Wall clock time and date at job start Mon Mar 30 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99985 * 2 1 4 4 C 1.52996 * 109.47501 * 164.20837 * 3 2 1 5 5 H 1.09005 * 109.53476 * 66.45475 * 4 3 2 6 6 C 1.53112 * 109.50755 * 186.55903 * 4 3 2 7 7 C 1.53124 * 109.21402 * 177.62989 * 6 4 3 8 8 C 1.53037 * 109.27572 * 302.30909 * 7 6 4 9 9 N 1.46854 * 109.52111 * 59.18427 * 8 7 6 10 10 C 1.46848 * 111.19285 * 298.25290 * 9 8 7 11 11 C 1.46894 * 111.00340 * 236.04489 * 2 1 3 12 12 C 1.53004 * 109.47167 * 284.81929 * 11 2 1 13 13 C 1.50693 * 115.55155 * 150.58074 * 12 11 2 14 14 H 1.08002 * 120.00101 * 114.59748 * 13 12 11 15 15 C 1.37878 * 120.00086 * 294.59532 * 13 12 11 16 16 N 1.31511 * 119.99733 * 343.42099 * 15 13 12 17 17 Si 1.86796 * 120.00137 * 163.41262 * 15 13 12 18 18 H 1.48499 * 109.47123 * 90.00318 * 17 15 13 19 19 H 1.48499 * 109.47381 * 210.00408 * 17 15 13 20 20 H 1.48502 * 109.47395 * 330.00294 * 17 15 13 21 21 C 1.52998 * 117.49453 * 4.86373 * 12 11 2 22 22 C 1.52992 * 60.00155 * 252.51575 * 21 12 11 23 23 H 1.09004 * 109.47070 * 58.15516 * 1 2 3 24 24 H 1.08994 * 109.47179 * 178.15524 * 1 2 3 25 25 H 1.08996 * 109.47348 * 298.15829 * 1 2 3 26 26 H 1.08998 * 109.47086 * 44.20802 * 3 2 1 27 27 H 1.09008 * 109.47144 * 284.21098 * 3 2 1 28 28 H 1.08994 * 109.52415 * 57.69096 * 6 4 3 29 29 H 1.09001 * 109.51972 * 297.56306 * 6 4 3 30 30 H 1.09001 * 109.50614 * 62.24923 * 7 6 4 31 31 H 1.08997 * 109.50014 * 182.33172 * 7 6 4 32 32 H 1.09003 * 109.46061 * 179.19618 * 8 7 6 33 33 H 1.08994 * 109.46679 * 299.17709 * 8 7 6 34 34 H 1.00899 * 111.00042 * 174.16136 * 9 8 7 35 35 H 1.09003 * 109.46006 * 181.76187 * 10 9 8 36 36 H 1.08995 * 109.46827 * 301.72535 * 10 9 8 37 37 H 1.09009 * 109.47231 * 44.81618 * 11 2 1 38 38 H 1.09001 * 109.47363 * 164.81610 * 11 2 1 39 39 H 0.97005 * 120.00089 * 185.01583 * 16 15 13 40 40 H 1.08996 * 117.50537 * 0.02562 * 21 12 11 41 41 H 1.09009 * 117.49232 * 145.02518 * 21 12 11 42 42 H 1.09000 * 117.50141 * 252.50857 * 22 21 12 43 43 H 1.08998 * 117.49776 * 107.49617 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4740 1.3503 0.3925 5 1 4.0498 0.8450 -0.3829 6 6 3.9812 2.7861 0.5523 7 6 5.4445 2.7564 1.0025 8 6 5.5545 1.9717 2.3117 9 7 5.0587 0.6046 2.1076 10 6 3.6421 0.6058 1.7206 11 6 1.9955 -0.7660 -1.1375 12 6 1.8338 -2.2625 -0.8632 13 6 1.6569 -3.1312 -2.0818 14 1 2.4127 -3.8577 -2.3414 15 6 0.5301 -2.9987 -2.8652 16 7 -0.5264 -2.3713 -2.3966 17 14 0.5042 -3.7102 -4.5922 18 1 0.0038 -5.1075 -4.5444 19 1 -0.3903 -2.8931 -5.4509 20 1 1.8787 -3.6957 -5.1542 21 6 1.0908 -2.6710 0.4103 22 6 2.6072 -2.8516 0.3182 23 1 -0.3633 0.5422 -0.8730 24 1 -0.3633 -1.0271 -0.0331 25 1 -0.3634 0.4849 0.9060 26 1 1.4379 1.9746 0.7165 27 1 1.8901 1.8011 -0.9963 28 1 3.3805 3.3036 1.3001 29 1 3.9042 3.3078 -0.4017 30 1 6.0512 2.2733 0.2366 31 1 5.7982 3.7757 1.1576 32 1 6.5971 1.9366 2.6276 33 1 4.9584 2.4629 3.0808 34 1 5.2084 0.0391 2.9297 35 1 3.2958 -0.4215 1.6071 36 1 3.0551 1.1035 2.4924 37 1 1.4451 -0.5005 -2.0402 38 1 3.0516 -0.5336 -1.2744 39 1 -1.3436 -2.3409 -2.9185 40 1 0.7167 -1.8737 1.0525 41 1 0.4734 -3.5684 0.3668 42 1 2.9876 -3.8678 0.2142 43 1 3.2311 -2.1732 0.9000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234357380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:23 Heat of formation + Delta-G solvation = 27.566183 kcal Electronic energy + Delta-G solvation = -19995.154787 eV Core-core repulsion = 17268.735842 eV Total energy + Delta-G solvation = -2726.418945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.93459 -37.30412 -34.72611 -32.12341 -31.83930 -30.87574 -26.96788 -25.93669 -25.18200 -23.51478 -22.46965 -20.83420 -20.49815 -19.43435 -18.46632 -16.34171 -16.08744 -14.83511 -14.64262 -14.55617 -14.37043 -14.09035 -13.84908 -13.57796 -12.94121 -12.75742 -12.57801 -11.94915 -11.86747 -11.54577 -11.32544 -11.14657 -10.94121 -10.86758 -10.85832 -10.68246 -10.36482 -10.17010 -10.10201 -10.01082 -9.70870 -9.02451 -8.93653 -8.30403 -8.26230 -7.81151 -7.38672 -6.00545 -3.99368 3.30046 3.38054 3.43326 4.37595 4.42860 4.66928 4.98852 5.01337 5.14903 5.29134 5.31536 5.55696 5.59886 5.62007 5.75061 5.78032 5.89007 5.97930 6.02555 6.11061 6.16505 6.23116 6.24161 6.44399 6.46657 6.56420 6.61180 6.67761 6.77940 6.94562 7.05994 7.11228 7.25697 7.25914 7.40096 7.55267 7.62081 7.74012 7.91158 8.00995 8.10010 8.62034 8.99610 9.61053 11.06139 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.005738 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.176514 B = 4878.350782 C = 4957.563543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.536 5.536 3 C 0.059 3.941 4 C -0.078 4.078 5 H 0.078 0.922 6 C -0.116 4.116 7 C -0.115 4.115 8 C 0.058 3.942 9 N -0.692 5.692 10 C 0.072 3.928 11 C 0.101 3.899 12 C 0.051 3.949 13 C -0.499 4.499 14 H 0.058 0.942 15 C 0.075 3.925 16 N -0.870 5.870 17 Si 0.881 3.119 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.170 4.170 22 C -0.204 4.204 23 H 0.013 0.987 24 H 0.106 0.894 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.339 0.661 35 H 0.098 0.902 36 H 0.020 0.980 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.258 0.742 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 9.752 7.635 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.259 5.259 3 C -0.070 4.070 4 C -0.097 4.097 5 H 0.096 0.904 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.071 4.071 9 N -0.323 5.323 10 C -0.056 4.056 11 C -0.026 4.026 12 C 0.050 3.950 13 C -0.537 4.537 14 H 0.076 0.924 15 C -0.128 4.128 16 N -0.506 5.506 17 Si 0.709 3.291 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.208 4.208 22 C -0.241 4.241 23 H 0.032 0.968 24 H 0.124 0.876 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.839 9.610 7.334 13.889 hybrid contribution -0.892 0.293 -0.877 1.285 sum 5.947 9.903 6.457 13.233 Atomic orbital electron populations 1.22521 0.87269 1.04806 0.97532 1.62098 1.08019 1.10789 1.45038 1.22075 0.94635 0.91467 0.98873 1.21173 0.95694 0.94628 0.98211 0.90405 1.21614 0.95847 0.97116 1.00851 1.21552 0.97099 0.98998 0.97689 1.21883 0.99272 0.89639 0.96338 1.60276 1.19889 1.11405 1.40750 1.21941 0.86087 1.02634 0.94965 1.21686 0.96880 0.93794 0.90260 1.18785 0.98103 0.90323 0.87793 1.20491 1.05337 1.19906 1.07928 0.92416 1.24922 0.95399 0.94885 0.97621 1.70001 1.01105 1.42597 1.36915 0.86775 0.78020 0.78844 0.85504 1.20815 1.21291 1.19809 1.22828 0.92036 1.01449 1.04440 1.22836 0.94969 0.99901 1.06390 0.96822 0.87560 0.94244 0.92214 0.95502 0.92643 0.92191 0.91228 0.92168 0.91470 0.95857 0.84344 0.88356 0.96208 0.94198 0.93175 0.93212 0.89949 0.91613 0.91714 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.31 60.06 0.50 1.03 16 2 N -0.54 -10.31 2.74 -242.92 -0.66 -10.97 16 3 C 0.06 0.96 4.49 -3.82 -0.02 0.94 16 4 C -0.08 -1.17 2.28 -90.47 -0.21 -1.37 16 5 H 0.08 1.33 6.75 -51.93 -0.35 0.98 16 6 C -0.12 -1.44 5.28 -26.61 -0.14 -1.58 16 7 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 8 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 9 N -0.69 -9.15 6.85 -113.73 -0.78 -9.93 16 10 C 0.07 1.07 5.59 -3.76 -0.02 1.05 16 11 C 0.10 2.27 4.93 -3.83 -0.02 2.25 16 12 C 0.05 1.24 1.70 -155.66 -0.26 0.98 16 13 C -0.50 -13.60 8.77 -34.44 -0.30 -13.90 16 14 H 0.06 1.60 7.87 -52.49 -0.41 1.18 16 15 C 0.08 2.03 5.09 -17.82 -0.09 1.94 16 16 N -0.87 -23.76 13.21 55.43 0.73 -23.03 16 17 Si 0.88 20.93 29.57 -169.99 -5.03 15.90 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.17 -3.96 8.10 -26.74 -0.22 -4.18 16 22 C -0.20 -4.55 9.92 -26.74 -0.27 -4.82 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.11 2.42 5.39 -51.93 -0.28 2.14 16 25 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 27 H 0.03 0.46 8.06 -51.92 -0.42 0.04 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.34 3.96 8.90 -39.29 -0.35 3.61 16 35 H 0.10 1.70 5.56 -51.93 -0.29 1.41 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.04 1.01 7.61 -51.92 -0.39 0.61 16 38 H 0.05 1.10 6.34 -51.93 -0.33 0.77 16 39 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 40 H 0.08 1.83 5.36 -51.93 -0.28 1.55 16 41 H 0.07 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.07 1.45 6.22 -51.93 -0.32 1.13 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -26.90 324.68 -9.70 -36.60 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.62 Total: 5.04 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.23 Total: -18.50 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.71 Total: -43.93 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.90 -9.70 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234357380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.163 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds