Wall clock time and date at job start Mon Mar 30 2020 04:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 110.99832 * 2 1 4 4 C 1.53049 * 109.36512 * 176.81020 * 3 2 1 5 5 N 1.46959 * 109.36362 * 58.40185 * 4 3 2 6 6 C 1.46899 * 111.00156 * 176.81294 * 5 4 3 7 7 C 1.52999 * 109.46908 * 176.04636 * 6 5 4 8 8 C 1.53000 * 109.46841 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47452 * 59.99829 * 8 7 6 10 10 C 1.52999 * 109.47203 * 300.00324 * 9 8 7 11 11 C 1.52998 * 109.47337 * 59.99855 * 10 9 8 12 12 C 1.46964 * 110.87870 * 300.68151 * 5 4 3 13 13 C 1.46949 * 111.00104 * 236.20243 * 2 1 3 14 14 H 1.09004 * 109.48863 * 63.21981 * 13 2 1 15 15 C 1.50702 * 109.48679 * 303.17803 * 13 2 1 16 16 H 1.07997 * 120.00449 * 324.85768 * 15 13 2 17 17 C 1.37882 * 120.00183 * 144.86292 * 15 13 2 18 18 N 1.31516 * 119.99641 * 5.23868 * 17 15 13 19 19 Si 1.86799 * 120.00299 * 185.23996 * 17 15 13 20 20 H 1.48496 * 109.47216 * 89.99555 * 19 17 15 21 21 H 1.48500 * 109.46928 * 209.99955 * 19 17 15 22 22 H 1.48507 * 109.46655 * 329.99602 * 19 17 15 23 23 H 1.08999 * 109.47209 * 189.24424 * 1 2 3 24 24 H 1.09004 * 109.47165 * 309.23984 * 1 2 3 25 25 H 1.08997 * 109.47585 * 69.23731 * 1 2 3 26 26 H 1.08991 * 109.49047 * 296.78273 * 3 2 1 27 27 H 1.09005 * 109.48690 * 56.84800 * 3 2 1 28 28 H 1.09003 * 109.49237 * 178.36783 * 4 3 2 29 29 H 1.09003 * 109.49157 * 298.41667 * 4 3 2 30 30 H 1.08997 * 109.47299 * 296.04635 * 6 5 4 31 31 H 1.09002 * 109.47584 * 299.99950 * 7 6 5 32 32 H 1.08996 * 109.47084 * 60.00236 * 7 6 5 33 33 H 1.09001 * 109.47048 * 299.99500 * 8 7 6 34 34 H 1.09005 * 109.47316 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47359 * 179.97438 * 9 8 7 36 36 H 1.09006 * 109.47160 * 60.00285 * 9 8 7 37 37 H 1.08997 * 109.46834 * 299.99462 * 10 9 8 38 38 H 1.09007 * 109.47031 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.47121 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47137 * 59.99667 * 11 10 9 41 41 H 1.09001 * 109.48925 * 299.34762 * 12 5 4 42 42 H 1.09002 * 109.48804 * 179.28814 * 12 5 4 43 43 H 0.96999 * 119.99910 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5660 -1.0597 6 6 5.5191 0.5660 -1.0597 7 6 6.0290 -0.3172 -2.2003 8 6 7.5590 -0.3177 -2.1999 9 6 8.0685 -0.8642 -0.8648 10 6 7.5585 0.0190 0.2757 11 6 6.0285 0.0194 0.2754 12 6 3.5234 -0.8061 -1.0598 13 6 1.9956 -0.7631 -1.1400 14 1 1.6937 -0.2819 -2.0704 15 6 1.4500 -2.1673 -1.1002 16 1 1.2864 -2.6564 -0.1513 17 6 1.1597 -2.8278 -2.2752 18 7 1.4545 -2.2738 -3.4310 19 14 0.3477 -4.5094 -2.2254 20 1 -1.1282 -4.3471 -2.2424 21 1 0.7726 -5.2993 -3.4089 22 1 0.7536 -5.2185 -0.9853 23 1 -0.3633 -1.0143 0.1651 24 1 -0.3634 0.6501 0.7960 25 1 -0.3634 0.3643 -0.9609 26 1 1.6937 1.8774 -0.9172 27 1 1.6013 1.9128 0.8603 28 1 3.9177 2.3449 0.0513 29 1 3.8253 0.8483 1.0108 30 1 5.8824 1.5842 -1.1984 31 1 5.6657 -1.3355 -2.0617 32 1 5.6657 0.0719 -3.1514 33 1 7.9227 0.7004 -2.3383 34 1 7.9224 -0.9466 -3.0127 35 1 9.1585 -0.8649 -0.8647 36 1 7.7049 -1.8824 -0.7264 37 1 7.9222 1.0371 0.1374 38 1 7.9219 -0.3701 1.2269 39 1 5.6652 0.6489 1.0876 40 1 5.6648 -0.9988 0.4138 41 1 3.8253 -1.3115 -0.1424 42 1 3.9177 -1.3470 -1.9200 43 1 1.2500 -2.7383 -4.2576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250374515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:17 Heat of formation + Delta-G solvation = -23.478484 kcal Electronic energy + Delta-G solvation = -20220.631084 eV Core-core repulsion = 17491.998676 eV Total energy + Delta-G solvation = -2728.632408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86349 -38.65857 -35.67474 -34.74165 -32.00633 -31.34050 -30.75781 -27.95049 -27.04200 -24.65403 -24.12695 -23.03282 -22.19726 -20.94257 -19.64571 -18.57005 -17.28208 -16.55136 -16.11860 -15.83683 -15.54363 -15.29958 -15.23757 -14.94839 -14.87957 -14.35728 -13.94920 -13.78824 -13.23144 -13.07035 -12.93882 -12.87531 -12.70915 -12.60094 -12.35080 -12.08654 -12.07609 -11.93118 -11.77446 -11.39596 -11.35826 -11.12211 -10.98293 -10.85964 -10.54966 -9.05559 -8.88317 -8.15536 -6.27720 1.39240 1.39809 1.50801 2.39379 3.01666 3.22238 3.48963 3.78637 3.88288 4.07748 4.21322 4.27301 4.35491 4.41127 4.47884 4.54526 4.59266 4.62694 4.69464 4.71702 4.74341 4.78273 4.86355 4.94263 4.99904 5.06200 5.15526 5.20028 5.25157 5.26084 5.27922 5.34890 5.41261 5.47455 5.56876 5.60672 5.71410 6.06100 6.29164 6.33071 6.50009 6.78162 6.94976 7.42562 8.91620 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.007500 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.266884 B = 3732.455803 C = 4631.627332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.555 5.555 3 C 0.054 3.946 4 C 0.064 3.936 5 N -0.554 5.554 6 C 0.089 3.911 7 C -0.114 4.114 8 C -0.109 4.109 9 C -0.119 4.119 10 C -0.106 4.106 11 C -0.146 4.146 12 C 0.099 3.901 13 C 0.214 3.786 14 H -0.011 1.011 15 C -0.518 4.518 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.920 5.920 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.267 1.267 23 H 0.055 0.945 24 H 0.076 0.924 25 H -0.005 1.005 26 H 0.013 0.987 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.010 0.990 42 H 0.048 0.952 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.380 6.572 6.216 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.280 5.280 3 C -0.075 4.075 4 C -0.064 4.064 5 N -0.277 5.277 6 C -0.019 4.019 7 C -0.152 4.152 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.144 4.144 11 C -0.185 4.185 12 C -0.029 4.029 13 C 0.107 3.893 14 H 0.007 0.993 15 C -0.557 4.557 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.192 1.192 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.014 0.986 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.359 6.555 6.016 13.655 hybrid contribution -0.880 -1.136 -0.513 1.526 sum 9.478 5.420 5.503 12.227 Atomic orbital electron populations 1.21996 0.87950 1.01479 0.98143 1.62319 1.07900 1.12474 1.45293 1.22213 0.95341 0.90129 0.99783 1.22121 0.94002 0.98409 0.91879 1.62506 1.07700 1.14703 1.42818 1.21748 0.86148 0.99638 0.94337 1.21612 0.96819 0.98830 0.97923 1.21476 0.93220 1.02100 0.97868 1.21551 1.00955 0.98691 0.94429 1.21436 0.93438 1.00852 0.98715 1.22149 0.97670 1.00428 0.98272 1.21948 0.95971 0.87671 0.97359 1.19209 0.90930 0.92395 0.86791 0.99300 1.21205 1.42923 0.99387 0.92183 0.93020 1.25769 0.95834 1.01625 0.95079 1.70112 1.47882 1.40028 0.97840 0.85587 0.78910 0.79653 0.77716 1.19902 1.20864 1.19184 0.92572 0.90512 0.98613 0.96859 0.88939 0.88846 0.94299 0.89282 0.94236 0.93156 0.90520 0.91633 0.89990 0.93588 0.90531 0.91326 0.91528 0.94356 0.97177 0.93407 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.22 9.19 127.69 1.17 3.39 16 2 N -0.55 -25.09 4.78 -901.00 -4.30 -29.40 16 3 C 0.05 2.01 5.61 86.31 0.48 2.50 16 4 C 0.06 2.19 5.01 86.31 0.43 2.62 16 5 N -0.55 -21.89 4.77 -870.46 -4.15 -26.04 16 6 C 0.09 2.84 2.38 44.92 0.11 2.95 16 7 C -0.11 -3.73 4.71 30.59 0.14 -3.59 16 8 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 9 C -0.12 -2.60 5.92 30.59 0.18 -2.42 16 10 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 11 C -0.15 -4.16 4.48 30.59 0.14 -4.02 16 12 C 0.10 4.74 4.07 86.31 0.35 5.09 16 13 C 0.21 11.32 2.02 44.18 0.09 11.41 16 14 H -0.01 -0.67 7.38 -2.39 -0.02 -0.69 16 15 C -0.52 -29.26 7.05 25.60 0.18 -29.08 16 16 H 0.05 2.95 7.82 -2.91 -0.02 2.92 16 17 C 0.02 0.94 5.45 84.66 0.46 1.41 16 18 N -0.92 -54.90 12.84 21.45 0.28 -54.63 16 19 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H 0.06 2.50 7.22 -2.39 -0.02 2.49 16 24 H 0.08 2.59 8.04 -2.38 -0.02 2.57 16 25 H 0.00 -0.22 8.13 -2.39 -0.02 -0.24 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 2.84 8.08 -2.38 -0.02 2.82 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.04 1.33 6.43 -2.39 -0.02 1.32 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.04 1.52 6.25 -2.39 -0.01 1.50 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.07 1.81 6.42 -2.39 -0.02 1.79 16 40 H 0.04 1.30 6.67 -2.39 -0.02 1.29 16 41 H 0.01 0.50 6.68 -2.39 -0.02 0.48 16 42 H 0.05 2.54 6.01 -2.39 -0.01 2.53 16 43 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -63.50 315.83 -1.10 -64.59 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.95 Total: 13.35 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.11 Total: -14.28 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -8.18 Total: -110.07 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -63.50 -1.10 -64.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250374515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.113 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds