Wall clock time and date at job start Mon Mar 30 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46954 * 110.99974 * 2 1 4 4 C 1.53056 * 109.36222 * 183.18871 * 3 2 1 5 5 N 1.46952 * 109.36494 * 301.59846 * 4 3 2 6 6 C 1.46897 * 110.99967 * 183.19037 * 5 4 3 7 7 C 1.53002 * 109.47464 * 65.62406 * 6 5 4 8 8 C 1.52997 * 109.47158 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47386 * 59.99762 * 8 7 6 10 10 C 1.52997 * 109.47199 * 299.99905 * 9 8 7 11 11 C 1.52999 * 109.46955 * 305.62245 * 6 5 4 12 12 C 1.46954 * 110.88106 * 59.32266 * 5 4 3 13 13 H 1.09000 * 109.48848 * 60.64514 * 12 5 4 14 14 C 1.50697 * 109.50790 * 180.69898 * 12 5 4 15 15 H 1.07999 * 120.00229 * 5.21251 * 14 12 5 16 16 C 1.37885 * 120.00016 * 185.20235 * 14 12 5 17 17 N 1.31516 * 119.99757 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99972 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47348 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47406 * 120.00462 * 18 16 14 21 21 H 1.48509 * 109.47171 * 240.00590 * 18 16 14 22 22 C 1.46952 * 110.99967 * 123.79996 * 2 1 3 23 23 H 1.09005 * 109.47159 * 296.20245 * 1 2 3 24 24 H 1.09002 * 109.47063 * 56.19862 * 1 2 3 25 25 H 1.09001 * 109.47628 * 176.20138 * 1 2 3 26 26 H 1.08998 * 109.49096 * 303.15689 * 3 2 1 27 27 H 1.09000 * 109.48848 * 63.22253 * 3 2 1 28 28 H 1.08995 * 109.48710 * 61.56755 * 4 3 2 29 29 H 1.09006 * 109.48504 * 181.60981 * 4 3 2 30 30 H 1.08996 * 109.47316 * 185.62646 * 6 5 4 31 31 H 1.09004 * 109.46454 * 300.00189 * 7 6 5 32 32 H 1.08999 * 109.46961 * 60.00003 * 7 6 5 33 33 H 1.08999 * 109.46896 * 299.99548 * 8 7 6 34 34 H 1.09005 * 109.46511 * 179.97438 * 8 7 6 35 35 H 1.09006 * 109.46891 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.46612 * 60.00206 * 9 8 7 37 37 H 1.08999 * 109.47099 * 300.00224 * 10 9 8 38 38 H 1.08999 * 109.46994 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47575 * 300.00033 * 11 6 5 40 40 H 1.08999 * 109.47278 * 60.00131 * 11 6 5 41 41 H 0.97001 * 119.99460 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.49190 * 56.84620 * 22 2 1 43 43 H 1.08995 * 109.49115 * 296.77623 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3290 -0.0803 5 7 4.0501 0.5658 1.0597 6 6 5.5190 0.5658 1.0597 7 6 6.0291 1.9888 1.2959 8 6 7.5591 1.9888 1.2953 9 6 8.0686 1.4820 -0.0555 10 6 7.5586 0.0590 -0.2916 11 6 6.0290 0.0588 -0.2907 12 6 3.5234 -0.8061 1.0597 13 1 3.8253 -1.3115 0.1424 14 6 4.0686 -1.5544 2.2487 15 1 4.6711 -1.0385 2.9817 16 6 3.7981 -2.8979 2.4011 17 7 3.0647 -3.5263 1.5084 18 14 4.4733 -3.8253 3.8753 19 1 5.2611 -2.8971 4.7257 20 1 3.3479 -4.3854 4.6657 21 1 5.3475 -4.9306 3.4068 22 6 1.9956 -0.7632 1.1400 23 1 -0.3634 0.4538 0.9221 24 1 -0.3633 0.5717 -0.8540 25 1 -0.3634 -1.0254 -0.0681 26 1 1.6013 1.9129 -0.8602 27 1 1.6937 1.8773 0.9174 28 1 3.8253 0.8479 -1.0106 29 1 3.9178 2.3448 -0.0516 30 1 5.8824 -0.0868 1.8535 31 1 5.6657 2.6414 0.5020 32 1 5.6658 2.3500 2.2580 33 1 7.9227 1.3362 2.0889 34 1 7.9224 3.0028 1.4631 35 1 9.1587 1.4825 -0.0560 36 1 7.7049 2.1348 -0.8490 37 1 7.9222 -0.5936 0.5020 38 1 7.9212 -0.3018 -1.2541 39 1 5.6657 -0.9550 -0.4591 40 1 5.6657 0.7114 -1.0846 41 1 2.8748 -4.4715 1.6154 42 1 1.6013 -1.7790 1.1110 43 1 1.6938 -0.2821 2.0703 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250372396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:39 Heat of formation + Delta-G solvation = -21.765083 kcal Electronic energy + Delta-G solvation = -20429.070421 eV Core-core repulsion = 17700.512312 eV Total energy + Delta-G solvation = -2728.558109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80001 -38.58455 -35.77660 -34.77494 -31.69967 -31.38601 -30.74890 -27.74802 -27.22899 -24.72905 -23.79683 -23.20266 -22.22524 -20.78215 -19.77476 -18.34059 -17.21924 -16.63739 -16.00760 -15.85015 -15.56127 -15.35151 -15.08050 -14.96054 -14.79795 -14.34517 -14.05614 -13.68694 -13.17303 -13.04116 -12.90729 -12.82376 -12.62796 -12.54950 -12.35451 -12.21084 -12.14611 -11.81110 -11.73749 -11.54978 -11.33776 -11.03720 -10.82874 -10.69446 -10.51815 -9.16150 -8.76893 -8.12966 -6.23350 1.38108 1.40325 1.51750 2.40536 3.09558 3.30025 3.37106 3.88373 3.98963 4.16231 4.24106 4.30076 4.37684 4.45397 4.46392 4.56288 4.63596 4.65266 4.69189 4.75387 4.78736 4.86110 4.89818 4.95724 5.01859 5.05181 5.10281 5.19941 5.28928 5.29959 5.33879 5.40172 5.48085 5.56286 5.65376 5.70925 5.74811 6.10843 6.28320 6.32764 6.53796 6.82633 6.95076 7.45776 8.94228 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.010451 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.253553 B = 2678.522265 C = 4147.411924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.565 5.565 3 C 0.061 3.939 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.094 3.906 7 C -0.102 4.102 8 C -0.114 4.114 9 C -0.110 4.110 10 C -0.112 4.112 11 C -0.137 4.137 12 C 0.234 3.766 13 H -0.027 1.027 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.086 3.914 23 H 0.020 0.980 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.261 0.739 42 H 0.064 0.936 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 11.221 -3.440 12.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.290 5.290 3 C -0.067 4.067 4 C -0.074 4.074 5 N -0.264 5.264 6 C -0.015 4.015 7 C -0.139 4.139 8 C -0.152 4.152 9 C -0.147 4.147 10 C -0.150 4.150 11 C -0.176 4.176 12 C 0.126 3.874 13 H -0.010 1.010 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.042 4.042 23 H 0.038 0.962 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 4.366 11.052 -3.470 12.380 hybrid contribution -0.144 -1.311 0.768 1.526 sum 4.221 9.742 -2.702 10.955 Atomic orbital electron populations 1.22307 0.87038 1.01744 1.00561 1.62245 1.08391 1.14166 1.44192 1.22182 0.94989 0.89021 1.00509 1.22203 0.94359 0.98637 0.92169 1.62395 1.07483 1.15421 1.41134 1.21575 0.86763 0.97183 0.95945 1.21535 0.95948 0.94868 1.01598 1.21511 0.94351 1.01748 0.97548 1.21496 1.00669 0.95049 0.97481 1.21450 0.94049 0.98273 1.01244 1.22006 0.97170 0.99461 0.98980 1.18897 0.90233 0.84169 0.94077 1.00960 1.21356 1.31759 0.93952 1.08347 0.92641 1.25689 0.95502 0.98404 0.98822 1.70073 1.39167 1.10229 1.36184 0.85566 0.78222 0.78504 0.79746 1.19163 1.20621 1.20695 1.22022 0.97406 0.96620 0.88190 0.96172 0.89522 0.92602 0.88694 0.95350 0.95901 0.88919 0.92245 0.91459 0.92405 0.92838 0.89915 0.90489 0.91392 0.93243 0.91759 0.95779 0.92010 0.92991 0.91746 0.98304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 9.60 127.69 1.23 2.30 16 2 N -0.57 -23.66 4.97 -921.94 -4.58 -28.24 16 3 C 0.06 2.16 5.62 86.31 0.49 2.64 16 4 C 0.05 2.00 4.75 86.31 0.41 2.41 16 5 N -0.54 -23.49 4.47 -849.78 -3.80 -27.29 16 6 C 0.09 3.65 1.98 44.92 0.09 3.74 16 7 C -0.10 -3.03 5.12 30.59 0.16 -2.87 16 8 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 9 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 10 C -0.11 -3.31 5.92 30.58 0.18 -3.13 16 11 C -0.14 -5.06 4.45 30.58 0.14 -4.92 16 12 C 0.23 12.21 1.57 44.18 0.07 12.28 16 13 H -0.03 -1.63 6.74 -2.39 -0.02 -1.64 16 14 C -0.52 -28.83 7.61 25.60 0.19 -28.64 16 15 H 0.06 3.13 6.74 -2.91 -0.02 3.11 16 16 C 0.02 0.84 5.33 84.66 0.45 1.29 16 17 N -0.92 -53.83 11.74 21.45 0.25 -53.58 16 18 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 C 0.09 4.35 4.71 86.31 0.41 4.76 16 23 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.09 2.38 8.13 -2.39 -0.02 2.36 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.72 8.13 -2.39 -0.02 2.70 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.02 0.89 6.42 -2.39 -0.02 0.88 16 29 H 0.09 2.82 6.32 -2.38 -0.02 2.81 16 30 H 0.06 2.70 6.11 -2.39 -0.01 2.69 16 31 H 0.07 1.82 6.48 -2.39 -0.02 1.81 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.02 1.08 6.74 -2.39 -0.02 1.06 16 40 H 0.06 2.13 6.40 -2.39 -0.02 2.11 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.06 3.65 6.54 -2.39 -0.02 3.64 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -62.74 313.15 -0.98 -63.72 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.95 Total: 14.05 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.17 Total: -15.06 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -8.13 Total: -109.12 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.74 -0.98 -63.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250372396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.958 kcal (2) G-P(sol) polarization free energy of solvation -62.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds