Wall clock time and date at job start Mon Mar 30 2020 04:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47908 * 111.00024 * 2 1 4 4 C 1.50803 * 108.49221 * 153.76064 * 3 2 1 5 5 C 1.53700 * 112.09374 * 92.55855 * 4 3 2 6 6 N 1.48062 * 112.46839 * 318.55957 * 5 4 3 7 7 C 1.46904 * 111.00194 * 192.19342 * 6 5 4 8 8 C 1.54266 * 110.03260 * 63.84965 * 7 6 5 9 9 C 1.54884 * 104.19923 * 217.10860 * 8 7 6 10 10 C 1.54897 * 102.74887 * 37.94348 * 9 8 7 11 11 C 1.53881 * 110.03134 * 306.68890 * 7 6 5 12 12 C 1.44443 * 113.80255 * 318.33882 * 6 5 4 13 13 C 1.40013 * 110.99956 * 232.02377 * 2 1 3 14 14 H 1.09000 * 108.95893 * 67.42759 * 13 2 1 15 15 C 1.50705 * 108.96014 * 308.68368 * 13 2 1 16 16 H 1.07998 * 119.99763 * 323.58359 * 15 13 2 17 17 C 1.37879 * 120.00223 * 143.59489 * 15 13 2 18 18 N 1.31519 * 119.99652 * 5.10164 * 17 15 13 19 19 Si 1.86794 * 119.99847 * 185.10189 * 17 15 13 20 20 H 1.48503 * 109.47187 * 90.00040 * 19 17 15 21 21 H 1.48508 * 109.46934 * 209.99539 * 19 17 15 22 22 H 1.48494 * 109.47518 * 329.99774 * 19 17 15 23 23 H 1.09002 * 109.47543 * 193.44285 * 1 2 3 24 24 H 1.09000 * 109.47275 * 313.44084 * 1 2 3 25 25 H 1.08997 * 109.47193 * 73.44157 * 1 2 3 26 26 H 1.08999 * 109.63290 * 273.46620 * 3 2 1 27 27 H 1.09003 * 109.63007 * 34.06380 * 3 2 1 28 28 H 1.08994 * 108.95842 * 213.23143 * 4 3 2 29 29 H 1.08998 * 108.95645 * 331.97915 * 4 3 2 30 30 H 1.08996 * 108.88213 * 79.32877 * 5 4 3 31 31 H 1.08998 * 108.87997 * 197.78826 * 5 4 3 32 32 H 1.08993 * 110.02300 * 185.29375 * 7 6 5 33 33 H 1.09005 * 110.48608 * 335.79289 * 8 7 6 34 34 H 1.09005 * 110.48665 * 98.42828 * 8 7 6 35 35 H 1.09000 * 110.75559 * 279.62860 * 9 8 7 36 36 H 1.08998 * 110.75781 * 156.25854 * 9 8 7 37 37 H 1.08999 * 110.48753 * 203.38174 * 10 9 8 38 38 H 1.08997 * 110.48494 * 80.73397 * 10 9 8 39 39 H 1.08999 * 110.02706 * 238.56939 * 11 7 6 40 40 H 1.09005 * 110.02867 * 359.97438 * 11 7 6 41 41 H 1.08999 * 109.62886 * 334.41173 * 12 6 5 42 42 H 1.09000 * 109.44780 * 214.08442 * 12 6 5 43 43 H 0.96994 * 119.99279 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3681 1.3677 0.6323 5 6 4.4848 1.2000 -0.4103 6 7 4.1431 0.2029 -1.4502 7 6 5.3227 -0.1457 -2.2534 8 6 6.3827 -0.8302 -1.3660 9 6 7.7328 -0.2998 -1.9091 10 6 7.4093 1.1772 -2.2455 11 6 5.9755 1.1307 -2.8126 12 6 3.4994 -0.9821 -0.9325 13 6 1.9707 -0.8043 -1.0304 14 1 1.7282 -0.3447 -1.9885 15 6 1.3146 -2.1591 -0.9578 16 1 1.0863 -2.5977 0.0024 17 6 1.0058 -2.8386 -2.1170 18 7 1.3735 -2.3520 -3.2822 19 14 0.0654 -4.4504 -2.0326 20 1 -1.3927 -4.1768 -2.0990 21 1 0.4595 -5.3138 -3.1747 22 1 0.3816 -5.1418 -0.7571 23 1 -0.3634 -0.9995 0.2389 24 1 -0.3634 0.7066 0.7462 25 1 -0.3633 0.2929 -0.9850 26 1 2.0724 1.7450 -1.0247 27 1 1.3363 2.0275 0.5751 28 1 3.5204 2.3054 1.1666 29 1 3.4220 0.5428 1.3428 30 1 4.6669 2.1616 -0.8900 31 1 5.3960 0.8827 0.0967 32 1 5.0355 -0.8070 -3.0707 33 1 6.2512 -0.5417 -0.3230 34 1 6.3278 -1.9136 -1.4728 35 1 8.0292 -0.8442 -2.8056 36 1 8.5075 -0.3611 -1.1448 37 1 8.1035 1.5588 -2.9942 38 1 7.4436 1.7899 -1.3447 39 1 6.0057 1.0883 -3.9013 40 1 5.4167 2.0086 -2.4883 41 1 3.7840 -1.1277 0.1096 42 1 3.8049 -1.8474 -1.5207 43 1 1.1560 -2.8299 -4.0978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250358632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:47 Heat of formation + Delta-G solvation = -5.041477 kcal Electronic energy + Delta-G solvation = -20414.684823 eV Core-core repulsion = 17686.851904 eV Total energy + Delta-G solvation = -2727.832919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86199 -38.83594 -35.59309 -34.83096 -32.92755 -30.18105 -29.61003 -27.92924 -27.58961 -25.49027 -24.75584 -22.02479 -21.43137 -20.91079 -19.62376 -18.57257 -17.34519 -16.98890 -16.66111 -15.82014 -15.75566 -15.51282 -15.46644 -14.64216 -14.38338 -14.00707 -13.97353 -13.36606 -13.20065 -13.10302 -12.84323 -12.71267 -12.41970 -12.24232 -12.15127 -12.05933 -11.96999 -11.81332 -11.70358 -11.58623 -11.41846 -11.32587 -11.16733 -10.88691 -10.53269 -8.78389 -8.70204 -8.07989 -6.20963 1.39136 1.39888 1.50361 2.41412 3.07010 3.26304 3.57828 3.73177 3.81490 4.02648 4.13551 4.26233 4.45432 4.50550 4.55825 4.60025 4.65249 4.69976 4.74528 4.78191 4.84970 4.87429 4.94088 4.97219 5.01263 5.09232 5.10764 5.14491 5.21981 5.25560 5.36084 5.41409 5.46834 5.48812 5.50519 5.66255 5.82995 6.19806 6.52522 6.53879 6.63510 7.05338 7.13461 7.51711 8.96734 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.007827 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.123033 B = 3576.583322 C = 4484.065409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.559 5.559 3 C 0.067 3.933 4 C -0.111 4.111 5 C 0.062 3.938 6 N -0.558 5.558 7 C 0.085 3.915 8 C -0.153 4.153 9 C -0.114 4.114 10 C -0.113 4.113 11 C -0.116 4.116 12 C 0.114 3.886 13 C 0.231 3.769 14 H -0.021 1.021 15 C -0.518 4.518 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.267 1.267 23 H 0.055 0.945 24 H 0.072 0.928 25 H -0.010 1.010 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 8.256 4.666 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.283 5.283 3 C -0.060 4.060 4 C -0.149 4.149 5 C -0.065 4.065 6 N -0.282 5.282 7 C -0.024 4.024 8 C -0.192 4.192 9 C -0.152 4.152 10 C -0.151 4.151 11 C -0.154 4.154 12 C -0.015 4.015 13 C 0.121 3.879 14 H -0.003 1.003 15 C -0.557 4.557 16 H 0.069 0.931 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.009 0.991 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.583 8.231 4.589 13.440 hybrid contribution -0.558 -1.398 -0.750 1.682 sum 9.025 6.833 3.839 11.953 Atomic orbital electron populations 1.21976 0.87821 1.01331 0.97585 1.59446 1.07369 1.11406 1.50123 1.21760 0.96463 0.89178 0.98588 1.21425 0.93510 1.02519 0.97488 1.22461 0.96667 0.95630 0.91712 1.60954 1.26572 1.14617 1.26024 1.22361 0.88607 0.96586 0.94864 1.22985 0.96884 0.99431 0.99921 1.22411 0.95606 0.96240 1.00921 1.22332 0.95156 0.96377 1.01217 1.22235 0.96329 0.96783 1.00073 1.21545 0.95418 0.89586 0.94991 1.17960 0.91051 0.91167 0.87689 1.00347 1.21388 1.39123 1.03231 0.92006 0.93109 1.25727 0.96592 1.00912 0.95193 1.70147 1.47106 1.40538 0.97963 0.85664 0.79113 0.79867 0.77663 1.20048 1.21172 1.19182 0.92651 0.90912 0.99110 0.96317 0.90290 0.88582 0.92724 0.90415 0.94223 0.93649 0.91674 0.93585 0.91400 0.90288 0.90024 0.90953 0.91972 0.90944 0.96299 0.95274 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.60 9.03 127.69 1.15 3.75 16 2 N -0.56 -25.17 4.15 -916.87 -3.80 -28.97 16 3 C 0.07 2.48 5.34 85.40 0.46 2.94 16 4 C -0.11 -3.48 5.37 30.12 0.16 -3.32 16 5 C 0.06 1.96 4.63 86.32 0.40 2.36 16 6 N -0.56 -22.35 3.94 -866.07 -3.42 -25.77 16 7 C 0.08 3.01 2.81 45.64 0.13 3.14 16 8 C -0.15 -4.68 5.45 31.67 0.17 -4.51 16 9 C -0.11 -2.60 6.91 31.89 0.22 -2.38 16 10 C -0.11 -2.40 6.83 31.67 0.22 -2.18 16 11 C -0.12 -3.24 6.01 31.32 0.19 -3.05 16 12 C 0.11 5.42 4.12 87.17 0.36 5.78 16 13 C 0.23 12.11 1.65 45.82 0.08 12.19 16 14 H -0.02 -1.31 7.27 -2.39 -0.02 -1.33 16 15 C -0.52 -29.25 6.51 25.60 0.17 -29.08 16 16 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 17 C 0.02 0.86 5.45 84.65 0.46 1.32 16 18 N -0.92 -55.40 12.82 21.45 0.27 -55.13 16 19 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H 0.05 2.50 6.80 -2.39 -0.02 2.49 16 24 H 0.07 2.49 7.72 -2.39 -0.02 2.48 16 25 H -0.01 -0.46 8.11 -2.39 -0.02 -0.48 16 26 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 27 H 0.08 2.46 7.60 -2.39 -0.02 2.44 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.89 7.22 -2.39 -0.02 1.87 16 30 H 0.08 2.21 6.40 -2.39 -0.02 2.19 16 31 H 0.04 1.17 5.86 -2.39 -0.01 1.16 16 32 H 0.05 1.93 8.03 -2.39 -0.02 1.91 16 33 H 0.06 2.01 5.94 -2.38 -0.01 1.99 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 2.03 5.97 -2.38 -0.01 2.02 16 41 H 0.02 0.89 6.92 -2.39 -0.02 0.87 16 42 H 0.03 1.56 7.33 -2.39 -0.02 1.54 16 43 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -64.16 313.51 0.20 -63.96 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.96 Total: 12.17 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.16 Total: -13.07 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -6.95 Total: -109.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.16 0.20 -63.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250358632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.919 kcal (2) G-P(sol) polarization free energy of solvation -64.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds