Wall clock time and date at job start Mon Mar 30 2020 04:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 110.99832 * 2 1 4 4 C 1.53049 * 109.36512 * 176.81020 * 3 2 1 5 5 N 1.46959 * 109.36362 * 58.40185 * 4 3 2 6 6 C 1.46899 * 111.00156 * 176.81294 * 5 4 3 7 7 C 1.52999 * 109.46908 * 176.04636 * 6 5 4 8 8 C 1.53000 * 109.46841 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47452 * 59.99829 * 8 7 6 10 10 C 1.52999 * 109.47203 * 300.00324 * 9 8 7 11 11 C 1.52998 * 109.47337 * 59.99855 * 10 9 8 12 12 C 1.46964 * 110.87870 * 300.68151 * 5 4 3 13 13 C 1.46949 * 111.00104 * 236.20243 * 2 1 3 14 14 H 1.09004 * 109.48863 * 63.21981 * 13 2 1 15 15 C 1.50702 * 109.48679 * 303.17803 * 13 2 1 16 16 H 1.07997 * 120.00449 * 324.85768 * 15 13 2 17 17 C 1.37882 * 120.00183 * 144.86292 * 15 13 2 18 18 N 1.31516 * 119.99641 * 5.23868 * 17 15 13 19 19 Si 1.86799 * 120.00299 * 185.23996 * 17 15 13 20 20 H 1.48496 * 109.47216 * 89.99555 * 19 17 15 21 21 H 1.48500 * 109.46928 * 209.99955 * 19 17 15 22 22 H 1.48507 * 109.46655 * 329.99602 * 19 17 15 23 23 H 1.08999 * 109.47209 * 189.24424 * 1 2 3 24 24 H 1.09004 * 109.47165 * 309.23984 * 1 2 3 25 25 H 1.08997 * 109.47585 * 69.23731 * 1 2 3 26 26 H 1.08991 * 109.49047 * 296.78273 * 3 2 1 27 27 H 1.09005 * 109.48690 * 56.84800 * 3 2 1 28 28 H 1.09003 * 109.49237 * 178.36783 * 4 3 2 29 29 H 1.09003 * 109.49157 * 298.41667 * 4 3 2 30 30 H 1.08997 * 109.47299 * 296.04635 * 6 5 4 31 31 H 1.09002 * 109.47584 * 299.99950 * 7 6 5 32 32 H 1.08996 * 109.47084 * 60.00236 * 7 6 5 33 33 H 1.09001 * 109.47048 * 299.99500 * 8 7 6 34 34 H 1.09005 * 109.47316 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47359 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.47160 * 60.00285 * 9 8 7 37 37 H 1.08997 * 109.46834 * 299.99462 * 10 9 8 38 38 H 1.09007 * 109.47031 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.47121 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47137 * 59.99667 * 11 10 9 41 41 H 1.09001 * 109.48925 * 299.34762 * 12 5 4 42 42 H 1.09002 * 109.48804 * 179.28814 * 12 5 4 43 43 H 0.96999 * 119.99910 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5660 -1.0597 6 6 5.5191 0.5660 -1.0597 7 6 6.0290 -0.3172 -2.2003 8 6 7.5590 -0.3177 -2.1999 9 6 8.0685 -0.8642 -0.8648 10 6 7.5585 0.0190 0.2757 11 6 6.0285 0.0194 0.2754 12 6 3.5234 -0.8061 -1.0598 13 6 1.9956 -0.7631 -1.1400 14 1 1.6937 -0.2819 -2.0704 15 6 1.4500 -2.1673 -1.1002 16 1 1.2864 -2.6564 -0.1513 17 6 1.1597 -2.8278 -2.2752 18 7 1.4545 -2.2738 -3.4310 19 14 0.3477 -4.5094 -2.2254 20 1 -1.1282 -4.3471 -2.2424 21 1 0.7726 -5.2993 -3.4089 22 1 0.7536 -5.2185 -0.9853 23 1 -0.3633 -1.0143 0.1651 24 1 -0.3634 0.6501 0.7960 25 1 -0.3634 0.3643 -0.9609 26 1 1.6937 1.8774 -0.9172 27 1 1.6013 1.9128 0.8603 28 1 3.9177 2.3449 0.0513 29 1 3.8253 0.8483 1.0108 30 1 5.8824 1.5842 -1.1984 31 1 5.6657 -1.3355 -2.0617 32 1 5.6657 0.0719 -3.1514 33 1 7.9227 0.7004 -2.3383 34 1 7.9224 -0.9466 -3.0127 35 1 9.1585 -0.8649 -0.8647 36 1 7.7049 -1.8824 -0.7264 37 1 7.9222 1.0371 0.1374 38 1 7.9219 -0.3701 1.2269 39 1 5.6652 0.6489 1.0876 40 1 5.6648 -0.9988 0.4138 41 1 3.8253 -1.3115 -0.1424 42 1 3.9177 -1.3470 -1.9200 43 1 1.2500 -2.7383 -4.2576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250374515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:17 Heat of formation + Delta-G solvation = -5.085791 kcal Electronic energy + Delta-G solvation = -20219.833517 eV Core-core repulsion = 17491.998676 eV Total energy + Delta-G solvation = -2727.834841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.40221 -37.16110 -34.15614 -32.72885 -30.67311 -29.78196 -29.26291 -26.34756 -25.09307 -23.00419 -22.72354 -21.62629 -20.79100 -19.55156 -18.07749 -16.53406 -15.70466 -14.77661 -14.60252 -14.38578 -14.02622 -13.87410 -13.71638 -13.54885 -13.21123 -12.86962 -12.53154 -12.06978 -11.96894 -11.60612 -11.34915 -11.15882 -11.06445 -10.94924 -10.81129 -10.72151 -10.49496 -10.35008 -10.15740 -10.12639 -9.87358 -9.59763 -9.43259 -8.99192 -8.46955 -7.45725 -7.04973 -6.03722 -4.08773 3.29259 3.36477 3.40032 4.39217 4.58506 4.92984 4.99867 5.08618 5.18846 5.36002 5.44210 5.50239 5.67883 5.74867 5.77382 5.78988 5.85258 5.92755 5.98106 6.06080 6.18348 6.23740 6.26975 6.31817 6.37154 6.40664 6.45707 6.51884 6.61545 6.66628 6.74766 6.83940 6.88517 6.95753 7.31701 7.63542 7.80436 7.85776 7.97350 8.14300 8.31437 8.68445 9.07943 9.57657 11.03586 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.007500 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.266884 B = 3732.455803 C = 4631.627332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.062 3.938 5 N -0.538 5.538 6 C 0.090 3.910 7 C -0.116 4.116 8 C -0.116 4.116 9 C -0.120 4.120 10 C -0.112 4.112 11 C -0.153 4.153 12 C 0.075 3.925 13 C 0.208 3.792 14 H 0.036 0.964 15 C -0.506 4.506 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.013 0.987 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.077 0.923 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 5.576 4.700 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.273 5.273 3 C -0.073 4.073 4 C -0.066 4.066 5 N -0.262 5.262 6 C -0.019 4.019 7 C -0.153 4.153 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.150 4.150 11 C -0.192 4.192 12 C -0.053 4.053 13 C 0.102 3.898 14 H 0.054 0.946 15 C -0.545 4.545 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.524 5.524 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.090 0.910 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.095 0.905 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.015 5.546 4.479 11.493 hybrid contribution -0.453 -0.901 -0.054 1.010 sum 8.562 4.645 4.425 10.699 Atomic orbital electron populations 1.22000 0.88632 1.01610 0.97701 1.62357 1.07099 1.10535 1.47279 1.22045 0.94183 0.91993 0.99052 1.22037 0.94959 0.97051 0.92590 1.62583 1.05266 1.16874 1.41435 1.21632 0.88338 0.98510 0.93427 1.21656 0.94038 1.00841 0.98794 1.21510 0.96243 1.00703 0.96911 1.21542 0.99431 0.99632 0.95113 1.21450 0.95931 0.99634 0.98004 1.22244 0.95389 1.02273 0.99328 1.22484 0.97581 0.85825 0.99372 1.19441 0.89416 0.93161 0.87776 0.94586 1.21000 1.42748 0.98317 0.92475 0.92188 1.25014 0.95313 0.97962 0.95530 1.69980 1.46720 1.38418 0.97283 0.86597 0.79779 0.84073 0.77585 1.20633 1.21297 1.19795 0.90965 0.94432 0.96852 0.95428 0.92332 0.92142 0.94572 0.91328 0.91096 0.91273 0.92416 0.92202 0.92623 0.92028 0.92439 0.92659 0.92129 0.91489 0.96058 0.90453 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 9.19 60.06 0.55 1.59 16 2 N -0.55 -12.32 4.78 -236.14 -1.13 -13.44 16 3 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 4 C 0.06 1.12 5.01 -3.77 -0.02 1.10 16 5 N -0.54 -10.60 4.77 -226.48 -1.08 -11.68 16 6 C 0.09 1.47 2.38 -67.71 -0.16 1.31 16 7 C -0.12 -1.86 4.71 -26.73 -0.13 -1.99 16 8 C -0.12 -1.48 5.92 -26.74 -0.16 -1.64 16 9 C -0.12 -1.45 5.92 -26.74 -0.16 -1.61 16 10 C -0.11 -1.38 5.92 -26.73 -0.16 -1.53 16 11 C -0.15 -2.29 4.48 -26.73 -0.12 -2.41 16 12 C 0.07 1.72 4.07 -3.77 -0.02 1.70 16 13 C 0.21 5.29 2.02 -68.81 -0.14 5.15 16 14 H 0.04 1.06 7.38 -51.93 -0.38 0.67 16 15 C -0.51 -13.79 7.05 -34.44 -0.24 -14.03 16 16 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 17 C 0.06 1.78 5.45 -17.82 -0.10 1.68 16 18 N -0.89 -25.38 12.84 55.43 0.71 -24.67 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.07 1.59 7.22 -51.93 -0.37 1.22 16 24 H 0.04 0.67 8.04 -51.93 -0.42 0.25 16 25 H 0.01 0.29 8.13 -51.93 -0.42 -0.14 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.66 6.43 -51.93 -0.33 0.32 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.28 6.25 -51.93 -0.32 0.96 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.90 6.42 -51.93 -0.33 0.56 16 40 H 0.07 1.14 6.67 -51.93 -0.35 0.79 16 41 H 0.02 0.50 6.68 -51.93 -0.35 0.15 16 42 H 0.08 1.92 6.01 -51.93 -0.31 1.61 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -28.05 315.83 -10.41 -38.46 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.79 Total: 0.05 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.86 Total: -9.62 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -1.50 Total: -49.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.05 -10.41 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250374515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.375 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds