Wall clock time and date at job start Mon Mar 30 2020 04:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47908 * 111.00024 * 2 1 4 4 C 1.50803 * 108.49221 * 153.76064 * 3 2 1 5 5 C 1.53700 * 112.09374 * 92.55855 * 4 3 2 6 6 N 1.48062 * 112.46839 * 318.55957 * 5 4 3 7 7 C 1.46904 * 111.00194 * 192.19342 * 6 5 4 8 8 C 1.54266 * 110.03260 * 63.84965 * 7 6 5 9 9 C 1.54884 * 104.19923 * 217.10860 * 8 7 6 10 10 C 1.54897 * 102.74887 * 37.94348 * 9 8 7 11 11 C 1.53881 * 110.03134 * 306.68890 * 7 6 5 12 12 C 1.44443 * 113.80255 * 318.33882 * 6 5 4 13 13 C 1.40013 * 110.99956 * 232.02377 * 2 1 3 14 14 H 1.09000 * 108.95893 * 67.42759 * 13 2 1 15 15 C 1.50705 * 108.96014 * 308.68368 * 13 2 1 16 16 H 1.07998 * 119.99763 * 323.58359 * 15 13 2 17 17 C 1.37879 * 120.00223 * 143.59489 * 15 13 2 18 18 N 1.31519 * 119.99652 * 5.10164 * 17 15 13 19 19 Si 1.86794 * 119.99847 * 185.10189 * 17 15 13 20 20 H 1.48503 * 109.47187 * 90.00040 * 19 17 15 21 21 H 1.48508 * 109.46934 * 209.99539 * 19 17 15 22 22 H 1.48494 * 109.47518 * 329.99774 * 19 17 15 23 23 H 1.09002 * 109.47543 * 193.44285 * 1 2 3 24 24 H 1.09000 * 109.47275 * 313.44084 * 1 2 3 25 25 H 1.08997 * 109.47193 * 73.44157 * 1 2 3 26 26 H 1.08999 * 109.63290 * 273.46620 * 3 2 1 27 27 H 1.09003 * 109.63007 * 34.06380 * 3 2 1 28 28 H 1.08994 * 108.95842 * 213.23143 * 4 3 2 29 29 H 1.08998 * 108.95645 * 331.97915 * 4 3 2 30 30 H 1.08996 * 108.88213 * 79.32877 * 5 4 3 31 31 H 1.08998 * 108.87997 * 197.78826 * 5 4 3 32 32 H 1.08993 * 110.02300 * 185.29375 * 7 6 5 33 33 H 1.09005 * 110.48608 * 335.79289 * 8 7 6 34 34 H 1.09005 * 110.48665 * 98.42828 * 8 7 6 35 35 H 1.09000 * 110.75559 * 279.62860 * 9 8 7 36 36 H 1.08998 * 110.75781 * 156.25854 * 9 8 7 37 37 H 1.08999 * 110.48753 * 203.38174 * 10 9 8 38 38 H 1.08997 * 110.48494 * 80.73397 * 10 9 8 39 39 H 1.08999 * 110.02706 * 238.56939 * 11 7 6 40 40 H 1.09005 * 110.02867 * 359.97438 * 11 7 6 41 41 H 1.08999 * 109.62886 * 334.41173 * 12 6 5 42 42 H 1.09000 * 109.44780 * 214.08442 * 12 6 5 43 43 H 0.96994 * 119.99279 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3681 1.3677 0.6323 5 6 4.4848 1.2000 -0.4103 6 7 4.1431 0.2029 -1.4502 7 6 5.3227 -0.1457 -2.2534 8 6 6.3827 -0.8302 -1.3660 9 6 7.7328 -0.2998 -1.9091 10 6 7.4093 1.1772 -2.2455 11 6 5.9755 1.1307 -2.8126 12 6 3.4994 -0.9821 -0.9325 13 6 1.9707 -0.8043 -1.0304 14 1 1.7282 -0.3447 -1.9885 15 6 1.3146 -2.1591 -0.9578 16 1 1.0863 -2.5977 0.0024 17 6 1.0058 -2.8386 -2.1170 18 7 1.3735 -2.3520 -3.2822 19 14 0.0654 -4.4504 -2.0326 20 1 -1.3927 -4.1768 -2.0990 21 1 0.4595 -5.3138 -3.1747 22 1 0.3816 -5.1418 -0.7571 23 1 -0.3634 -0.9995 0.2389 24 1 -0.3634 0.7066 0.7462 25 1 -0.3633 0.2929 -0.9850 26 1 2.0724 1.7450 -1.0247 27 1 1.3363 2.0275 0.5751 28 1 3.5204 2.3054 1.1666 29 1 3.4220 0.5428 1.3428 30 1 4.6669 2.1616 -0.8900 31 1 5.3960 0.8827 0.0967 32 1 5.0355 -0.8070 -3.0707 33 1 6.2512 -0.5417 -0.3230 34 1 6.3278 -1.9136 -1.4728 35 1 8.0292 -0.8442 -2.8056 36 1 8.5075 -0.3611 -1.1448 37 1 8.1035 1.5588 -2.9942 38 1 7.4436 1.7899 -1.3447 39 1 6.0057 1.0883 -3.9013 40 1 5.4167 2.0086 -2.4883 41 1 3.7840 -1.1277 0.1096 42 1 3.8049 -1.8474 -1.5207 43 1 1.1560 -2.8299 -4.0978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250358632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:48 Heat of formation + Delta-G solvation = 12.607833 kcal Electronic energy + Delta-G solvation = -20413.919491 eV Core-core repulsion = 17686.851904 eV Total energy + Delta-G solvation = -2727.067587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.36389 -37.28746 -34.10217 -32.91822 -31.20067 -28.68368 -28.26365 -26.37712 -25.87235 -23.73432 -23.04096 -20.69604 -20.15949 -19.17041 -18.15164 -16.54354 -15.84354 -15.59478 -14.82874 -14.31378 -14.10368 -14.04395 -13.83453 -13.21010 -12.83234 -12.56905 -12.28413 -11.72330 -11.59400 -11.44522 -11.09659 -10.93886 -10.90474 -10.84223 -10.78820 -10.66556 -10.51681 -10.35840 -10.23846 -9.99390 -9.88528 -9.73249 -9.60561 -8.90801 -8.43557 -7.21967 -6.81329 -5.95179 -4.00869 3.31809 3.39070 3.42422 4.43101 4.61273 4.89485 4.96972 5.16046 5.17544 5.41513 5.53077 5.63694 5.72287 5.76225 5.82074 5.87385 5.89481 5.94227 6.08905 6.13313 6.22022 6.23969 6.34351 6.38400 6.46610 6.51739 6.56339 6.58258 6.65960 6.70842 6.77220 6.87088 6.96498 7.08084 7.33388 7.79806 7.93004 8.01933 8.14919 8.25900 8.61033 8.96223 9.21132 9.65995 11.10519 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.007827 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.123033 B = 3576.583322 C = 4484.065409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.551 5.551 3 C 0.066 3.934 4 C -0.115 4.115 5 C 0.061 3.939 6 N -0.540 5.540 7 C 0.090 3.910 8 C -0.158 4.158 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.122 4.122 12 C 0.089 3.911 13 C 0.219 3.781 14 H 0.029 0.971 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.012 0.988 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.065 0.935 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 6.884 3.221 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.276 5.276 3 C -0.062 4.062 4 C -0.153 4.153 5 C -0.066 4.066 6 N -0.263 5.263 7 C -0.019 4.019 8 C -0.197 4.197 9 C -0.159 4.159 10 C -0.161 4.161 11 C -0.160 4.160 12 C -0.039 4.039 13 C 0.110 3.890 14 H 0.047 0.953 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.522 5.522 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.303 6.844 3.127 11.205 hybrid contribution -0.133 -1.019 -0.310 1.073 sum 8.170 5.826 2.817 10.422 Atomic orbital electron populations 1.21996 0.88224 1.01235 0.97656 1.59439 1.06830 1.09447 1.51866 1.21648 0.94499 0.91020 0.98990 1.21416 0.95083 1.00958 0.97859 1.22373 0.96112 0.95964 0.92194 1.61092 1.24897 1.15539 1.24821 1.22366 0.88609 0.95214 0.95728 1.23080 0.95561 1.00566 1.00478 1.22424 0.97135 0.96049 1.00305 1.22364 0.96894 0.96634 1.00230 1.22283 0.94786 0.98889 1.00024 1.22074 0.96529 0.89295 0.95983 1.18220 0.89635 0.91888 0.89270 0.95343 1.21137 1.39096 1.02148 0.92330 0.92399 1.24989 0.95687 0.97592 0.95585 1.70004 1.45794 1.39039 0.97401 0.86667 0.80356 0.83834 0.77560 1.20723 1.21423 1.19888 0.91004 0.94827 0.96956 0.94300 0.93085 0.92647 0.91344 0.92278 0.95584 0.89737 0.91511 0.91872 0.91749 0.92366 0.92252 0.92160 0.92003 0.90839 0.96037 0.91657 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 9.03 60.06 0.54 1.75 16 2 N -0.55 -12.33 4.15 -241.15 -1.00 -13.33 16 3 C 0.07 1.27 5.34 -4.37 -0.02 1.24 16 4 C -0.11 -1.94 5.37 -27.47 -0.15 -2.09 16 5 C 0.06 1.02 4.63 -2.82 -0.01 1.01 16 6 N -0.54 -10.62 3.94 -225.10 -0.89 -11.51 16 7 C 0.09 1.57 2.81 -66.59 -0.19 1.38 16 8 C -0.16 -2.43 5.45 -25.08 -0.14 -2.57 16 9 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 10 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 11 C -0.12 -1.78 6.01 -25.61 -0.15 -1.93 16 12 C 0.09 2.04 4.12 -4.51 -0.02 2.02 16 13 C 0.22 5.50 1.65 -71.79 -0.12 5.38 16 14 H 0.03 0.84 7.27 -51.93 -0.38 0.46 16 15 C -0.51 -13.81 6.51 -34.44 -0.22 -14.04 16 16 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 17 C 0.06 1.76 5.45 -17.82 -0.10 1.67 16 18 N -0.88 -25.48 12.82 55.43 0.71 -24.77 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.07 1.60 6.80 -51.93 -0.35 1.25 16 24 H 0.03 0.60 7.72 -51.93 -0.40 0.20 16 25 H 0.01 0.27 8.11 -51.93 -0.42 -0.15 16 26 H 0.04 0.81 7.57 -51.93 -0.39 0.41 16 27 H 0.05 0.87 7.60 -51.93 -0.39 0.48 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.26 7.22 -51.93 -0.37 0.88 16 30 H 0.06 0.93 6.40 -51.93 -0.33 0.59 16 31 H 0.03 0.42 5.86 -51.93 -0.30 0.12 16 32 H 0.08 1.67 8.03 -51.93 -0.42 1.25 16 33 H 0.07 1.07 5.94 -51.93 -0.31 0.76 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.10 5.97 -51.93 -0.31 0.79 16 41 H 0.02 0.49 6.92 -51.93 -0.36 0.13 16 42 H 0.06 1.64 7.33 -51.93 -0.38 1.26 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -28.08 313.51 -10.01 -38.10 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.62 Total: 0.09 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.92 Total: -9.55 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -1.18 Total: -49.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.08 -10.01 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250358632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.707 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds