Wall clock time and date at job start Mon Mar 30 2020 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99911 * 2 1 4 4 C 1.53008 * 109.46643 * 77.50630 * 3 2 1 5 5 H 1.08995 * 109.45408 * 59.68834 * 4 3 2 6 6 C 1.53031 * 109.46135 * 179.66782 * 4 3 2 7 7 C 1.53116 * 109.27883 * 179.19137 * 6 4 3 8 8 C 1.53120 * 109.16438 * 302.34271 * 7 6 4 9 9 C 1.53042 * 109.27486 * 57.65220 * 8 7 6 10 10 N 1.46843 * 109.52286 * 300.82370 * 9 8 7 11 11 C 1.46900 * 111.00010 * 236.05122 * 2 1 3 12 12 C 1.53001 * 109.47213 * 277.88936 * 11 2 1 13 13 C 1.50703 * 115.55151 * 148.74421 * 12 11 2 14 14 H 1.07996 * 120.00024 * 143.46862 * 13 12 11 15 15 C 1.37875 * 119.99722 * 323.46414 * 13 12 11 16 16 N 1.31521 * 120.00332 * 339.18775 * 15 13 12 17 17 Si 1.86798 * 119.99957 * 159.18138 * 15 13 12 18 18 H 1.48511 * 109.46949 * 90.00216 * 17 15 13 19 19 H 1.48497 * 109.47444 * 210.00173 * 17 15 13 20 20 H 1.48496 * 109.47342 * 330.00493 * 17 15 13 21 21 C 1.53000 * 117.50014 * 3.03202 * 12 11 2 22 22 C 1.53003 * 60.00116 * 252.51355 * 21 12 11 23 23 H 1.08999 * 109.47189 * 52.88930 * 1 2 3 24 24 H 1.09003 * 109.46606 * 172.88426 * 1 2 3 25 25 H 1.08992 * 109.46962 * 292.88375 * 1 2 3 26 26 H 1.08991 * 109.47621 * 317.50505 * 3 2 1 27 27 H 1.09004 * 109.47364 * 197.49925 * 3 2 1 28 28 H 1.09002 * 109.50807 * 59.25079 * 6 4 3 29 29 H 1.08995 * 109.50659 * 299.13219 * 6 4 3 30 30 H 1.09007 * 109.52392 * 62.25090 * 7 6 4 31 31 H 1.09002 * 109.52886 * 182.43893 * 7 6 4 32 32 H 1.08997 * 109.50538 * 177.59430 * 8 7 6 33 33 H 1.08996 * 109.50260 * 297.71632 * 8 7 6 34 34 H 1.09002 * 109.46390 * 60.84137 * 9 8 7 35 35 H 1.09000 * 109.46550 * 180.81797 * 9 8 7 36 36 H 1.00897 * 111.00605 * 297.64227 * 10 9 8 37 37 H 1.09007 * 109.47319 * 37.88610 * 11 2 1 38 38 H 1.09000 * 109.47215 * 157.88660 * 11 2 1 39 39 H 0.97003 * 119.99634 * 185.02265 * 16 15 13 40 40 H 1.08995 * 117.49629 * 0.02562 * 21 12 11 41 41 H 1.08991 * 117.50127 * 145.02322 * 21 12 11 42 42 H 1.09001 * 117.49775 * 252.51411 * 22 21 12 43 43 H 1.09003 * 117.50125 * 107.48444 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8868 1.9593 1.4084 5 1 2.4596 1.3452 2.1033 6 6 2.4428 3.3850 1.4101 7 6 2.3136 3.9764 2.8166 8 6 0.8432 3.9435 3.2425 9 6 0.3335 2.5015 3.1877 10 7 0.4779 1.9816 1.8220 11 6 1.9955 -0.7659 -1.1377 12 6 1.9934 -2.2567 -0.7936 13 6 1.7825 -3.1919 -1.9563 14 1 2.3061 -4.1357 -1.9921 15 6 0.9210 -2.8425 -2.9745 16 7 -0.0075 -1.9342 -2.7677 17 14 1.0725 -3.6590 -4.6477 18 1 0.2238 -4.8772 -4.6827 19 1 0.6255 -2.7138 -5.7022 20 1 2.4887 -4.0354 -4.8884 21 6 1.4103 -2.6686 0.5597 22 6 2.9219 -2.7238 0.3293 23 1 -0.3633 0.6200 -0.8195 24 1 -0.3633 -1.0198 -0.1273 25 1 -0.3633 0.3996 0.9467 26 1 1.4183 1.9822 -0.6941 27 1 3.0407 1.3594 -0.3090 28 1 1.8794 3.9963 0.7052 29 1 3.4928 3.3665 1.1183 30 1 2.9085 3.3880 3.5152 31 1 2.6686 5.0069 2.8126 32 1 0.7504 4.3239 4.2598 33 1 0.2546 4.5635 2.5664 34 1 0.9135 1.8849 3.8743 35 1 -0.7173 2.4765 3.4764 36 1 -0.0814 2.5129 1.1717 37 1 1.3685 -0.5941 -2.0126 38 1 3.0145 -0.4439 -1.3521 39 1 -0.6593 -1.7407 -3.4596 40 1 1.0278 -1.8775 1.2046 41 1 0.8738 -3.6160 0.6091 42 1 3.3798 -3.7077 0.2271 43 1 3.5341 -1.9690 0.8228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234283887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:00 Heat of formation + Delta-G solvation = 32.697021 kcal Electronic energy + Delta-G solvation = -19819.891731 eV Core-core repulsion = 17093.695276 eV Total energy + Delta-G solvation = -2726.196455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.09862 -37.20551 -34.56229 -32.06723 -31.62199 -31.16243 -26.64943 -26.28646 -25.16851 -23.27414 -22.16507 -20.80073 -20.38345 -20.27150 -18.49029 -16.10510 -15.48006 -15.14140 -14.88349 -14.59077 -14.32110 -14.13500 -13.92660 -13.33012 -13.09588 -12.61358 -12.14003 -11.97348 -11.95906 -11.32949 -11.29812 -11.20214 -10.98658 -10.81888 -10.71320 -10.62036 -10.45188 -10.42463 -10.26543 -10.04483 -9.85888 -9.02924 -8.95977 -8.44461 -7.98044 -7.74998 -7.06696 -5.98827 -3.93522 3.29839 3.38229 3.44201 4.39574 4.43086 4.64818 4.78532 4.94630 4.99434 5.11496 5.35546 5.41154 5.52586 5.54884 5.72470 5.77121 5.82447 5.92938 5.94185 5.99135 6.06565 6.11729 6.22245 6.39263 6.49659 6.59162 6.76769 6.82575 6.89799 7.01023 7.23245 7.24257 7.35304 7.46472 7.53680 7.61313 7.68571 7.75919 8.02077 8.25180 8.34430 8.69467 9.00245 9.59295 11.01880 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.005201 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.387721 B = 5382.442469 C = 5541.137575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.525 5.525 3 C 0.062 3.938 4 C 0.097 3.903 5 H 0.085 0.915 6 C -0.153 4.153 7 C -0.117 4.117 8 C -0.158 4.158 9 C 0.055 3.945 10 N -0.663 5.663 11 C 0.081 3.919 12 C 0.057 3.943 13 C -0.493 4.493 14 H 0.058 0.942 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.881 3.119 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.188 4.188 22 C -0.208 4.208 23 H 0.001 0.999 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.335 0.665 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.259 0.741 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 12.125 8.742 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.248 5.248 3 C -0.067 4.067 4 C -0.013 4.013 5 H 0.103 0.897 6 C -0.193 4.193 7 C -0.155 4.155 8 C -0.197 4.197 9 C -0.074 4.074 10 N -0.291 5.291 11 C -0.046 4.046 12 C 0.056 3.944 13 C -0.531 4.531 14 H 0.076 0.924 15 C -0.130 4.130 16 N -0.503 5.503 17 Si 0.709 3.291 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.226 4.226 22 C -0.246 4.246 23 H 0.019 0.981 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.425 11.359 9.231 14.706 hybrid contribution 0.009 0.961 -1.800 2.041 sum 1.434 12.320 7.431 14.459 Atomic orbital electron populations 1.22628 0.86742 1.02504 0.99726 1.61902 1.08842 1.09670 1.44378 1.22124 0.99295 0.91365 0.93929 1.21634 0.88739 0.93125 0.97846 0.89691 1.22278 1.01897 0.98356 0.96743 1.21528 0.96501 1.00427 0.97018 1.22282 0.96746 0.99388 1.01305 1.22035 1.00946 0.92414 0.92041 1.60880 1.08968 1.56518 1.02783 1.21812 0.96944 0.92764 0.93042 1.18876 0.96728 0.91613 0.87206 1.20578 1.25913 1.03246 1.03356 0.92355 1.24929 0.94683 0.94996 0.98388 1.69998 1.13717 1.33241 1.33375 0.86772 0.78608 0.79187 0.84581 1.20793 1.21204 1.19796 1.22913 0.93552 1.00847 1.05269 1.22762 0.93246 0.99989 1.08585 0.98063 0.90528 0.89926 0.95979 0.91726 0.92342 0.91582 0.91938 0.92524 0.91984 0.92362 0.91038 0.91116 0.84719 0.89871 0.94979 0.93105 0.89429 0.92170 0.91918 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 7.87 60.07 0.47 1.13 16 2 N -0.52 -10.62 3.40 -242.91 -0.83 -11.45 16 3 C 0.06 1.04 4.81 -3.82 -0.02 1.02 16 4 C 0.10 1.34 2.69 -67.72 -0.18 1.16 16 5 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 6 C -0.15 -1.73 5.36 -26.66 -0.14 -1.87 16 7 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 8 C -0.16 -1.51 6.08 -26.65 -0.16 -1.67 16 9 C 0.06 0.61 6.55 -3.83 -0.03 0.59 16 10 N -0.66 -8.78 3.44 -106.76 -0.37 -9.15 16 11 C 0.08 1.93 4.92 -3.82 -0.02 1.91 16 12 C 0.06 1.44 2.12 -155.66 -0.33 1.11 16 13 C -0.49 -13.72 8.98 -34.44 -0.31 -14.03 16 14 H 0.06 1.64 7.90 -52.49 -0.41 1.22 16 15 C 0.07 1.98 4.96 -17.82 -0.09 1.89 16 16 N -0.87 -23.75 11.23 55.43 0.62 -23.12 16 17 Si 0.88 20.90 29.59 -169.99 -5.03 15.87 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 C -0.19 -4.54 8.46 -26.73 -0.23 -4.76 16 22 C -0.21 -4.86 9.94 -26.73 -0.27 -5.13 16 23 H 0.00 0.02 7.92 -51.93 -0.41 -0.39 16 24 H 0.08 1.84 6.61 -51.93 -0.34 1.50 16 25 H 0.08 1.53 5.46 -51.93 -0.28 1.24 16 26 H 0.02 0.37 7.82 -51.93 -0.41 -0.03 16 27 H 0.06 1.07 7.50 -51.93 -0.39 0.68 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.33 4.31 8.66 -39.29 -0.34 3.97 16 37 H 0.08 2.20 5.17 -51.93 -0.27 1.93 16 38 H 0.03 0.74 7.45 -51.93 -0.39 0.35 16 39 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 40 H 0.09 2.06 5.96 -51.93 -0.31 1.75 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -27.20 324.16 -9.93 -37.13 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.76 Total: 5.81 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.45 Total: -19.98 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.57 Total: -43.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.20 -9.93 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234283887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.823 kcal (2) G-P(sol) polarization free energy of solvation -27.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds