Wall clock time and date at job start Mon Mar 30 2020 04:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00371 * 2 1 4 4 C 1.53008 * 109.46869 * 298.73360 * 3 2 1 5 5 C 1.50697 * 115.54829 * 306.20613 * 4 3 2 6 6 H 1.08008 * 119.99613 * 143.89203 * 5 4 3 7 7 C 1.37879 * 120.00229 * 323.89083 * 5 4 3 8 8 N 1.31510 * 119.99916 * 1.68945 * 7 5 4 9 9 Si 1.86793 * 119.99792 * 181.69419 * 7 5 4 10 10 H 1.48501 * 109.47385 * 60.00074 * 9 7 5 11 11 H 1.48509 * 109.47081 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47376 * 300.00020 * 9 7 5 13 13 C 1.52997 * 117.49591 * 160.54003 * 4 3 2 14 14 C 1.52998 * 117.49996 * 91.88038 * 4 3 2 15 15 C 1.46900 * 111.00072 * 123.95539 * 2 1 3 16 16 H 1.08999 * 108.84108 * 291.52178 * 15 2 1 17 17 C 1.45878 * 108.94161 * 50.18441 * 15 2 1 18 18 C 1.54304 * 112.19252 * 181.82393 * 17 15 2 19 19 C 1.50452 * 108.49522 * 281.46312 * 18 17 15 20 20 N 1.48002 * 112.82219 * 93.72423 * 19 18 17 21 21 C 1.47996 * 114.63403 * 318.08968 * 20 19 18 22 22 C 1.50448 * 112.82981 * 318.09376 * 21 20 19 23 23 H 1.08996 * 109.47019 * 297.75558 * 1 2 3 24 24 H 1.09007 * 109.46957 * 57.75413 * 1 2 3 25 25 H 1.08997 * 109.47061 * 177.74759 * 1 2 3 26 26 H 1.09002 * 109.47266 * 58.72846 * 3 2 1 27 27 H 1.08998 * 109.47649 * 178.73205 * 3 2 1 28 28 H 0.97002 * 120.00218 * 185.03428 * 8 7 5 29 29 H 1.09004 * 117.50436 * 359.97438 * 13 4 3 30 30 H 1.09002 * 117.49844 * 145.02153 * 13 4 3 31 31 H 1.08996 * 117.49903 * 214.98255 * 14 4 3 32 32 H 1.09000 * 117.49604 * 359.97438 * 14 4 3 33 33 H 1.09005 * 108.93727 * 302.52025 * 17 15 2 34 34 H 1.09000 * 108.93878 * 61.11879 * 17 15 2 35 35 H 1.08999 * 109.63517 * 41.15950 * 18 17 15 36 36 H 1.09000 * 109.63697 * 161.76330 * 18 17 15 37 37 H 1.08997 * 108.81229 * 214.58997 * 19 18 17 38 38 H 1.09002 * 108.81125 * 332.86197 * 19 18 17 39 39 H 1.00900 * 110.99654 * 191.34363 * 20 19 18 40 40 H 1.08999 * 108.80607 * 78.95713 * 21 20 19 41 41 H 1.08994 * 108.81174 * 197.33499 * 21 20 19 42 42 H 1.08999 * 109.62969 * 334.02617 * 22 21 20 43 43 H 1.08995 * 109.62872 * 213.42788 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5308 2.0960 -1.2650 5 6 1.8400 1.3982 -2.5644 6 1 1.1389 1.4486 -3.3844 7 6 3.0178 0.6956 -2.7064 8 7 3.8561 0.6065 -1.6971 9 14 3.4228 -0.1295 -4.3326 10 1 3.4846 0.8950 -5.4057 11 1 4.7362 -0.8145 -4.2266 12 1 2.3698 -1.1247 -4.6584 13 6 1.5701 3.6255 -1.2576 14 6 0.2277 2.8935 -1.1839 15 6 1.9954 -0.7660 1.1376 16 1 1.7683 -0.2293 2.0587 17 6 1.3403 -2.0689 1.1749 18 6 1.8071 -2.9218 2.3731 19 6 3.1500 -3.5144 2.0427 20 7 4.2774 -2.6903 2.5329 21 6 4.1067 -1.2332 2.3382 22 6 3.5269 -0.8878 0.9936 23 1 -0.3633 0.4786 0.9094 24 1 -0.3633 0.5484 -0.8692 25 1 -0.3633 -1.0268 -0.0404 26 1 1.6277 1.9018 0.8784 27 1 3.0849 1.3424 0.0227 28 1 4.7167 0.1754 -1.8178 29 1 1.9264 4.1155 -0.3515 30 1 1.8190 4.1270 -2.1928 31 1 -0.4059 2.9138 -2.0706 32 1 -0.2989 2.9016 -0.2296 33 1 0.2626 -1.9211 1.2445 34 1 1.5634 -2.6036 0.2517 35 1 1.8925 -2.2929 3.2592 36 1 1.0890 -3.7213 2.5555 37 1 3.2172 -4.5051 2.4922 38 1 3.2329 -3.6155 0.9605 39 1 5.1528 -3.0070 2.1436 40 1 3.4453 -0.8499 3.1151 41 1 5.0787 -0.7494 2.4348 42 1 3.7661 -1.6750 0.2786 43 1 3.9390 0.0608 0.6498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226468523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:58 Heat of formation + Delta-G solvation = 46.479539 kcal Electronic energy + Delta-G solvation = -20514.383067 eV Core-core repulsion = 17788.784267 eV Total energy + Delta-G solvation = -2725.598800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.21436 -37.00013 -34.84584 -32.20293 -31.90227 -30.62277 -27.01434 -25.48207 -25.21152 -24.15298 -22.04223 -21.11892 -19.46243 -19.38890 -18.77679 -16.42024 -15.96897 -15.10180 -14.98661 -14.63443 -14.06264 -13.88889 -13.35384 -12.97409 -12.88900 -12.51027 -12.28300 -12.09820 -11.69882 -11.43270 -11.27417 -11.15417 -10.90184 -10.72298 -10.58062 -10.41672 -10.40441 -10.26949 -10.14258 -9.87956 -9.49785 -9.25474 -8.77465 -8.51606 -8.03195 -8.00069 -6.99561 -5.81737 -3.89101 3.36678 3.40198 3.44649 4.43071 4.48751 4.78368 5.11401 5.18275 5.28649 5.37874 5.63834 5.66000 5.70815 5.91357 5.99761 6.01323 6.13117 6.15485 6.20859 6.22907 6.25723 6.34537 6.39704 6.46698 6.56757 6.65085 6.67044 6.72408 6.81495 6.83455 6.97224 6.99335 7.17143 7.27852 7.37747 7.40009 7.63949 7.74274 8.09247 8.34291 8.38563 8.62479 9.04718 9.71086 11.15619 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.008580 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.512988 B = 3262.771230 C = 3911.399567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.494 5.494 3 C 0.105 3.895 4 C 0.066 3.934 5 C -0.474 4.474 6 H 0.051 0.949 7 C 0.089 3.911 8 N -0.867 5.867 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.279 1.279 13 C -0.210 4.210 14 C -0.219 4.219 15 C 0.097 3.903 16 H 0.014 0.986 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.067 3.933 20 N -0.705 5.705 21 C 0.060 3.940 22 C -0.135 4.135 23 H -0.002 1.002 24 H 0.077 0.923 25 H 0.051 0.949 26 H -0.024 1.024 27 H 0.124 0.876 28 H 0.254 0.746 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.338 0.662 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 -5.141 7.229 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.216 5.216 3 C -0.022 4.022 4 C 0.066 3.934 5 C -0.511 4.511 6 H 0.069 0.931 7 C -0.114 4.114 8 N -0.504 5.504 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.205 1.205 13 C -0.249 4.249 14 C -0.257 4.257 15 C -0.012 4.012 16 H 0.031 0.969 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.062 4.062 20 N -0.337 5.337 21 C -0.069 4.069 22 C -0.174 4.174 23 H 0.016 0.984 24 H 0.096 0.904 25 H 0.070 0.930 26 H -0.007 1.007 27 H 0.142 0.858 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.154 0.846 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.048 -5.491 7.468 9.329 hybrid contribution -0.079 0.147 -1.132 1.144 sum -1.127 -5.344 6.336 8.365 Atomic orbital electron populations 1.22464 0.90083 1.00083 0.99717 1.61768 1.04940 1.15093 1.39809 1.21907 1.03439 0.84993 0.91876 1.18993 0.91748 0.87246 0.95462 1.20249 1.04189 1.30631 0.96038 0.93090 1.24703 0.96515 0.94578 0.95595 1.69767 1.08001 1.43820 1.28856 0.86732 0.77305 0.79654 0.84490 1.20835 1.21559 1.20495 1.23004 1.01327 1.00660 0.99888 1.22951 0.91715 1.11553 0.99467 1.20424 0.95349 0.93734 0.91672 0.96867 1.20816 1.00091 0.96711 0.98129 1.21366 0.95815 0.99419 0.98956 1.21557 0.90866 0.95902 0.97869 1.60292 1.04775 1.03683 1.64912 1.21797 1.00672 0.87053 0.97336 1.22014 0.94490 1.05038 0.95812 0.98350 0.90439 0.93028 1.00654 0.85833 0.93543 0.92056 0.90544 0.90972 0.91990 0.92197 0.91389 0.91299 0.91718 0.92074 0.94919 0.84565 0.92077 0.91966 0.92025 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 8.43 60.06 0.51 1.00 16 2 N -0.49 -10.59 4.11 -238.17 -0.98 -11.57 16 3 C 0.10 2.42 3.75 -3.82 -0.01 2.41 16 4 C 0.07 1.61 1.27 -155.66 -0.20 1.41 16 5 C -0.47 -12.61 8.73 -34.44 -0.30 -12.91 16 6 H 0.05 1.39 7.81 -52.48 -0.41 0.98 16 7 C 0.09 2.33 5.30 -17.82 -0.09 2.24 16 8 N -0.87 -22.25 9.01 55.43 0.50 -21.75 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.21 -4.78 9.96 -26.70 -0.27 -5.04 16 14 C -0.22 -4.82 8.25 -26.69 -0.22 -5.04 16 15 C 0.10 1.79 1.54 -70.40 -0.11 1.68 16 16 H 0.01 0.26 7.50 -51.93 -0.39 -0.13 16 17 C -0.12 -1.95 4.11 -29.42 -0.12 -2.07 16 18 C -0.12 -1.61 5.63 -27.32 -0.15 -1.76 16 19 C 0.07 0.91 6.01 -4.49 -0.03 0.88 16 20 N -0.71 -9.85 6.89 -114.91 -0.79 -10.64 16 21 C 0.06 0.93 6.01 -4.49 -0.03 0.90 16 22 C -0.13 -2.46 4.73 -27.32 -0.13 -2.59 16 23 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 24 H 0.08 1.65 5.97 -51.92 -0.31 1.34 16 25 H 0.05 0.93 6.02 -51.93 -0.31 0.62 16 26 H -0.02 -0.56 8.08 -51.93 -0.42 -0.98 16 27 H 0.12 3.06 3.88 -51.93 -0.20 2.86 16 28 H 0.25 6.38 8.32 -40.82 -0.34 6.04 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.95 5.88 -51.93 -0.31 0.64 16 34 H 0.07 1.21 7.52 -51.93 -0.39 0.82 16 35 H 0.07 0.99 7.08 -51.93 -0.37 0.62 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.48 6.59 -51.93 -0.34 0.14 16 39 H 0.34 4.30 8.91 -39.29 -0.35 3.95 16 40 H 0.06 0.96 6.59 -51.93 -0.34 0.61 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.22 7.08 -51.93 -0.37 0.85 16 43 H 0.11 2.20 4.77 -51.93 -0.25 1.96 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -25.93 311.71 -10.02 -35.95 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.27 Total: 6.24 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.15 Total: -18.89 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -1.27 Total: -43.96 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -25.93 -10.02 -35.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226468523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.428 kcal (2) G-P(sol) polarization free energy of solvation -25.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds