C 0.074 3.926 14 H 0.067 0.933 15 C -0.546 4.546 16 H 0.078 0.922 17 C -0.135 4.135 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.196 1.196 22 H -0.213 1.213 23 H 0.036 0.964 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.118 2.754 -2.345 8.888 hybrid contribution -1.804 -0.103 1.557 2.386 sum 6.314 2.651 -0.788 6.893 Atomic orbital electron populations 1.21849 0.88066 1.00642 0.97850 1.59461 1.07237 1.11117 1.51442 1.20938 0.94686 0.91570 0.98011 1.21524 0.95120 1.00437 0.98455 1.21693 0.98269 0.89415 0.97001 1.62419 1.40337 1.02928 1.21319 1.22165 0.96472 0.93790 0.89961 1.22485 0.96777 0.97462 0.98860 1.22454 0.98946 0.95938 0.98715 1.22307 0.97498 0.96981 0.98905 1.22151 0.94742 0.96524 1.01615 1.22229 0.88739 0.95919 0.98793 1.19717 0.92145 0.92303 0.88473 0.93289 1.20981 1.27618 1.11831 0.94187 0.92229 1.24976 0.96271 0.96113 0.96130 1.69908 1.42605 1.40765 0.99542 0.86616 0.82060 0.82047 0.77490 1.20615 1.19644 1.21287 0.96380 0.95344 0.91367 0.93223 0.97890 0.90415 0.92142 0.92496 0.95386 0.92406 0.91155 0.92655 0.91911 0.92305 0.92523 0.92010 0.92025 0.90977 0.91197 0.92291 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.38 8.65 60.07 0.52 1.90 16 2 N -0.57 -12.63 4.20 -241.36 -1.01 -13.65 16 3 C 0.08 1.54 4.95 -6.55 -0.03 1.51 16 4 C -0.12 -2.05 5.68 -27.07 -0.15 -2.20 16 5 C 0.06 1.18 4.33 -4.31 -0.02 1.16 16 6 N -0.54 -10.73 4.53 -226.36 -1.02 -11.75 16 7 C 0.08 1.62 2.56 -66.59 -0.17 1.45 16 8 C -0.12 -1.87 5.34 -25.03 -0.13 -2.00 16 9 C -0.12 -1.70 6.91 -24.70 -0.17 -1.87 16 10 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 11 C -0.11 -1.98 5.61 -25.61 -0.14 -2.12 16 12 C 0.07 1.57 4.47 -4.48 -0.02 1.55 16 13 C 0.18 4.37 2.08 -69.55 -0.14 4.22 16 14 H 0.05 1.37 5.13 -51.93 -0.27 1.10 16 15 C -0.51 -13.39 6.01 -34.44 -0.21 -13.60 16 16 H 0.06 1.60 7.58 -52.49 -0.40 1.20 16 17 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 18 N -0.89 -24.93 12.64 55.43 0.70 -24.23 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 24 H 0.03 0.53 7.76 -51.93 -0.40 0.12 16 25 H 0.07 1.52 6.90 -51.93 -0.36 1.16 16 26 H 0.05 0.88 7.78 -51.93 -0.40 0.48 16 27 H 0.00 0.07 7.59 -51.93 -0.39 -0.33 16 28 H 0.08 1.43 7.19 -51.93 -0.37 1.05 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.94 6.93 -51.93 -0.36 0.58 16 31 H 0.03 0.59 6.40 -51.92 -0.33 0.26 16 32 H 0.06 1.35 7.72 -51.93 -0.40 0.95 16 33 H 0.07 1.09 7.25 -51.93 -0.38 0.71 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.31 6.83 -51.93 -0.35 0.95 16 41 H 0.07 1.63 5.76 -51.93 -0.30 1.34 16 42 H 0.06 1.32 7.20 -51.93 -0.37 0.94 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -27.04 312.54 -10.20 -37.24 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.61 Total: 1.97 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.94 Total: -10.15 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -1.34 Total: -49.62 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.04 -10.20 -37.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.871 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds