Wall clock time and date at job start Mon Mar 30 2020 04:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47906 * 111.00472 * 2 1 4 4 C 1.50804 * 108.50025 * 153.79188 * 3 2 1 5 5 C 1.53688 * 112.10042 * 92.55179 * 4 3 2 6 6 N 1.48067 * 112.47186 * 318.55252 * 5 4 3 7 7 C 1.46904 * 111.00080 * 192.19482 * 6 5 4 8 8 C 1.54270 * 110.02782 * 68.10521 * 7 6 5 9 9 C 1.54967 * 104.15760 * 217.13633 * 8 7 6 10 10 C 1.54891 * 102.78028 * 37.88495 * 9 8 7 11 11 C 1.53868 * 110.03514 * 310.88852 * 7 6 5 12 12 C 1.44571 * 113.85701 * 318.31752 * 6 5 4 13 13 H 1.08994 * 109.67812 * 334.35775 * 12 6 5 14 14 C 1.50699 * 109.57415 * 214.03632 * 12 6 5 15 15 H 1.07992 * 120.00235 * 355.09248 * 14 12 6 16 16 C 1.37885 * 119.99571 * 175.08656 * 14 12 6 17 17 N 1.31511 * 120.00005 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99622 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47029 * 90.00435 * 18 16 14 20 20 H 1.48500 * 109.46857 * 210.00108 * 18 16 14 21 21 H 1.48501 * 109.47206 * 330.00152 * 18 16 14 22 22 C 1.40017 * 110.99550 * 232.03245 * 2 1 3 23 23 H 1.09002 * 109.47545 * 187.96885 * 1 2 3 24 24 H 1.09000 * 109.46453 * 307.96853 * 1 2 3 25 25 H 1.09001 * 109.46830 * 67.96119 * 1 2 3 26 26 H 1.09001 * 109.63302 * 273.49679 * 3 2 1 27 27 H 1.09002 * 109.62660 * 34.09089 * 3 2 1 28 28 H 1.09004 * 108.95089 * 331.87524 * 4 3 2 29 29 H 1.09001 * 108.88442 * 213.18394 * 4 3 2 30 30 H 1.09003 * 108.88475 * 197.78410 * 5 4 3 31 31 H 1.09004 * 108.88455 * 79.32736 * 5 4 3 32 32 H 1.09000 * 110.01452 * 189.49015 * 7 6 5 33 33 H 1.08998 * 110.48647 * 335.77681 * 8 7 6 34 34 H 1.08999 * 110.48892 * 98.42500 * 8 7 6 35 35 H 1.09004 * 110.71721 * 279.57448 * 9 8 7 36 36 H 1.08996 * 110.76322 * 156.22185 * 9 8 7 37 37 H 1.08995 * 110.48793 * 203.40887 * 10 9 8 38 38 H 1.09004 * 110.59390 * 80.81506 * 10 9 8 39 39 H 1.09006 * 110.03423 * 238.56754 * 11 7 6 40 40 H 1.09006 * 110.03373 * 359.94480 * 11 7 6 41 41 H 0.97003 * 119.99502 * 180.02562 * 17 16 14 42 42 H 1.08996 * 108.96240 * 308.76576 * 22 2 1 43 43 H 1.09002 * 108.95737 * 67.51492 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 3.3685 1.3676 0.6316 5 6 4.4848 1.1999 -0.4114 6 7 4.1427 0.2027 -1.4511 7 6 5.3221 -0.1457 -2.2547 8 6 6.3374 -0.9244 -1.3929 9 6 7.7176 -0.4171 -1.8820 10 6 7.4588 1.0888 -2.1357 11 6 6.0348 1.1335 -2.7271 12 6 3.4992 -0.9840 -0.9339 13 1 3.7843 -1.1318 0.1077 14 6 3.9191 -2.1813 -1.7471 15 1 4.5404 -2.0497 -2.6206 16 6 3.5102 -3.4446 -1.3758 17 7 2.7532 -3.6047 -0.3123 18 14 4.0313 -4.9287 -2.3834 19 1 5.3142 -5.4592 -1.8561 20 1 2.9864 -5.9801 -2.2929 21 1 4.2076 -4.5268 -3.8021 22 6 1.9707 -0.8042 -1.0306 23 1 -0.3634 -1.0177 0.1425 24 1 -0.3632 0.6323 0.8102 25 1 -0.3633 0.3856 -0.9526 26 1 2.0720 1.7451 -1.0247 27 1 1.3366 2.0273 0.5755 28 1 3.4222 0.5437 1.3433 29 1 3.5201 2.3061 1.1648 30 1 5.3963 0.8827 0.0952 31 1 4.6666 2.1616 -0.8913 32 1 5.0238 -0.7461 -3.1142 33 1 6.1983 -0.6928 -0.3369 34 1 6.2411 -1.9964 -1.5652 35 1 8.0084 -0.9198 -2.8044 36 1 8.4752 -0.5543 -1.1105 37 1 8.1810 1.4850 -2.8495 38 1 7.5014 1.6480 -1.2010 39 1 6.0832 1.1537 -3.8159 40 1 5.5050 2.0130 -2.3610 41 1 2.4659 -4.4936 -0.0509 42 1 1.4950 -1.7835 -0.9791 43 1 1.7295 -0.3436 -1.9886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221595923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:55 Heat of formation + Delta-G solvation = 25.906714 kcal Electronic energy + Delta-G solvation = -20785.200152 eV Core-core repulsion = 18058.709248 eV Total energy + Delta-G solvation = -2726.490905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31738 -37.14356 -34.03882 -33.12129 -31.12255 -28.54217 -27.94264 -26.61513 -25.29297 -24.51565 -22.45928 -20.37912 -20.10373 -19.39074 -18.03496 -16.36109 -16.03792 -14.71996 -14.55317 -14.27587 -14.22369 -14.12866 -13.85587 -13.17111 -12.69342 -12.60143 -12.29102 -11.85288 -11.54119 -11.32789 -11.09735 -10.95524 -10.76295 -10.69249 -10.51400 -10.46104 -10.36845 -10.26999 -10.06706 -9.84588 -9.76285 -9.65460 -9.37951 -8.60160 -8.44079 -7.16315 -6.87163 -5.99094 -4.03484 3.29147 3.37070 3.39311 4.41244 4.93222 4.96054 5.25326 5.28801 5.33899 5.49418 5.57593 5.78292 5.93873 5.98064 6.03360 6.07406 6.12317 6.19016 6.22450 6.27169 6.29927 6.35368 6.42227 6.45454 6.48084 6.53764 6.62554 6.73737 6.81555 6.85650 7.00442 7.04014 7.17391 7.23534 7.42378 7.81778 7.89900 8.09396 8.15370 8.43598 8.49747 8.83740 9.07425 9.60933 11.07183 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.013070 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.077236 B = 2141.835144 C = 3862.810685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.549 5.549 3 C 0.072 3.928 4 C -0.117 4.117 5 C 0.062 3.938 6 N -0.545 5.545 7 C 0.103 3.897 8 C -0.138 4.138 9 C -0.129 4.129 10 C -0.122 4.122 11 C -0.131 4.131 12 C 0.231 3.769 13 H 0.021 0.979 14 C -0.525 4.525 15 H 0.075 0.925 16 C 0.064 3.936 17 N -0.878 5.878 18 Si 0.885 3.115 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.088 3.912 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.011 0.989 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.259 0.741 42 H 0.089 0.911 43 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 8.467 -0.851 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.272 5.272 3 C -0.055 4.055 4 C -0.155 4.155 5 C -0.066 4.066 6 N -0.269 5.269 7 C -0.005 4.005 8 C -0.177 4.177 9 C -0.167 4.167 10 C -0.160 4.160 11 C -0.169 4.169 12 C 0.123 3.877 13 H 0.039 0.961 14 C -0.564 4.564 15 H 0.093 0.907 16 C -0.139 4.139 17 N -0.516 5.516 18 Si 0.713 3.287 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.042 4.042 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 2.808 8.325 -0.625 8.809 hybrid contribution 0.482 -0.961 -0.644 1.253 sum 3.291 7.365 -1.269 8.166 Atomic orbital electron populations 1.22235 0.89060 1.01444 0.98415 1.59356 1.05669 1.11159 1.51059 1.21653 0.95077 0.89602 0.99172 1.21399 0.94714 1.01057 0.98331 1.22308 0.96011 0.95983 0.92307 1.61087 1.25557 1.16073 1.24210 1.22167 0.88453 0.92995 0.96910 1.23018 0.92806 1.02147 0.99704 1.22548 0.98437 0.95473 1.00235 1.22339 0.96862 0.96881 0.99875 1.22444 0.95073 0.99701 0.99641 1.18889 0.88887 0.84732 0.95157 0.96150 1.21682 1.31832 0.90549 1.12327 0.90736 1.24977 0.95093 0.98776 0.95011 1.69998 1.34870 1.22415 1.24336 0.86713 0.78273 0.82987 0.80773 1.20777 1.21329 1.19893 1.21141 0.98827 0.96116 0.88099 0.91919 0.93026 0.97085 0.94107 0.92955 0.90969 0.92743 0.95606 0.92767 0.89066 0.92376 0.89934 0.92204 0.92849 0.92880 0.92486 0.92658 0.91329 0.93079 0.89269 0.98706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.48 60.06 0.57 1.24 16 2 N -0.55 -11.61 4.32 -248.07 -1.07 -12.68 16 3 C 0.07 1.33 5.34 -4.37 -0.02 1.31 16 4 C -0.12 -2.08 5.36 -27.47 -0.15 -2.23 16 5 C 0.06 1.13 4.54 -2.82 -0.01 1.12 16 6 N -0.54 -11.44 3.98 -218.38 -0.87 -12.30 16 7 C 0.10 2.01 2.47 -66.59 -0.16 1.85 16 8 C -0.14 -2.66 4.79 -25.03 -0.12 -2.78 16 9 C -0.13 -2.02 6.91 -24.70 -0.17 -2.19 16 10 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 11 C -0.13 -2.10 5.99 -25.62 -0.15 -2.26 16 12 C 0.23 5.61 1.32 -69.48 -0.09 5.52 16 13 H 0.02 0.58 6.94 -51.93 -0.36 0.22 16 14 C -0.53 -13.54 5.95 -34.44 -0.20 -13.75 16 15 H 0.07 1.89 4.33 -52.49 -0.23 1.66 16 16 C 0.06 1.71 5.18 -17.82 -0.09 1.62 16 17 N -0.88 -24.55 11.84 55.43 0.66 -23.90 16 18 Si 0.88 20.73 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.09 2.11 4.30 -6.75 -0.03 2.08 16 23 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 24 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.04 0.79 7.57 -51.93 -0.39 0.39 16 27 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 28 H 0.07 1.46 7.23 -51.93 -0.38 1.09 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.49 6.17 -51.93 -0.32 0.17 16 31 H 0.05 0.91 6.25 -51.93 -0.32 0.59 16 32 H 0.09 1.96 5.89 -51.93 -0.31 1.66 16 33 H 0.06 1.20 6.20 -51.93 -0.32 0.88 16 34 H 0.08 1.78 6.50 -51.93 -0.34 1.45 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.10 5.71 -51.93 -0.30 0.80 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 42 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 43 H -0.01 -0.13 8.06 -51.93 -0.42 -0.55 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -26.95 305.36 -9.84 -36.79 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.32 Total: 2.19 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.81 Total: -10.40 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -1.29 Total: -48.88 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.95 -9.84 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221595923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.697 kcal (2) G-P(sol) polarization free energy of solvation -26.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds