Wall clock time and date at job start Mon Mar 30 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99911 * 2 1 4 4 C 1.52998 * 109.47247 * 288.24211 * 3 2 1 5 5 C 1.50693 * 115.54958 * 305.54957 * 4 3 2 6 6 H 1.08004 * 120.00230 * 144.41479 * 5 4 3 7 7 C 1.37880 * 119.99933 * 324.40862 * 5 4 3 8 8 N 1.31510 * 120.00076 * 349.28362 * 7 5 4 9 9 Si 1.86803 * 119.99819 * 169.28081 * 7 5 4 10 10 H 1.48507 * 109.47059 * 90.00306 * 9 7 5 11 11 H 1.48498 * 109.46946 * 209.99882 * 9 7 5 12 12 H 1.48498 * 109.47490 * 330.00405 * 9 7 5 13 13 C 1.53003 * 117.49781 * 159.87370 * 4 3 2 14 14 C 1.53002 * 117.49998 * 91.21508 * 4 3 2 15 15 C 1.46897 * 110.99725 * 123.95141 * 2 1 3 16 16 H 1.09000 * 109.02812 * 187.09253 * 15 2 1 17 17 C 1.54525 * 109.04032 * 68.21385 * 15 2 1 18 18 C 1.50536 * 108.86801 * 162.20948 * 17 15 2 19 19 C 1.53916 * 112.94444 * 91.74616 * 18 17 15 20 20 N 1.47943 * 113.32957 * 317.75086 * 19 18 17 21 21 C 1.44299 * 113.64774 * 318.13994 * 20 19 18 22 22 C 1.45873 * 109.04552 * 306.04836 * 15 2 1 23 23 H 1.09001 * 109.47609 * 305.72378 * 1 2 3 24 24 H 1.09001 * 109.47182 * 65.72290 * 1 2 3 25 25 H 1.09001 * 109.47159 * 185.71758 * 1 2 3 26 26 H 1.09004 * 109.46894 * 48.24128 * 3 2 1 27 27 H 1.08994 * 109.47162 * 168.23915 * 3 2 1 28 28 H 0.96999 * 120.00251 * 185.03507 * 8 7 5 29 29 H 1.08995 * 117.50159 * 0.02562 * 13 4 3 30 30 H 1.09003 * 117.49466 * 145.02235 * 13 4 3 31 31 H 1.08999 * 117.50548 * 214.98279 * 14 4 3 32 32 H 1.09009 * 117.49742 * 359.97438 * 14 4 3 33 33 H 1.09003 * 109.56706 * 282.01615 * 17 15 2 34 34 H 1.08991 * 109.57559 * 42.38990 * 17 15 2 35 35 H 1.09000 * 108.79101 * 330.85406 * 18 17 15 36 36 H 1.09001 * 108.69702 * 212.57792 * 18 17 15 37 37 H 1.09001 * 108.71756 * 196.75478 * 19 18 17 38 38 H 1.09000 * 108.71350 * 78.74526 * 19 18 17 39 39 H 1.00909 * 110.99892 * 192.18347 * 20 19 18 40 40 H 1.09000 * 109.69015 * 335.69444 * 21 20 19 41 41 H 1.08996 * 109.72731 * 215.12294 * 21 20 19 42 42 H 1.08998 * 108.84418 * 302.87978 * 22 15 2 43 43 H 1.08994 * 108.84459 * 61.34076 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7566 2.0094 -1.3700 5 6 2.2919 1.2377 -2.5485 6 1 1.7497 1.2334 -3.4825 7 6 3.4740 0.5373 -2.4344 8 7 4.2402 0.7078 -1.3792 9 14 3.9872 -0.6541 -3.7786 10 1 4.7996 0.0644 -4.7931 11 1 4.7931 -1.7516 -3.1860 12 1 2.7770 -1.2219 -4.4253 13 6 1.7870 3.5369 -1.4529 14 6 0.4558 2.7900 -1.5687 15 6 1.9953 -0.7659 1.1376 16 1 3.0773 -0.6410 1.1799 17 6 1.6698 -2.2624 0.9316 18 6 2.5573 -3.0818 1.8300 19 6 1.9189 -3.3740 3.1996 20 7 1.2235 -2.2058 3.7831 21 6 1.9436 -0.9653 3.6252 22 6 1.4084 -0.2517 2.3701 23 1 -0.3634 0.6000 0.8343 24 1 -0.3633 0.4225 -0.9368 25 1 -0.3633 -1.0226 0.1024 26 1 1.4866 1.9559 0.7666 27 1 3.0648 1.3501 0.2095 28 1 5.1053 0.2716 -1.3324 29 1 1.9775 4.0873 -0.5316 30 1 2.1938 3.9836 -2.3601 31 1 -0.0126 2.7458 -2.5519 32 1 -0.2301 2.8487 -0.7235 33 1 0.6254 -2.4469 1.1834 34 1 1.8505 -2.5357 -0.1079 35 1 3.4920 -2.5432 1.9862 36 1 2.7765 -4.0282 1.3357 37 1 2.7002 -3.6957 3.8883 38 1 1.2014 -4.1865 3.0848 39 1 0.9926 -2.3691 4.7518 40 1 3.0073 -1.1708 3.5055 41 1 1.7874 -0.3352 4.5007 42 1 1.6305 0.8125 2.4486 43 1 0.3272 -0.3828 2.3265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226468520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:55 Heat of formation + Delta-G solvation = 39.324121 kcal Electronic energy + Delta-G solvation = -20360.604601 eV Core-core repulsion = 17634.695519 eV Total energy + Delta-G solvation = -2725.909082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.24003 -36.93994 -35.01340 -32.20226 -31.91914 -30.63520 -26.62721 -25.46446 -25.32854 -24.60131 -22.16676 -21.04034 -19.74143 -19.09258 -18.61060 -16.63541 -16.00431 -15.32797 -14.60705 -14.36743 -14.20812 -13.87620 -13.68523 -13.20955 -12.97507 -12.75165 -12.50107 -12.09642 -11.56885 -11.33377 -11.09986 -10.95376 -10.88730 -10.83462 -10.67191 -10.42751 -10.33013 -10.29797 -10.04293 -9.85698 -9.73650 -9.09892 -8.89362 -8.50467 -8.23703 -7.86447 -6.96249 -5.81475 -3.81753 3.39483 3.46627 3.52539 4.28211 4.55163 4.88043 5.01935 5.17990 5.27222 5.35495 5.39044 5.52062 5.67503 5.75094 5.84387 5.92493 6.06197 6.12838 6.20765 6.24873 6.32324 6.32601 6.42790 6.45700 6.56579 6.65382 6.73054 6.76680 6.81329 6.85041 6.94164 7.05113 7.08230 7.26662 7.32203 7.44567 7.51020 7.71335 8.13188 8.35411 8.41701 8.68607 9.11113 9.77239 11.21224 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.008234 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.712112 B = 3399.666055 C = 4228.678805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.497 5.497 3 C 0.104 3.896 4 C 0.070 3.930 5 C -0.471 4.471 6 H 0.052 0.948 7 C 0.090 3.910 8 N -0.877 5.877 9 Si 0.888 3.112 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.210 4.210 14 C -0.218 4.218 15 C 0.094 3.906 16 H 0.073 0.927 17 C -0.098 4.098 18 C -0.119 4.119 19 C 0.068 3.932 20 N -0.698 5.698 21 C 0.072 3.928 22 C -0.145 4.145 23 H 0.006 0.994 24 H 0.067 0.933 25 H 0.050 0.950 26 H -0.015 1.015 27 H 0.112 0.888 28 H 0.255 0.745 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.066 0.934 39 H 0.338 0.662 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -5.578 9.851 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.218 5.218 3 C -0.023 4.023 4 C 0.069 3.931 5 C -0.508 4.508 6 H 0.070 0.930 7 C -0.112 4.112 8 N -0.515 5.515 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.248 4.248 14 C -0.255 4.255 15 C -0.015 4.015 16 H 0.091 0.909 17 C -0.136 4.136 18 C -0.157 4.157 19 C -0.060 4.060 20 N -0.330 5.330 21 C -0.059 4.059 22 C -0.184 4.184 23 H 0.025 0.975 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.003 0.997 27 H 0.130 0.870 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.155 0.845 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.672 -5.831 8.945 11.291 hybrid contribution 0.646 -0.199 0.708 0.979 sum -3.026 -6.029 9.653 11.777 Atomic orbital electron populations 1.22368 0.90023 0.99532 0.99976 1.61962 1.05250 1.15143 1.39474 1.21748 1.01807 0.85336 0.93418 1.18943 0.91870 0.87476 0.94767 1.20266 1.06669 1.28389 0.95499 0.92989 1.24700 0.96232 0.95396 0.94907 1.69783 1.09655 1.43622 1.28415 0.86681 0.78274 0.81471 0.81910 1.21401 1.21356 1.20009 1.22971 1.01439 1.00395 1.00014 1.22927 0.91479 1.11338 0.99755 1.20569 0.99532 0.93145 0.88282 0.90878 1.21254 0.99168 0.94163 0.99009 1.21362 0.99368 1.00492 0.94507 1.22207 0.96033 0.92355 0.95416 1.59026 1.49354 1.02580 1.22003 1.21528 0.96027 0.90350 0.97988 1.21304 1.02210 0.99232 0.95699 0.97543 0.91434 0.93142 0.99717 0.86988 0.93467 0.92178 0.90611 0.91035 0.91988 0.91916 0.91259 0.92315 0.91885 0.95987 0.91584 0.84466 0.94158 0.92457 0.92598 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 8.10 60.06 0.49 1.07 16 2 N -0.50 -10.70 4.25 -238.03 -1.01 -11.71 16 3 C 0.10 2.44 3.43 -3.82 -0.01 2.42 16 4 C 0.07 1.75 1.57 -155.66 -0.24 1.51 16 5 C -0.47 -12.91 8.73 -34.44 -0.30 -13.21 16 6 H 0.05 1.45 7.84 -52.48 -0.41 1.04 16 7 C 0.09 2.45 5.18 -17.82 -0.09 2.35 16 8 N -0.88 -23.90 10.77 55.43 0.60 -23.30 16 9 Si 0.89 21.51 29.55 -169.99 -5.02 16.49 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C -0.21 -4.90 9.96 -26.69 -0.27 -5.16 16 14 C -0.22 -4.87 8.59 -26.69 -0.23 -5.10 16 15 C 0.09 1.75 1.78 -70.29 -0.13 1.62 16 16 H 0.07 1.53 7.26 -51.93 -0.38 1.16 16 17 C -0.10 -1.65 4.42 -27.16 -0.12 -1.77 16 18 C -0.12 -1.68 5.27 -27.49 -0.14 -1.83 16 19 C 0.07 0.82 6.44 -2.77 -0.02 0.80 16 20 N -0.70 -8.61 6.17 -113.79 -0.70 -9.31 16 21 C 0.07 0.97 6.15 -4.70 -0.03 0.94 16 22 C -0.14 -2.37 4.02 -29.59 -0.12 -2.49 16 23 H 0.01 0.12 6.70 -51.93 -0.35 -0.23 16 24 H 0.07 1.41 6.71 -51.93 -0.35 1.06 16 25 H 0.05 0.91 6.58 -51.93 -0.34 0.57 16 26 H -0.02 -0.34 6.99 -51.93 -0.36 -0.71 16 27 H 0.11 2.90 5.64 -51.93 -0.29 2.61 16 28 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 31 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 32 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.06 1.04 6.93 -51.93 -0.36 0.68 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.88 6.66 -51.93 -0.35 0.54 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.34 3.39 8.89 -39.29 -0.35 3.04 16 40 H 0.04 0.57 6.79 -51.93 -0.35 0.22 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.98 6.68 -51.93 -0.35 0.63 16 43 H 0.07 1.18 6.34 -51.93 -0.33 0.86 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -27.38 317.31 -10.08 -37.46 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.51 Total: 4.44 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.22 Total: -18.85 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -1.12 Total: -44.32 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.38 -10.08 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226468520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.783 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds