Wall clock time and date at job start Mon Mar 30 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 110.99777 * 2 1 4 4 C 1.53004 * 109.46889 * 287.75104 * 3 2 1 5 5 H 1.09002 * 109.50457 * 57.12638 * 4 3 2 6 6 C 1.53126 * 109.50164 * 297.05461 * 4 3 2 7 7 C 1.53116 * 109.16046 * 182.36548 * 6 4 3 8 8 C 1.53042 * 109.27924 * 57.65398 * 7 6 4 9 9 N 1.46856 * 109.51743 * 300.81853 * 8 7 6 10 10 C 1.46847 * 111.19766 * 61.74528 * 9 8 7 11 11 C 1.46901 * 111.00239 * 123.94784 * 2 1 3 12 12 C 1.52999 * 109.47116 * 72.90614 * 11 2 1 13 13 C 1.50701 * 115.54680 * 54.35982 * 12 11 2 14 14 H 1.08001 * 120.00573 * 268.85145 * 13 12 11 15 15 C 1.37881 * 119.99418 * 88.85577 * 13 12 11 16 16 N 1.31515 * 120.00384 * 3.17559 * 15 13 12 17 17 Si 1.86802 * 119.99583 * 183.18303 * 15 13 12 18 18 H 1.48500 * 109.47166 * 89.99678 * 17 15 13 19 19 H 1.48506 * 109.46769 * 209.99643 * 17 15 13 20 20 H 1.48497 * 109.47388 * 329.99676 * 17 15 13 21 21 C 1.53000 * 117.49986 * 268.69416 * 12 11 2 22 22 C 1.52996 * 117.50035 * 200.03537 * 12 11 2 23 23 H 1.09003 * 109.47441 * 54.75722 * 1 2 3 24 24 H 1.09009 * 109.46896 * 174.75131 * 1 2 3 25 25 H 1.08996 * 109.47553 * 294.74693 * 1 2 3 26 26 H 1.08992 * 109.47365 * 167.75121 * 3 2 1 27 27 H 1.09000 * 109.47052 * 47.74625 * 3 2 1 28 28 H 1.09004 * 109.51636 * 302.26885 * 6 4 3 29 29 H 1.08993 * 109.52500 * 62.39154 * 6 4 3 30 30 H 1.08998 * 109.50327 * 177.59287 * 7 6 4 31 31 H 1.08996 * 109.50520 * 297.67497 * 7 6 4 32 32 H 1.08995 * 109.46322 * 60.83370 * 8 7 6 33 33 H 1.08995 * 109.46461 * 180.81753 * 8 7 6 34 34 H 1.00891 * 111.00366 * 297.64232 * 9 8 7 35 35 H 1.09003 * 109.46090 * 178.23262 * 10 9 8 36 36 H 1.08999 * 109.46390 * 58.27196 * 10 9 8 37 37 H 1.08999 * 109.47275 * 192.90938 * 11 2 1 38 38 H 1.09001 * 109.47132 * 312.91121 * 11 2 1 39 39 H 0.96993 * 119.99802 * 185.00872 * 16 15 13 40 40 H 1.08996 * 117.50091 * 359.97438 * 21 12 11 41 41 H 1.09001 * 117.49775 * 145.01786 * 21 12 11 42 42 H 1.09004 * 117.49586 * 214.98366 * 22 12 11 43 43 H 1.09000 * 117.49766 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7675 2.0052 -1.3739 5 1 0.7047 1.9798 -1.6146 6 6 2.5502 1.2242 -2.4332 7 6 2.3644 1.8995 -3.7948 8 6 2.8323 3.3539 -3.7057 9 7 2.0527 4.0581 -2.6794 10 6 2.2526 3.4564 -1.3549 11 6 1.9955 -0.7659 1.1377 12 6 1.7824 -2.2603 0.8887 13 6 2.3377 -2.7887 -0.4088 14 1 1.7181 -2.8089 -1.2931 15 6 3.6370 -3.2466 -0.4668 16 7 4.3717 -3.2805 0.6235 17 14 4.3539 -3.8184 -2.0943 18 1 4.9906 -2.6689 -2.7859 19 1 5.3712 -4.8711 -1.8444 20 1 3.2698 -4.3700 -2.9462 21 6 0.4866 -2.8856 1.4092 22 6 1.8166 -3.1907 2.1028 23 1 -0.3634 0.5930 -0.8393 24 1 -0.3633 -1.0235 -0.0940 25 1 -0.3634 0.4302 0.9332 26 1 3.0631 1.3509 0.2180 27 1 1.4804 1.9583 0.7607 28 1 3.6085 1.2164 -2.1719 29 1 2.1789 0.2006 -2.4795 30 1 2.9537 1.3730 -4.5456 31 1 1.3111 1.8720 -4.0739 32 1 3.8891 3.3798 -3.4403 33 1 2.6877 3.8417 -4.6696 34 1 1.0737 4.0816 -2.9219 35 1 1.6874 4.0187 -0.6116 36 1 3.3122 3.4819 -1.1006 37 1 3.0608 -0.5644 1.2495 38 1 1.4725 -0.4709 2.0474 39 1 5.3066 -3.5333 0.5706 40 1 -0.2139 -2.2323 1.9294 41 1 0.0361 -3.6794 0.8134 42 1 2.2406 -4.1851 1.9630 43 1 1.9913 -2.7381 3.0789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234326946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:20 Heat of formation + Delta-G solvation = 18.560575 kcal Electronic energy + Delta-G solvation = -19818.449287 eV Core-core repulsion = 17091.639830 eV Total energy + Delta-G solvation = -2726.809457 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.02698 -37.33073 -35.14180 -31.83611 -31.50760 -31.09831 -26.95637 -26.11990 -25.11875 -23.51938 -22.30443 -21.00419 -20.77226 -19.64229 -18.89352 -15.95751 -15.81955 -15.26368 -14.74404 -14.60217 -14.38278 -14.14028 -13.81352 -13.36849 -13.18853 -12.74126 -12.47231 -12.00451 -11.89008 -11.60686 -11.36776 -11.10914 -11.02665 -10.91730 -10.84155 -10.77348 -10.60052 -10.40227 -10.24744 -10.04968 -10.04533 -9.31614 -8.83986 -8.29783 -8.21977 -7.95932 -7.39031 -5.89221 -3.91196 3.36679 3.43179 3.46231 4.34237 4.50599 4.60659 4.89121 5.11316 5.21941 5.37228 5.38944 5.43454 5.53049 5.54486 5.66311 5.81937 5.87393 5.91833 5.94729 6.01424 6.08645 6.20300 6.22670 6.26922 6.36152 6.38139 6.50354 6.57685 6.65477 6.70178 6.79972 6.86075 6.97711 7.03350 7.20697 7.38003 7.53989 7.63354 7.90323 8.02617 8.05052 8.61897 9.07555 9.71244 11.19792 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.007355 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.670792 B = 3805.996486 C = 4778.350336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.512 5.512 3 C 0.063 3.937 4 C -0.113 4.113 5 H 0.065 0.935 6 C -0.105 4.105 7 C -0.159 4.159 8 C 0.056 3.944 9 N -0.687 5.687 10 C 0.060 3.940 11 C 0.105 3.895 12 C 0.051 3.949 13 C -0.457 4.457 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.276 1.276 21 C -0.219 4.219 22 C -0.150 4.150 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.336 0.664 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.000 1.000 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 11.140 -3.821 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.235 5.235 3 C -0.066 4.066 4 C -0.134 4.134 5 H 0.083 0.917 6 C -0.143 4.143 7 C -0.198 4.198 8 C -0.074 4.074 9 N -0.314 5.314 10 C -0.070 4.070 11 C -0.023 4.023 12 C 0.051 3.949 13 C -0.495 4.495 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.528 5.528 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.217 1.217 20 H -0.201 1.201 21 C -0.256 4.256 22 C -0.188 4.188 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.026 0.974 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.018 0.982 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.953 11.306 -4.085 12.654 hybrid contribution -0.282 -0.821 -0.121 0.876 sum -4.235 10.485 -4.206 12.065 Atomic orbital electron populations 1.22372 0.88931 1.02324 0.98110 1.61728 1.06258 1.10639 1.44826 1.22064 1.00074 0.89723 0.94757 1.21832 0.99961 0.95315 0.96285 0.91708 1.21476 1.00161 1.00565 0.92082 1.22294 1.01133 0.97386 0.98959 1.22024 0.98472 0.91994 0.94886 1.60749 1.13780 1.54299 1.02579 1.22059 1.01727 0.92531 0.90676 1.21710 0.98537 0.94606 0.87424 1.18808 0.93328 0.88496 0.94305 1.20243 0.97056 1.38606 0.93634 0.92475 1.24905 0.97446 0.95416 0.95629 1.70007 1.06988 1.49316 1.26461 0.86724 0.78922 0.78321 0.84796 1.20770 1.21670 1.20095 1.23066 0.91634 1.04520 1.06378 1.22475 0.98372 1.02305 0.95688 0.92973 0.90698 0.97421 0.91236 0.96138 0.92354 0.89560 0.91798 0.92493 0.91103 0.91370 0.84676 0.91272 0.91012 0.91255 0.98171 0.93431 0.92361 0.90739 0.89593 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.12 60.06 0.55 1.08 16 2 N -0.51 -9.85 3.76 -242.91 -0.91 -10.76 16 3 C 0.06 1.02 4.40 -3.82 -0.02 1.01 16 4 C -0.11 -1.59 2.33 -90.54 -0.21 -1.80 16 5 H 0.06 0.91 6.59 -51.93 -0.34 0.57 16 6 C -0.11 -1.64 5.12 -26.61 -0.14 -1.77 16 7 C -0.16 -2.02 6.08 -26.65 -0.16 -2.18 16 8 C 0.06 0.64 6.56 -3.83 -0.03 0.62 16 9 N -0.69 -7.96 6.87 -113.82 -0.78 -8.74 16 10 C 0.06 0.74 5.84 -3.84 -0.02 0.72 16 11 C 0.10 2.30 4.89 -3.82 -0.02 2.28 16 12 C 0.05 1.24 1.30 -155.66 -0.20 1.04 16 13 C -0.46 -12.30 8.54 -34.44 -0.29 -12.59 16 14 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 15 C 0.07 1.83 5.42 -17.82 -0.10 1.74 16 16 N -0.89 -25.20 12.39 55.43 0.69 -24.51 16 17 Si 0.88 21.44 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C -0.22 -4.80 8.50 -26.70 -0.23 -5.02 16 22 C -0.15 -3.59 9.02 -26.70 -0.24 -3.83 16 23 H 0.05 0.80 6.49 -51.93 -0.34 0.46 16 24 H 0.07 1.40 6.47 -51.92 -0.34 1.06 16 25 H 0.01 0.12 8.08 -51.93 -0.42 -0.30 16 26 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 27 H 0.02 0.31 8.05 -51.93 -0.42 -0.10 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.61 7.77 -51.93 -0.40 1.21 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.34 3.52 8.86 -39.30 -0.35 3.17 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.66 7.70 -51.93 -0.40 1.26 16 38 H 0.00 0.00 7.94 -51.93 -0.41 -0.41 16 39 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.09 2.23 8.01 -51.93 -0.42 1.81 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -27.52 332.20 -10.13 -37.66 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.01 Total: 3.66 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.11 Total: -18.72 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -1.01 Total: -44.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.52 -10.13 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234326946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.216 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds