Wall clock time and date at job start Mon Mar 30 2020 04:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99661 * 2 1 4 4 C 1.52998 * 109.47537 * 287.12726 * 3 2 1 5 5 C 1.50694 * 115.55019 * 147.36571 * 4 3 2 6 6 H 1.07997 * 119.99965 * 144.87046 * 5 4 3 7 7 C 1.37874 * 120.00283 * 324.86745 * 5 4 3 8 8 N 1.31518 * 119.99908 * 341.78509 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 161.77915 * 7 5 4 10 10 H 1.48498 * 109.47327 * 60.00377 * 9 7 5 11 11 H 1.48495 * 109.47304 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47214 * 300.00473 * 9 7 5 13 13 C 1.53004 * 117.49597 * 1.65934 * 4 3 2 14 14 C 1.53003 * 60.00113 * 252.50976 * 13 4 3 15 15 C 1.46899 * 111.00157 * 123.95511 * 2 1 3 16 16 H 1.08997 * 110.43497 * 300.09932 * 15 2 1 17 17 C 1.54269 * 110.48602 * 177.55719 * 15 2 1 18 18 C 1.53876 * 106.59520 * 217.71400 * 17 15 2 19 19 C 1.54263 * 106.60218 * 359.97438 * 18 17 15 20 20 C 1.54889 * 110.48562 * 62.78198 * 15 2 1 21 21 H 1.09005 * 110.75464 * 38.30610 * 20 15 2 22 22 C 1.52997 * 110.75468 * 274.93707 * 20 15 2 23 23 N 1.46904 * 109.46930 * 175.11896 * 22 20 15 24 24 H 1.09003 * 109.47468 * 44.69553 * 1 2 3 25 25 H 1.09000 * 109.46976 * 164.69579 * 1 2 3 26 26 H 1.09005 * 109.46975 * 284.69689 * 1 2 3 27 27 H 1.09007 * 109.46539 * 167.12957 * 3 2 1 28 28 H 1.08997 * 109.47142 * 47.13182 * 3 2 1 29 29 H 0.97001 * 119.99800 * 185.01518 * 8 7 5 30 30 H 1.08999 * 117.50179 * 0.02562 * 13 4 3 31 31 H 1.08999 * 117.49701 * 145.01593 * 13 4 3 32 32 H 1.08993 * 117.49469 * 252.51122 * 14 13 4 33 33 H 1.09000 * 117.49755 * 107.49221 * 14 13 4 34 34 H 1.08997 * 110.03207 * 336.99469 * 17 15 2 35 35 H 1.08994 * 110.03152 * 98.42671 * 17 15 2 36 36 H 1.08998 * 110.03294 * 119.28838 * 18 17 15 37 37 H 1.08999 * 110.02743 * 240.71256 * 18 17 15 38 38 H 1.09001 * 110.48789 * 142.28624 * 19 18 17 39 39 H 1.08996 * 110.49074 * 264.80200 * 19 18 17 40 40 H 1.09000 * 109.47219 * 295.11271 * 22 20 15 41 41 H 1.08991 * 109.47508 * 55.11857 * 22 20 15 42 42 H 1.00896 * 111.00485 * 56.04405 * 23 22 20 43 43 H 1.00905 * 110.99568 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7815 1.9999 -1.3785 5 6 1.5283 3.4854 -1.3833 6 1 1.9095 4.0956 -2.1888 7 6 0.8098 4.0657 -0.3596 8 7 0.0501 3.3218 0.4145 9 14 0.9156 5.9084 -0.0719 10 1 0.4529 6.6264 -1.2866 11 1 0.0560 6.2796 1.0806 12 1 2.3225 6.2840 0.2193 13 6 1.0651 1.1572 -2.4356 14 6 2.5690 1.4136 -2.5520 15 6 1.9955 -0.7660 1.1375 16 1 1.6536 -0.3340 2.0781 17 6 3.5369 -0.8096 1.0920 18 6 3.9509 -2.2143 1.5643 19 6 2.6468 -2.9751 1.8809 20 6 1.5702 -2.2517 1.0339 21 1 1.6006 -2.5909 -0.0016 22 6 0.1782 -2.4604 1.6337 23 7 -0.2452 -3.8502 1.4167 24 1 -0.3634 0.7305 -0.7228 25 1 -0.3633 -0.9912 -0.2712 26 1 -0.3633 0.2607 0.9941 27 1 3.0609 1.3516 0.2289 28 1 1.4728 1.9612 0.7532 29 1 -0.5111 3.7378 1.0874 30 1 0.7457 0.1552 -2.1489 31 1 0.4102 1.6772 -3.1347 32 1 2.9034 2.1023 -3.3278 33 1 3.2394 0.5802 -2.3420 34 1 3.8852 -0.6405 0.0732 35 1 3.9516 -0.0540 1.7591 36 1 4.5003 -2.7269 0.7747 37 1 4.5667 -2.1404 2.4606 38 1 2.7312 -4.0190 1.5790 39 1 2.4118 -2.9039 2.9429 40 1 0.2087 -2.2528 2.7033 41 1 -0.5296 -1.7856 1.1526 42 1 0.4287 -4.4973 1.7977 43 1 -1.1626 -4.0133 1.8038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250383225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:49 Heat of formation + Delta-G solvation = 30.601614 kcal Electronic energy + Delta-G solvation = -20131.504320 eV Core-core repulsion = 17405.217002 eV Total energy + Delta-G solvation = -2726.287318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.12744 -36.82068 -34.12854 -33.52447 -32.14075 -28.85428 -27.49842 -26.49040 -25.33327 -23.89208 -21.72523 -20.83066 -19.87225 -19.44779 -18.31246 -16.18920 -16.16117 -15.51690 -14.68899 -14.56955 -14.45033 -14.11133 -13.59405 -13.39474 -12.81850 -12.66662 -12.44154 -12.19167 -11.69516 -11.34536 -11.14459 -10.99758 -10.82911 -10.64788 -10.57068 -10.44509 -10.28185 -10.19601 -10.18063 -9.90329 -9.89122 -9.05341 -8.97450 -8.61567 -8.50653 -7.89581 -7.21018 -6.02404 -4.01631 3.28199 3.33866 3.38183 4.37726 4.58940 4.72785 4.84532 5.00160 5.04879 5.22557 5.51131 5.58809 5.71087 5.74185 5.76351 5.84069 5.93318 6.06470 6.13920 6.21013 6.22026 6.30475 6.45713 6.49899 6.58453 6.61437 6.65072 6.74104 6.78404 6.95476 7.04322 7.18191 7.21037 7.32785 7.46633 7.47555 7.60994 7.64838 7.95408 8.15059 8.24351 8.61659 8.93041 9.52600 10.95673 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.006294 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.515216 B = 4447.502468 C = 4590.074698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.528 5.528 3 C 0.077 3.923 4 C 0.056 3.944 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.071 3.929 8 N -0.872 5.872 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C -0.196 4.196 14 C -0.207 4.207 15 C 0.087 3.913 16 H 0.035 0.965 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.079 4.079 21 H 0.092 0.908 22 C 0.054 3.946 23 N -0.849 5.849 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.015 0.985 27 H 0.040 0.960 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.090 0.910 42 H 0.334 0.666 43 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -11.243 5.026 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.252 5.252 3 C -0.049 4.049 4 C 0.055 3.945 5 C -0.527 4.527 6 H 0.077 0.923 7 C -0.131 4.131 8 N -0.509 5.509 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.234 4.234 14 C -0.244 4.244 15 C -0.023 4.023 16 H 0.053 0.947 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.098 4.098 21 H 0.110 0.890 22 C -0.076 4.076 23 N -0.377 5.377 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.108 0.892 42 H 0.146 0.854 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.471 -11.256 4.034 12.209 hybrid contribution -0.264 1.348 1.941 2.377 sum 2.208 -9.908 5.974 11.778 Atomic orbital electron populations 1.22523 0.87840 1.00416 1.00764 1.62196 1.07798 1.15777 1.39382 1.21857 0.97007 0.86099 0.99954 1.18916 0.97027 0.92372 0.86211 1.20587 1.34274 0.90632 1.07240 0.92300 1.24941 0.94645 0.97822 0.95741 1.69900 1.23837 1.34860 1.22303 0.86740 0.78153 0.85896 0.77754 1.20302 1.21375 1.20174 1.23048 0.92753 1.01494 1.06126 1.22782 0.94530 1.02640 1.04458 1.22390 0.94105 0.92943 0.92833 0.94746 1.22165 0.95397 0.95827 1.02071 1.22060 0.97057 0.96219 1.00388 1.22392 0.95433 0.98872 0.99141 1.22123 0.92374 0.94890 1.00410 0.89016 1.22245 0.97808 0.90026 0.97554 1.58748 1.06754 1.04836 1.67384 0.89088 0.93387 0.96664 0.94133 0.89242 0.92967 0.89570 0.91924 0.91782 0.91461 0.90515 0.92452 0.92021 0.92514 0.91994 0.92467 0.96336 0.89216 0.85401 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 6.61 60.06 0.40 1.05 16 2 N -0.53 -10.53 3.62 -232.88 -0.84 -11.37 16 3 C 0.08 1.79 4.65 -3.82 -0.02 1.78 16 4 C 0.06 1.38 2.02 -155.66 -0.31 1.07 16 5 C -0.49 -13.32 9.01 -34.44 -0.31 -13.63 16 6 H 0.06 1.62 7.88 -52.49 -0.41 1.20 16 7 C 0.07 1.89 5.03 -17.82 -0.09 1.80 16 8 N -0.87 -23.32 10.98 55.43 0.61 -22.71 16 9 Si 0.89 20.68 29.58 -169.99 -5.03 15.65 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C -0.20 -4.59 8.02 -26.73 -0.21 -4.81 16 14 C -0.21 -4.71 9.95 -26.73 -0.27 -4.98 16 15 C 0.09 1.49 2.11 -66.05 -0.14 1.35 16 16 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 17 C -0.12 -1.82 5.01 -25.61 -0.13 -1.95 16 18 C -0.12 -1.51 6.80 -25.61 -0.17 -1.68 16 19 C -0.12 -1.46 5.70 -25.06 -0.14 -1.60 16 20 C -0.08 -1.14 2.31 -88.62 -0.20 -1.35 16 21 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 22 C 0.05 0.73 5.96 -3.82 -0.02 0.71 16 23 N -0.85 -9.86 9.62 -10.37 -0.10 -9.96 16 24 H 0.09 2.11 5.71 -51.93 -0.30 1.82 16 25 H 0.05 0.88 6.03 -51.93 -0.31 0.57 16 26 H 0.01 0.31 7.76 -51.93 -0.40 -0.09 16 27 H 0.04 0.92 6.40 -51.93 -0.33 0.58 16 28 H 0.09 2.32 5.10 -51.93 -0.26 2.06 16 29 H 0.26 6.73 8.32 -40.82 -0.34 6.40 16 30 H 0.09 1.95 5.59 -51.93 -0.29 1.66 16 31 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.31 7.72 -51.93 -0.40 0.91 16 35 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.06 0.66 7.94 -51.93 -0.41 0.25 16 40 H 0.02 0.25 7.99 -51.93 -0.42 -0.17 16 41 H 0.09 1.38 4.52 -51.93 -0.23 1.14 16 42 H 0.33 3.38 8.37 -39.29 -0.33 3.05 16 43 H 0.34 3.32 9.08 -39.29 -0.36 2.96 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -26.59 319.78 -9.56 -36.15 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.39 Total: 9.67 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.63 Total: -22.25 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.33 Total: -44.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.59 -9.56 -36.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250383225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.755 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds