Wall clock time and date at job start Mon Mar 30 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99985 * 2 1 4 4 C 1.52996 * 109.47501 * 164.20837 * 3 2 1 5 5 H 1.09005 * 109.53476 * 66.45475 * 4 3 2 6 6 C 1.53112 * 109.50755 * 186.55903 * 4 3 2 7 7 C 1.53124 * 109.21402 * 177.62989 * 6 4 3 8 8 C 1.53037 * 109.27572 * 302.30909 * 7 6 4 9 9 N 1.46854 * 109.52111 * 59.18427 * 8 7 6 10 10 C 1.46848 * 111.19285 * 298.25290 * 9 8 7 11 11 C 1.46894 * 111.00340 * 236.04489 * 2 1 3 12 12 C 1.53004 * 109.47167 * 284.81929 * 11 2 1 13 13 C 1.50693 * 115.55155 * 150.58074 * 12 11 2 14 14 H 1.08002 * 120.00101 * 114.59748 * 13 12 11 15 15 C 1.37878 * 120.00086 * 294.59532 * 13 12 11 16 16 N 1.31511 * 119.99733 * 343.42099 * 15 13 12 17 17 Si 1.86796 * 120.00137 * 163.41262 * 15 13 12 18 18 H 1.48499 * 109.47123 * 90.00318 * 17 15 13 19 19 H 1.48499 * 109.47381 * 210.00408 * 17 15 13 20 20 H 1.48502 * 109.47395 * 330.00294 * 17 15 13 21 21 C 1.52998 * 117.49453 * 4.86373 * 12 11 2 22 22 C 1.52992 * 60.00155 * 252.51575 * 21 12 11 23 23 H 1.09004 * 109.47070 * 58.15516 * 1 2 3 24 24 H 1.08994 * 109.47179 * 178.15524 * 1 2 3 25 25 H 1.08996 * 109.47348 * 298.15829 * 1 2 3 26 26 H 1.08998 * 109.47086 * 44.20802 * 3 2 1 27 27 H 1.09008 * 109.47144 * 284.21098 * 3 2 1 28 28 H 1.08994 * 109.52415 * 57.69096 * 6 4 3 29 29 H 1.09001 * 109.51972 * 297.56306 * 6 4 3 30 30 H 1.09001 * 109.50614 * 62.24923 * 7 6 4 31 31 H 1.08997 * 109.50014 * 182.33172 * 7 6 4 32 32 H 1.09003 * 109.46061 * 179.19618 * 8 7 6 33 33 H 1.08994 * 109.46679 * 299.17709 * 8 7 6 34 34 H 1.00899 * 111.00042 * 174.16136 * 9 8 7 35 35 H 1.09003 * 109.46006 * 181.76187 * 10 9 8 36 36 H 1.08995 * 109.46827 * 301.72535 * 10 9 8 37 37 H 1.09009 * 109.47231 * 44.81618 * 11 2 1 38 38 H 1.09001 * 109.47363 * 164.81610 * 11 2 1 39 39 H 0.97005 * 120.00089 * 185.01583 * 16 15 13 40 40 H 1.08996 * 117.50537 * 0.02562 * 21 12 11 41 41 H 1.09009 * 117.49232 * 145.02518 * 21 12 11 42 42 H 1.09000 * 117.50141 * 252.50857 * 22 21 12 43 43 H 1.08998 * 117.49776 * 107.49617 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4740 1.3503 0.3925 5 1 4.0498 0.8450 -0.3829 6 6 3.9812 2.7861 0.5523 7 6 5.4445 2.7564 1.0025 8 6 5.5545 1.9717 2.3117 9 7 5.0587 0.6046 2.1076 10 6 3.6421 0.6058 1.7206 11 6 1.9955 -0.7660 -1.1375 12 6 1.8338 -2.2625 -0.8632 13 6 1.6569 -3.1312 -2.0818 14 1 2.4127 -3.8577 -2.3414 15 6 0.5301 -2.9987 -2.8652 16 7 -0.5264 -2.3713 -2.3966 17 14 0.5042 -3.7102 -4.5922 18 1 0.0038 -5.1075 -4.5444 19 1 -0.3903 -2.8931 -5.4509 20 1 1.8787 -3.6957 -5.1542 21 6 1.0908 -2.6710 0.4103 22 6 2.6072 -2.8516 0.3182 23 1 -0.3633 0.5422 -0.8730 24 1 -0.3633 -1.0271 -0.0331 25 1 -0.3634 0.4849 0.9060 26 1 1.4379 1.9746 0.7165 27 1 1.8901 1.8011 -0.9963 28 1 3.3805 3.3036 1.3001 29 1 3.9042 3.3078 -0.4017 30 1 6.0512 2.2733 0.2366 31 1 5.7982 3.7757 1.1576 32 1 6.5971 1.9366 2.6276 33 1 4.9584 2.4629 3.0808 34 1 5.2084 0.0391 2.9297 35 1 3.2958 -0.4215 1.6071 36 1 3.0551 1.1035 2.4924 37 1 1.4451 -0.5005 -2.0402 38 1 3.0516 -0.5336 -1.2744 39 1 -1.3436 -2.3409 -2.9185 40 1 0.7167 -1.8737 1.0525 41 1 0.4734 -3.5684 0.3668 42 1 2.9876 -3.8678 0.2142 43 1 3.2311 -2.1732 0.9000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234357380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:23 Heat of formation + Delta-G solvation = 12.047420 kcal Electronic energy + Delta-G solvation = -19995.827731 eV Core-core repulsion = 17268.735842 eV Total energy + Delta-G solvation = -2727.091889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23978 -38.81014 -36.34222 -33.99018 -33.15638 -31.97686 -28.77647 -27.35876 -27.07701 -24.58021 -23.80032 -22.68929 -21.84492 -20.74268 -20.14047 -18.06186 -17.42101 -16.60110 -16.27409 -16.09822 -15.68340 -15.39208 -15.28397 -14.63136 -14.57906 -14.18990 -13.77035 -13.43126 -13.24947 -13.14599 -13.01939 -12.79859 -12.71885 -12.62373 -12.38485 -12.18494 -11.85500 -11.65046 -11.42964 -11.23658 -11.13418 -10.91176 -10.86487 -10.26842 -9.73178 -9.26302 -9.02233 -8.07260 -6.12121 1.39121 1.43013 1.52307 2.43917 3.07827 3.30514 3.38486 3.69842 3.98336 4.00442 4.06641 4.26042 4.42331 4.49374 4.57071 4.62238 4.63590 4.74225 4.76207 4.80654 4.82894 4.87645 4.91601 4.98311 5.06797 5.11190 5.14781 5.23546 5.25066 5.28445 5.44111 5.49772 5.54215 5.59927 5.71970 5.84542 5.91020 6.22215 6.26742 6.47272 6.59981 6.61656 6.92783 7.50232 8.97814 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.005738 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.176514 B = 4878.350782 C = 4957.563543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.060 3.940 4 C -0.073 4.073 5 H 0.052 0.948 6 C -0.112 4.112 7 C -0.114 4.114 8 C 0.057 3.943 9 N -0.704 5.704 10 C 0.081 3.919 11 C 0.120 3.880 12 C 0.027 3.973 13 C -0.525 4.525 14 H 0.045 0.955 15 C 0.037 3.963 16 N -0.886 5.886 17 Si 0.938 3.062 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.161 4.161 22 C -0.185 4.185 23 H -0.001 1.001 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.348 0.652 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.004 0.996 38 H 0.052 0.948 39 H 0.258 0.742 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 11.198 8.589 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C -0.069 4.069 4 C -0.093 4.093 5 H 0.071 0.929 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.072 4.072 9 N -0.336 5.336 10 C -0.048 4.048 11 C -0.008 4.008 12 C 0.026 3.974 13 C -0.563 4.563 14 H 0.063 0.937 15 C -0.165 4.165 16 N -0.523 5.523 17 Si 0.764 3.236 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.199 4.199 22 C -0.222 4.222 23 H 0.018 0.982 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.684 11.057 8.300 15.817 hybrid contribution -1.135 -0.153 -1.144 1.619 sum 6.548 10.904 7.156 14.594 Atomic orbital electron populations 1.22402 0.87577 1.03075 0.98362 1.62071 1.07622 1.12510 1.43039 1.22167 0.95878 0.89677 0.99137 1.21099 0.94169 0.96435 0.97552 0.92919 1.21585 0.96779 0.95088 1.01551 1.21567 0.95994 1.00326 0.97323 1.21969 1.00264 0.88451 0.96498 1.60245 1.18730 1.12992 1.41586 1.21728 0.87269 1.00940 0.94908 1.21323 0.96454 0.93160 0.89856 1.18879 0.99737 0.91239 0.87526 1.20745 1.05317 1.20581 1.09648 0.93720 1.25512 0.95087 0.95440 1.00478 1.70091 1.01264 1.43165 1.37740 0.85878 0.77876 0.78254 0.81569 1.20435 1.20905 1.19732 1.22666 0.92392 1.00678 1.04126 1.22814 0.94495 0.99882 1.04983 0.98200 0.90438 0.91230 0.90226 0.96186 0.91502 0.91817 0.92458 0.89766 0.89864 0.95015 0.83408 0.90961 0.95683 0.97742 0.93009 0.93242 0.88698 0.94008 0.92101 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.33 8.31 127.69 1.06 2.39 16 2 N -0.53 -20.09 2.74 -922.46 -2.52 -22.62 16 3 C 0.06 1.88 4.49 86.30 0.39 2.27 16 4 C -0.07 -2.09 2.28 -10.70 -0.02 -2.11 16 5 H 0.05 1.77 6.75 -2.38 -0.02 1.76 16 6 C -0.11 -2.49 5.28 30.67 0.16 -2.33 16 7 C -0.11 -2.26 6.09 30.65 0.19 -2.07 16 8 C 0.06 1.12 6.55 86.32 0.57 1.68 16 9 N -0.70 -17.12 6.85 -513.75 -3.52 -20.63 16 10 C 0.08 2.25 5.59 86.37 0.48 2.73 16 11 C 0.12 5.47 4.93 86.31 0.43 5.90 16 12 C 0.03 1.34 1.70 -52.93 -0.09 1.25 16 13 C -0.52 -29.27 8.77 25.60 0.22 -29.04 16 14 H 0.04 2.53 7.87 -2.91 -0.02 2.51 16 15 C 0.04 2.02 5.09 84.66 0.43 2.45 16 16 N -0.89 -49.26 13.21 21.45 0.28 -48.98 16 17 Si 0.94 43.52 29.57 68.60 2.03 45.55 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 C -0.16 -7.58 8.10 30.59 0.25 -7.33 16 22 C -0.18 -8.23 9.92 30.59 0.30 -7.93 16 23 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 24 H 0.08 3.54 5.39 -2.39 -0.01 3.53 16 25 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 26 H 0.08 2.21 7.98 -2.39 -0.02 2.19 16 27 H 0.02 0.66 8.06 -2.38 -0.02 0.64 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.35 7.38 8.90 -89.69 -0.80 6.58 16 35 H 0.07 2.40 5.56 -2.39 -0.01 2.38 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.00 0.22 7.61 -2.38 -0.02 0.20 16 38 H 0.05 2.30 6.34 -2.39 -0.02 2.29 16 39 H 0.26 13.81 8.32 -92.70 -0.77 13.04 16 40 H 0.09 4.19 5.36 -2.39 -0.01 4.18 16 41 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.09 3.61 6.22 -2.39 -0.01 3.59 16 Total: -1.00 -57.87 324.68 0.81 -57.06 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.17 Total: 21.76 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 4.36 Total: -32.14 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -5.76 Total: -92.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -57.87 0.81 -57.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234357380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.107 kcal (2) G-P(sol) polarization free energy of solvation -57.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds