Wall clock time and date at job start Mon Mar 30 2020 04:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00064 * 2 1 4 4 C 1.53003 * 109.47218 * 71.38598 * 3 2 1 5 5 H 1.08997 * 109.46016 * 295.93203 * 4 3 2 6 6 C 1.53032 * 109.46474 * 175.94984 * 4 3 2 7 7 C 1.53122 * 109.27802 * 180.80515 * 6 4 3 8 8 C 1.53123 * 109.16206 * 57.65496 * 7 6 4 9 9 C 1.53039 * 109.27695 * 302.34570 * 8 7 6 10 10 N 1.46848 * 109.45963 * 55.90488 * 4 3 2 11 11 C 1.46907 * 110.99657 * 236.04833 * 2 1 3 12 12 C 1.53001 * 109.47210 * 288.20575 * 11 2 1 13 13 C 1.50697 * 115.55297 * 305.05447 * 12 11 2 14 14 H 1.07994 * 119.99894 * 114.62404 * 13 12 11 15 15 C 1.37882 * 119.99505 * 294.89941 * 13 12 11 16 16 N 1.31518 * 119.99402 * 182.70765 * 15 13 12 17 17 Si 1.86792 * 120.00320 * 2.70928 * 15 13 12 18 18 H 1.48500 * 109.47302 * 93.70057 * 17 15 13 19 19 H 1.48504 * 109.47353 * 213.70171 * 17 15 13 20 20 H 1.48502 * 109.47220 * 333.70047 * 17 15 13 21 21 C 1.53000 * 117.49390 * 90.72232 * 12 11 2 22 22 C 1.52999 * 117.49636 * 159.38048 * 12 11 2 23 23 H 1.09000 * 109.46926 * 189.00327 * 1 2 3 24 24 H 1.08998 * 109.46736 * 308.99994 * 1 2 3 25 25 H 1.08996 * 109.47384 * 69.00549 * 1 2 3 26 26 H 1.09002 * 109.47726 * 191.38567 * 3 2 1 27 27 H 1.09002 * 109.47380 * 311.38931 * 3 2 1 28 28 H 1.08998 * 109.50522 * 300.74599 * 6 4 3 29 29 H 1.08997 * 109.50364 * 60.86953 * 6 4 3 30 30 H 1.08995 * 109.52462 * 177.55794 * 7 6 4 31 31 H 1.09006 * 109.51956 * 297.68712 * 7 6 4 32 32 H 1.08997 * 109.50331 * 62.28261 * 8 7 6 33 33 H 1.08995 * 109.50488 * 182.36642 * 8 7 6 34 34 H 1.08997 * 109.46116 * 179.19413 * 9 8 7 35 35 H 1.08999 * 109.46462 * 299.17433 * 9 8 7 36 36 H 1.00904 * 111.00463 * 305.85828 * 10 4 3 37 37 H 1.09009 * 109.46593 * 168.20475 * 11 2 1 38 38 H 1.08992 * 109.47172 * 48.21361 * 11 2 1 39 39 H 0.96998 * 119.99366 * 179.97438 * 16 15 13 40 40 H 1.08997 * 117.49748 * 214.99985 * 21 12 11 41 41 H 1.09001 * 117.50211 * 0.02562 * 21 12 11 42 42 H 1.09006 * 117.49884 * 359.97438 * 22 12 11 43 43 H 1.08996 * 117.49723 * 144.97478 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7484 2.0125 1.3671 5 1 0.6756 2.1002 1.5385 6 6 2.3855 3.4035 1.4005 7 6 2.1531 4.0330 2.7769 8 6 2.7405 3.1170 3.8542 9 6 2.0931 1.7343 3.7496 10 7 2.3445 1.1746 2.4154 11 6 1.9954 -0.7660 -1.1377 12 6 1.7574 -2.2588 -0.9013 13 6 2.3036 -2.8074 0.3916 14 1 1.6287 -3.1790 1.1484 15 6 3.6647 -2.8296 0.6106 16 7 4.1443 -3.3569 1.7159 17 14 4.8274 -2.1107 -0.6624 18 1 5.1252 -0.6971 -0.3186 19 1 6.0897 -2.8929 -0.6776 20 1 4.1919 -2.1707 -2.0032 21 6 0.4514 -2.8578 -1.4272 22 6 1.7763 -3.1793 -2.1233 23 1 -0.3633 -1.0150 0.1608 24 1 -0.3633 0.6467 0.7986 25 1 -0.3634 0.3682 -0.9594 26 1 3.0662 1.3496 -0.2029 27 1 1.4914 1.9541 -0.7710 28 1 3.4562 3.3180 1.2157 29 1 1.9319 4.0301 0.6326 30 1 2.6424 5.0060 2.8198 31 1 1.0831 4.1556 2.9454 32 1 3.8168 3.0268 3.7079 33 1 2.5411 3.5392 4.8391 34 1 2.5195 1.0755 4.5060 35 1 1.0185 1.8233 3.9094 36 1 2.0099 0.2247 2.3529 37 1 3.0648 -0.5798 -1.2373 38 1 1.4863 -0.4569 -2.0505 39 1 5.1019 -3.3728 1.8697 40 1 -0.0127 -3.6487 -0.8380 41 1 -0.2380 -2.1885 -1.9419 42 1 1.9578 -2.7213 -3.0957 43 1 2.1841 -4.1815 -1.9921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234301220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:03 Heat of formation + Delta-G solvation = 28.129609 kcal Electronic energy + Delta-G solvation = -20057.256095 eV Core-core repulsion = 17330.861582 eV Total energy + Delta-G solvation = -2726.394513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.84030 -37.47142 -35.13905 -31.90899 -31.63513 -31.12304 -27.31340 -26.47832 -25.15120 -23.38802 -22.33208 -21.43570 -20.41671 -19.36604 -18.79351 -16.33866 -15.86150 -15.29027 -15.03642 -14.59882 -14.27369 -13.80585 -13.78286 -13.39241 -13.14809 -12.80626 -12.71654 -12.48651 -11.99503 -11.79427 -11.53915 -11.49210 -11.18113 -10.83251 -10.67292 -10.65252 -10.53032 -10.31529 -10.20977 -10.09069 -9.82837 -9.37601 -8.87097 -8.45840 -8.30318 -7.85800 -7.49799 -5.90490 -3.87281 3.43316 3.50988 3.52487 4.39838 4.60059 4.61551 5.01568 5.03742 5.08056 5.18865 5.38327 5.43608 5.55744 5.60294 5.70209 5.74462 5.83093 5.85378 5.90881 5.96242 6.02942 6.05190 6.08863 6.10401 6.20439 6.23619 6.28389 6.34409 6.41671 6.43680 6.53484 6.58357 6.66952 6.80933 7.14644 7.20497 7.58038 7.75020 7.84749 7.98023 8.13245 8.70318 9.11138 9.74974 11.22263 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.007712 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.268224 B = 3629.614489 C = 4151.369933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.509 5.509 3 C 0.057 3.943 4 C 0.100 3.900 5 H 0.030 0.970 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.117 4.117 9 C 0.059 3.941 10 N -0.676 5.676 11 C 0.094 3.906 12 C 0.013 3.987 13 C -0.455 4.455 14 H 0.073 0.927 15 C 0.086 3.914 16 N -0.901 5.901 17 Si 0.871 3.129 18 H -0.278 1.278 19 H -0.300 1.300 20 H -0.260 1.260 21 C -0.187 4.187 22 C -0.198 4.198 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.010 0.990 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.372 0.628 37 H 0.061 0.939 38 H 0.010 0.990 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 12.569 -1.127 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.231 5.231 3 C -0.071 4.071 4 C -0.011 4.011 5 H 0.047 0.953 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.070 4.070 10 N -0.312 5.312 11 C -0.033 4.033 12 C 0.012 3.988 13 C -0.492 4.492 14 H 0.091 0.909 15 C -0.116 4.116 16 N -0.539 5.539 17 Si 0.701 3.299 18 H -0.205 1.205 19 H -0.227 1.227 20 H -0.185 1.185 21 C -0.224 4.224 22 C -0.237 4.237 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.195 0.805 37 H 0.079 0.921 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.326 12.561 -0.647 13.301 hybrid contribution -0.483 0.607 -1.310 1.523 sum -4.809 13.168 -1.958 14.154 Atomic orbital electron populations 1.22413 0.88507 1.02649 0.98302 1.61599 1.06499 1.10819 1.44211 1.22221 1.00651 0.89368 0.94903 1.21349 0.95234 0.92379 0.92155 0.95258 1.21620 1.01791 0.95274 0.96542 1.21529 1.00298 0.98228 0.95395 1.21595 1.01123 0.95108 0.97714 1.21855 0.97119 0.95817 0.92255 1.60145 1.63130 1.07140 1.00773 1.21887 0.98192 0.94663 0.88552 1.19373 0.96254 0.88870 0.94350 1.20030 0.91775 1.38885 0.98523 0.90917 1.24755 0.97858 0.94230 0.94731 1.69877 1.13022 1.45448 1.25602 0.87027 0.80238 0.79255 0.83392 1.20454 1.22734 1.18450 1.22788 0.90807 1.03839 1.04971 1.23067 1.01763 1.02129 0.96720 0.90412 0.92873 0.97116 0.90626 0.95627 0.91176 0.92341 0.92375 0.92711 0.91277 0.92353 0.90999 0.96224 0.80469 0.92065 0.97183 0.92956 0.89926 0.91571 0.91764 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.07 60.07 0.54 1.04 16 2 N -0.51 -9.80 3.44 -242.91 -0.84 -10.64 16 3 C 0.06 0.97 4.66 -3.83 -0.02 0.96 16 4 C 0.10 1.55 2.42 -67.72 -0.16 1.38 16 5 H 0.03 0.45 6.74 -51.93 -0.35 0.10 16 6 C -0.11 -1.51 5.37 -26.65 -0.14 -1.65 16 7 C -0.12 -1.38 6.00 -26.60 -0.16 -1.54 16 8 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 9 C 0.06 0.88 6.55 -3.83 -0.03 0.85 16 10 N -0.68 -11.93 6.50 -106.76 -0.69 -12.62 16 11 C 0.09 1.99 4.32 -3.82 -0.02 1.97 16 12 C 0.01 0.29 0.56 -155.66 -0.09 0.21 16 13 C -0.45 -12.40 9.12 -34.44 -0.31 -12.72 16 14 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 15 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 16 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 17 Si 0.87 21.98 24.72 -169.99 -4.20 17.78 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.26 -6.19 5.89 56.52 0.33 -5.86 16 21 C -0.19 -3.77 8.53 -26.69 -0.23 -3.99 16 22 C -0.20 -4.24 8.67 -26.69 -0.23 -4.47 16 23 H 0.08 1.40 6.64 -51.93 -0.34 1.06 16 24 H 0.05 0.81 6.46 -51.93 -0.34 0.48 16 25 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 26 H 0.08 1.41 7.74 -51.93 -0.40 1.01 16 27 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.37 7.54 7.93 -39.29 -0.31 7.23 16 37 H 0.06 1.37 4.10 -51.92 -0.21 1.16 16 38 H 0.01 0.20 7.91 -51.93 -0.41 -0.21 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -28.85 323.22 -9.09 -37.94 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.90 Total: 6.57 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.10 Total: -17.27 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.76 Total: -49.89 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.20 Total: 17.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.85 -9.09 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234301220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.072 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds