Wall clock time and date at job start Mon Mar 30 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 110.99777 * 2 1 4 4 C 1.53004 * 109.46889 * 287.75104 * 3 2 1 5 5 H 1.09002 * 109.50457 * 57.12638 * 4 3 2 6 6 C 1.53126 * 109.50164 * 297.05461 * 4 3 2 7 7 C 1.53116 * 109.16046 * 182.36548 * 6 4 3 8 8 C 1.53042 * 109.27924 * 57.65398 * 7 6 4 9 9 N 1.46856 * 109.51743 * 300.81853 * 8 7 6 10 10 C 1.46847 * 111.19766 * 61.74528 * 9 8 7 11 11 C 1.46901 * 111.00239 * 123.94784 * 2 1 3 12 12 C 1.52999 * 109.47116 * 72.90614 * 11 2 1 13 13 C 1.50701 * 115.54680 * 54.35982 * 12 11 2 14 14 H 1.08001 * 120.00573 * 268.85145 * 13 12 11 15 15 C 1.37881 * 119.99418 * 88.85577 * 13 12 11 16 16 N 1.31515 * 120.00384 * 3.17559 * 15 13 12 17 17 Si 1.86802 * 119.99583 * 183.18303 * 15 13 12 18 18 H 1.48500 * 109.47166 * 89.99678 * 17 15 13 19 19 H 1.48506 * 109.46769 * 209.99643 * 17 15 13 20 20 H 1.48497 * 109.47388 * 329.99676 * 17 15 13 21 21 C 1.53000 * 117.49986 * 268.69416 * 12 11 2 22 22 C 1.52996 * 117.50035 * 200.03537 * 12 11 2 23 23 H 1.09003 * 109.47441 * 54.75722 * 1 2 3 24 24 H 1.09009 * 109.46896 * 174.75131 * 1 2 3 25 25 H 1.08996 * 109.47553 * 294.74693 * 1 2 3 26 26 H 1.08992 * 109.47365 * 167.75121 * 3 2 1 27 27 H 1.09000 * 109.47052 * 47.74625 * 3 2 1 28 28 H 1.09004 * 109.51636 * 302.26885 * 6 4 3 29 29 H 1.08993 * 109.52500 * 62.39154 * 6 4 3 30 30 H 1.08998 * 109.50327 * 177.59287 * 7 6 4 31 31 H 1.08996 * 109.50520 * 297.67497 * 7 6 4 32 32 H 1.08995 * 109.46322 * 60.83370 * 8 7 6 33 33 H 1.08995 * 109.46461 * 180.81753 * 8 7 6 34 34 H 1.00891 * 111.00366 * 297.64232 * 9 8 7 35 35 H 1.09003 * 109.46090 * 178.23262 * 10 9 8 36 36 H 1.08999 * 109.46390 * 58.27196 * 10 9 8 37 37 H 1.08999 * 109.47275 * 192.90938 * 11 2 1 38 38 H 1.09001 * 109.47132 * 312.91121 * 11 2 1 39 39 H 0.96993 * 119.99802 * 185.00872 * 16 15 13 40 40 H 1.08996 * 117.50091 * 359.97438 * 21 12 11 41 41 H 1.09001 * 117.49775 * 145.01786 * 21 12 11 42 42 H 1.09004 * 117.49586 * 214.98366 * 22 12 11 43 43 H 1.09000 * 117.49766 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7675 2.0052 -1.3739 5 1 0.7047 1.9798 -1.6146 6 6 2.5502 1.2242 -2.4332 7 6 2.3644 1.8995 -3.7948 8 6 2.8323 3.3539 -3.7057 9 7 2.0527 4.0581 -2.6794 10 6 2.2526 3.4564 -1.3549 11 6 1.9955 -0.7659 1.1377 12 6 1.7824 -2.2603 0.8887 13 6 2.3377 -2.7887 -0.4088 14 1 1.7181 -2.8089 -1.2931 15 6 3.6370 -3.2466 -0.4668 16 7 4.3717 -3.2805 0.6235 17 14 4.3539 -3.8184 -2.0943 18 1 4.9906 -2.6689 -2.7859 19 1 5.3712 -4.8711 -1.8444 20 1 3.2698 -4.3700 -2.9462 21 6 0.4866 -2.8856 1.4092 22 6 1.8166 -3.1907 2.1028 23 1 -0.3634 0.5930 -0.8393 24 1 -0.3633 -1.0235 -0.0940 25 1 -0.3634 0.4302 0.9332 26 1 3.0631 1.3509 0.2180 27 1 1.4804 1.9583 0.7607 28 1 3.6085 1.2164 -2.1719 29 1 2.1789 0.2006 -2.4795 30 1 2.9537 1.3730 -4.5456 31 1 1.3111 1.8720 -4.0739 32 1 3.8891 3.3798 -3.4403 33 1 2.6877 3.8417 -4.6696 34 1 1.0737 4.0816 -2.9219 35 1 1.6874 4.0187 -0.6116 36 1 3.3122 3.4819 -1.1006 37 1 3.0608 -0.5644 1.2495 38 1 1.4725 -0.4709 2.0474 39 1 5.3066 -3.5333 0.5706 40 1 -0.2139 -2.2323 1.9294 41 1 0.0361 -3.6794 0.8134 42 1 2.2406 -4.1851 1.9630 43 1 1.9913 -2.7381 3.0789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234326946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:20 Heat of formation + Delta-G solvation = 2.017927 kcal Electronic energy + Delta-G solvation = -19819.166630 eV Core-core repulsion = 17091.639830 eV Total energy + Delta-G solvation = -2727.526800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21464 -38.93107 -36.70673 -33.86891 -32.74878 -32.17563 -28.56735 -27.60248 -26.98754 -24.62337 -23.57054 -22.84415 -21.97652 -20.92249 -20.74771 -17.90190 -16.83816 -16.60142 -16.57696 -16.08041 -15.82321 -15.46202 -15.25067 -14.83949 -14.59837 -14.15968 -13.94837 -13.43065 -13.14613 -13.04377 -12.92880 -12.80396 -12.61240 -12.46275 -12.42822 -12.30287 -12.08311 -11.97221 -11.85837 -11.48899 -11.22232 -11.09752 -10.83729 -10.26972 -9.87105 -9.24269 -8.86855 -8.00391 -6.06285 1.40569 1.42421 1.50182 2.48012 3.12049 3.28368 3.43499 3.63141 3.78125 4.01353 4.14866 4.23280 4.32919 4.36405 4.46980 4.52812 4.55249 4.63303 4.67104 4.69141 4.73869 4.79067 4.87964 4.89056 4.99474 4.99799 5.07101 5.10698 5.18970 5.22238 5.26677 5.32498 5.49922 5.54054 5.69592 5.74382 5.88210 6.06669 6.37011 6.50561 6.53662 6.61837 6.96556 7.58027 9.07850 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.007355 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.670792 B = 3805.996486 C = 4778.350336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.065 3.935 4 C -0.101 4.101 5 H 0.073 0.927 6 C -0.104 4.104 7 C -0.152 4.152 8 C 0.060 3.940 9 N -0.684 5.684 10 C 0.068 3.932 11 C 0.119 3.881 12 C 0.029 3.971 13 C -0.462 4.462 14 H 0.045 0.955 15 C 0.023 3.977 16 N -0.915 5.915 17 Si 0.937 3.063 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.272 1.272 21 C -0.190 4.190 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.022 0.978 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.347 0.653 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.012 0.988 39 H 0.254 0.746 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 12.897 -4.590 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C -0.064 4.064 4 C -0.122 4.122 5 H 0.091 0.909 6 C -0.141 4.141 7 C -0.191 4.191 8 C -0.069 4.069 9 N -0.312 5.312 10 C -0.063 4.063 11 C -0.009 4.009 12 C 0.028 3.972 13 C -0.500 4.500 14 H 0.063 0.937 15 C -0.175 4.175 16 N -0.555 5.555 17 Si 0.764 3.236 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.197 1.197 21 C -0.227 4.227 22 C -0.198 4.198 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.356 13.071 -4.868 14.941 hybrid contribution 0.116 -1.378 0.114 1.388 sum -5.239 11.693 -4.754 13.667 Atomic orbital electron populations 1.22340 0.87406 1.01838 0.99683 1.61639 1.07729 1.12232 1.43753 1.22087 0.99066 0.88539 0.96693 1.21756 1.00079 0.96115 0.94227 0.90912 1.21388 0.98875 0.99266 0.94616 1.22243 1.01780 0.98098 0.96956 1.22015 0.98017 0.91021 0.95891 1.60746 1.14591 1.53748 1.02133 1.21982 1.01405 0.91200 0.91668 1.21387 0.97003 0.93576 0.88961 1.18927 0.95130 0.89850 0.93315 1.20426 0.97056 1.38151 0.94393 0.93727 1.25490 0.97953 0.95910 0.98150 1.70108 1.06994 1.50551 1.27896 0.85888 0.78211 0.77789 0.81730 1.20626 1.21597 1.19677 1.23010 0.90910 1.03887 1.04874 1.22364 1.00131 1.00989 0.96274 0.90969 0.92352 0.96005 0.93020 0.94389 0.94426 0.93157 0.91934 0.91558 0.91859 0.89253 0.83509 0.89646 0.91880 0.94297 0.96992 0.93690 0.89629 0.91031 0.92367 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 9.12 127.69 1.16 2.31 16 2 N -0.53 -20.08 3.76 -922.44 -3.47 -23.55 16 3 C 0.06 2.05 4.40 86.30 0.38 2.42 16 4 C -0.10 -2.68 2.33 -10.74 -0.03 -2.71 16 5 H 0.07 1.84 6.59 -2.39 -0.02 1.83 16 6 C -0.10 -3.20 5.12 30.68 0.16 -3.04 16 7 C -0.15 -3.63 6.08 30.65 0.19 -3.45 16 8 C 0.06 1.24 6.56 86.33 0.57 1.80 16 9 N -0.68 -13.84 6.87 -514.00 -3.53 -17.37 16 10 C 0.07 1.51 5.84 86.32 0.50 2.01 16 11 C 0.12 5.21 4.89 86.30 0.42 5.63 16 12 C 0.03 1.39 1.30 -52.93 -0.07 1.32 16 13 C -0.46 -25.24 8.54 25.60 0.22 -25.02 16 14 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 15 C 0.02 1.28 5.42 84.66 0.46 1.74 16 16 N -0.92 -53.15 12.39 21.45 0.27 -52.88 16 17 Si 0.94 44.80 29.54 68.60 2.03 46.83 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 C -0.19 -8.10 8.50 30.62 0.26 -7.84 16 22 C -0.16 -7.64 9.02 30.62 0.28 -7.37 16 23 H 0.07 2.02 6.49 -2.39 -0.02 2.01 16 24 H 0.06 2.07 6.47 -2.38 -0.02 2.06 16 25 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 26 H 0.05 1.80 7.71 -2.39 -0.02 1.78 16 27 H 0.04 1.07 8.05 -2.39 -0.02 1.05 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.90 7.77 -2.39 -0.02 1.88 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.35 6.00 8.86 -89.70 -0.79 5.21 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.91 7.70 -2.39 -0.02 1.89 16 38 H 0.01 0.49 7.94 -2.39 -0.02 0.47 16 39 H 0.25 14.27 8.32 -92.71 -0.77 13.49 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.06 3.09 8.01 -2.39 -0.02 3.07 16 43 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -59.35 332.20 -0.05 -59.40 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.16 Total: 19.77 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.50 Total: -32.19 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -6.73 Total: -93.80 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -59.35 -0.05 -59.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234326946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.415 kcal (2) G-P(sol) polarization free energy of solvation -59.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds