Wall clock time and date at job start Mon Mar 30 2020 04:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.40078 * 110.99676 * 2 1 4 4 C 1.54517 * 111.51402 * 188.14237 * 3 2 1 5 5 C 1.50737 * 108.94221 * 283.98369 * 4 3 2 6 6 N 1.48067 * 112.93687 * 92.64752 * 5 4 3 7 7 C 1.46900 * 111.00297 * 192.22348 * 6 5 4 8 8 C 1.54270 * 110.03285 * 307.13823 * 7 6 5 9 9 C 1.54959 * 104.16139 * 217.13809 * 8 7 6 10 10 C 1.54882 * 102.77979 * 37.88395 * 9 8 7 11 11 C 1.53871 * 110.03521 * 189.91961 * 7 6 5 12 12 C 1.47745 * 113.78968 * 318.28909 * 6 5 4 13 13 C 1.47683 * 111.00011 * 128.63745 * 2 1 3 14 14 H 1.08997 * 109.73730 * 271.70351 * 13 2 1 15 15 C 1.50703 * 109.74096 * 32.35354 * 13 2 1 16 16 H 1.07997 * 119.99884 * 54.96254 * 15 13 2 17 17 C 1.37875 * 119.99927 * 234.97232 * 15 13 2 18 18 N 1.31513 * 120.00351 * 354.03806 * 17 15 13 19 19 Si 1.86808 * 119.99810 * 174.04274 * 17 15 13 20 20 H 1.48497 * 109.46956 * 269.99846 * 19 17 15 21 21 H 1.48504 * 109.46768 * 29.99603 * 19 17 15 22 22 H 1.48495 * 109.46977 * 149.99634 * 19 17 15 23 23 H 1.09000 * 109.46809 * 285.22928 * 1 2 3 24 24 H 1.08996 * 109.47082 * 45.22797 * 1 2 3 25 25 H 1.09005 * 109.46732 * 165.22888 * 1 2 3 26 26 H 1.09002 * 109.07450 * 308.66285 * 3 2 1 27 27 H 1.09000 * 109.07734 * 67.62107 * 3 2 1 28 28 H 1.09004 * 109.55795 * 43.81780 * 4 3 2 29 29 H 1.08998 * 109.56168 * 164.02842 * 4 3 2 30 30 H 1.08996 * 108.79212 * 213.54366 * 5 4 3 31 31 H 1.09010 * 108.78483 * 331.87687 * 5 4 3 32 32 H 1.09001 * 110.01929 * 68.52574 * 7 6 5 33 33 H 1.09004 * 110.48171 * 335.78735 * 8 7 6 34 34 H 1.09003 * 110.48540 * 98.42300 * 8 7 6 35 35 H 1.09004 * 110.71418 * 279.56936 * 9 8 7 36 36 H 1.08999 * 110.76776 * 156.22235 * 9 8 7 37 37 H 1.09002 * 110.48645 * 203.40790 * 10 9 8 38 38 H 1.08996 * 110.48514 * 80.76598 * 10 9 8 39 39 H 1.08992 * 110.03173 * 238.56734 * 11 7 6 40 40 H 1.09000 * 110.03341 * 359.97438 * 11 7 6 41 41 H 1.09000 * 108.99125 * 198.23998 * 12 6 5 42 42 H 1.09002 * 108.99127 * 79.50020 * 12 6 5 43 43 H 0.96996 * 119.99986 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9710 1.3078 0.0000 4 6 3.5026 1.3269 -0.2036 5 6 4.1725 0.9187 1.0836 6 7 4.4491 -0.5341 1.1546 7 6 4.8282 -0.9319 2.5169 8 6 5.9863 -0.0472 3.0229 9 6 6.8714 -1.0159 3.8472 10 6 6.8038 -2.3261 3.0239 11 6 5.3475 -2.3804 2.5179 12 6 3.3476 -1.3762 0.6444 13 6 1.9983 -0.8609 1.0770 14 1 2.1018 -0.2812 1.9942 15 6 1.0621 -2.0186 1.3096 16 1 0.7851 -2.6626 0.4881 17 6 0.5591 -2.2556 2.5713 18 7 0.9855 -1.5462 3.5932 19 14 -0.7282 -3.5846 2.8291 20 1 -2.0833 -2.9987 2.6693 21 1 -0.5338 -4.6630 1.8268 22 1 -0.5906 -4.1485 4.1959 23 1 -0.3633 0.2700 0.9916 24 1 -0.3633 0.7237 -0.7295 25 1 -0.3633 -0.9938 -0.2620 26 1 1.4978 1.8709 -0.8044 27 1 1.7325 1.7809 0.9526 28 1 3.7744 0.6274 -0.9942 29 1 3.8215 2.3319 -0.4802 30 1 5.1137 1.4604 1.1767 31 1 3.5264 1.1926 1.9178 32 1 3.9709 -0.8422 3.1841 33 1 6.5484 0.3622 2.1834 34 1 5.6055 0.7547 3.6554 35 1 6.4558 -1.1641 4.8439 36 1 7.8959 -0.6486 3.9053 37 1 7.0199 -3.1863 3.6575 38 1 7.4980 -2.2854 2.1846 39 1 4.7427 -2.9933 3.1861 40 1 5.3178 -2.7884 1.5076 41 1 3.4757 -2.3923 1.0177 42 1 3.3886 -1.3923 -0.4448 43 1 0.6319 -1.7132 4.4809 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221595722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:44 Heat of formation + Delta-G solvation = -11.432378 kcal Electronic energy + Delta-G solvation = -20571.034432 eV Core-core repulsion = 17842.924383 eV Total energy + Delta-G solvation = -2728.110049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80999 -38.73172 -35.65586 -35.04003 -32.91059 -30.34341 -29.66558 -27.84473 -27.59052 -25.26533 -24.98907 -21.67748 -21.52735 -21.09447 -19.64460 -18.66939 -17.41699 -16.90088 -16.52530 -16.33078 -15.95231 -15.65838 -15.10991 -14.65751 -14.31249 -14.12405 -13.73604 -13.53997 -13.21355 -13.06564 -12.82076 -12.77826 -12.52932 -12.38615 -12.17990 -11.99089 -11.92020 -11.79003 -11.67727 -11.57660 -11.38269 -11.28384 -11.13447 -11.01466 -10.73195 -9.15536 -8.63659 -8.20407 -6.28892 1.34563 1.36360 1.46320 2.35356 3.01679 3.13491 3.55902 3.74861 3.85540 4.02410 4.12977 4.14440 4.39181 4.57316 4.62138 4.67836 4.69865 4.73030 4.77294 4.81575 4.85901 4.89161 4.92283 4.95850 5.01732 5.05854 5.10193 5.13459 5.23201 5.27545 5.34383 5.35997 5.43235 5.51666 5.56138 5.59523 5.75485 5.97490 6.35851 6.45678 6.49850 6.93508 7.05511 7.38740 8.86169 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.009619 C = 0.006840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.884794 B = 2910.188115 C = 4092.564677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.568 5.568 3 C 0.073 3.927 4 C -0.109 4.109 5 C 0.065 3.935 6 N -0.535 5.535 7 C 0.084 3.916 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.110 4.110 11 C -0.112 4.112 12 C 0.083 3.917 13 C 0.187 3.813 14 H 0.010 0.990 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.021 3.979 18 N -0.921 5.921 19 Si 0.950 3.050 20 H -0.275 1.275 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.013 1.013 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.078 0.922 27 H -0.020 1.020 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.087 0.913 31 H -0.006 1.006 32 H 0.002 0.998 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.196 3.483 -3.053 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.293 5.293 3 C -0.057 4.057 4 C -0.146 4.146 5 C -0.063 4.063 6 N -0.259 5.259 7 C -0.025 4.025 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.045 4.045 13 C 0.081 3.919 14 H 0.027 0.973 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.178 4.178 18 N -0.561 5.561 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.188 1.188 22 H -0.212 1.212 23 H 0.005 0.995 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.096 0.904 27 H -0.002 1.002 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.013 0.987 32 H 0.020 0.980 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.721 3.244 -3.570 10.852 hybrid contribution -2.334 -0.202 1.909 3.022 sum 7.386 3.042 -1.661 8.159 Atomic orbital electron populations 1.21817 0.87923 1.01062 0.97082 1.59500 1.07506 1.12444 1.49839 1.21108 0.96732 0.90072 0.97803 1.21532 0.93075 1.02641 0.97398 1.21811 0.99195 0.88674 0.96595 1.62524 1.38514 1.03487 1.21425 1.22181 0.95918 0.95879 0.88558 1.22433 0.95652 0.97231 0.99504 1.22457 1.00125 0.94942 0.97893 1.22276 0.94767 0.97980 0.99712 1.22112 0.97100 0.95026 1.00799 1.21948 0.88542 0.95422 0.98603 1.19507 0.93103 0.91656 0.87667 0.97258 1.21197 1.27885 1.12332 0.94044 0.92831 1.25685 0.98061 0.98198 0.95890 1.70060 1.43816 1.42437 0.99770 0.85677 0.79684 0.79719 0.77403 1.20110 1.18815 1.21167 0.99458 0.91703 0.92381 0.90384 1.00197 0.90619 0.88203 0.89525 0.98717 0.97960 0.89765 0.92981 0.92346 0.89112 0.90961 0.90368 0.94466 0.91708 0.93167 0.92091 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.01 8.65 127.69 1.10 4.11 16 2 N -0.57 -25.43 4.20 -917.51 -3.85 -29.28 16 3 C 0.07 2.80 4.95 88.05 0.44 3.23 16 4 C -0.11 -3.57 5.68 30.38 0.17 -3.39 16 5 C 0.06 2.35 4.33 85.34 0.37 2.72 16 6 N -0.54 -21.20 4.53 -870.08 -3.94 -25.14 16 7 C 0.08 3.28 2.56 45.64 0.12 3.40 16 8 C -0.11 -3.36 5.34 31.69 0.17 -3.19 16 9 C -0.12 -2.96 6.91 31.91 0.22 -2.74 16 10 C -0.11 -2.92 6.83 31.67 0.22 -2.70 16 11 C -0.11 -4.03 5.61 31.32 0.18 -3.86 16 12 C 0.08 3.79 4.47 85.42 0.38 4.17 16 13 C 0.19 9.49 2.08 43.30 0.09 9.58 16 14 H 0.01 0.56 5.13 -2.39 -0.01 0.55 16 15 C -0.52 -28.22 6.01 25.60 0.15 -28.07 16 16 H 0.05 2.94 7.58 -2.91 -0.02 2.92 16 17 C 0.02 1.19 5.45 84.65 0.46 1.65 16 18 N -0.92 -54.29 12.64 21.45 0.27 -54.02 16 19 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 24 H 0.06 2.32 7.76 -2.39 -0.02 2.30 16 25 H 0.06 2.61 6.90 -2.38 -0.02 2.59 16 26 H 0.08 2.57 7.78 -2.39 -0.02 2.55 16 27 H -0.02 -0.87 7.59 -2.39 -0.02 -0.88 16 28 H 0.08 2.58 7.19 -2.39 -0.02 2.56 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.09 2.65 6.93 -2.39 -0.02 2.63 16 31 H -0.01 -0.24 6.40 -2.38 -0.02 -0.26 16 32 H 0.00 0.11 7.72 -2.39 -0.02 0.10 16 33 H 0.08 2.35 7.25 -2.38 -0.02 2.33 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 2.39 6.83 -2.39 -0.02 2.37 16 41 H 0.05 2.45 5.76 -2.39 -0.01 2.44 16 42 H 0.06 2.73 7.20 -2.39 -0.02 2.71 16 43 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -61.78 312.54 -0.47 -62.25 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.96 Total: 15.34 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.07 Total: -15.08 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -7.52 Total: -108.44 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.78 -0.47 -62.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.814 kcal (2) G-P(sol) polarization free energy of solvation -61.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds