Wall clock time and date at job start Mon Mar 30 2020 04:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99661 * 2 1 4 4 C 1.52998 * 109.47537 * 287.12726 * 3 2 1 5 5 C 1.50694 * 115.55019 * 147.36571 * 4 3 2 6 6 H 1.07997 * 119.99965 * 144.87046 * 5 4 3 7 7 C 1.37874 * 120.00283 * 324.86745 * 5 4 3 8 8 N 1.31518 * 119.99908 * 341.78509 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 161.77915 * 7 5 4 10 10 H 1.48498 * 109.47327 * 60.00377 * 9 7 5 11 11 H 1.48495 * 109.47304 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47214 * 300.00473 * 9 7 5 13 13 C 1.53004 * 117.49597 * 1.65934 * 4 3 2 14 14 C 1.53003 * 60.00113 * 252.50976 * 13 4 3 15 15 C 1.46899 * 111.00157 * 123.95511 * 2 1 3 16 16 H 1.08997 * 110.43497 * 300.09932 * 15 2 1 17 17 C 1.54269 * 110.48602 * 177.55719 * 15 2 1 18 18 C 1.53876 * 106.59520 * 217.71400 * 17 15 2 19 19 C 1.54263 * 106.60218 * 359.97438 * 18 17 15 20 20 C 1.54889 * 110.48562 * 62.78198 * 15 2 1 21 21 H 1.09005 * 110.75464 * 38.30610 * 20 15 2 22 22 C 1.52997 * 110.75468 * 274.93707 * 20 15 2 23 23 N 1.46904 * 109.46930 * 175.11896 * 22 20 15 24 24 H 1.09003 * 109.47468 * 44.69553 * 1 2 3 25 25 H 1.09000 * 109.46976 * 164.69579 * 1 2 3 26 26 H 1.09005 * 109.46975 * 284.69689 * 1 2 3 27 27 H 1.09007 * 109.46539 * 167.12957 * 3 2 1 28 28 H 1.08997 * 109.47142 * 47.13182 * 3 2 1 29 29 H 0.97001 * 119.99800 * 185.01518 * 8 7 5 30 30 H 1.08999 * 117.50179 * 0.02562 * 13 4 3 31 31 H 1.08999 * 117.49701 * 145.01593 * 13 4 3 32 32 H 1.08993 * 117.49469 * 252.51122 * 14 13 4 33 33 H 1.09000 * 117.49755 * 107.49221 * 14 13 4 34 34 H 1.08997 * 110.03207 * 336.99469 * 17 15 2 35 35 H 1.08994 * 110.03152 * 98.42671 * 17 15 2 36 36 H 1.08998 * 110.03294 * 119.28838 * 18 17 15 37 37 H 1.08999 * 110.02743 * 240.71256 * 18 17 15 38 38 H 1.09001 * 110.48789 * 142.28624 * 19 18 17 39 39 H 1.08996 * 110.49074 * 264.80200 * 19 18 17 40 40 H 1.09000 * 109.47219 * 295.11271 * 22 20 15 41 41 H 1.08991 * 109.47508 * 55.11857 * 22 20 15 42 42 H 1.00896 * 111.00485 * 56.04405 * 23 22 20 43 43 H 1.00905 * 110.99568 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7815 1.9999 -1.3785 5 6 1.5283 3.4854 -1.3833 6 1 1.9095 4.0956 -2.1888 7 6 0.8098 4.0657 -0.3596 8 7 0.0501 3.3218 0.4145 9 14 0.9156 5.9084 -0.0719 10 1 0.4529 6.6264 -1.2866 11 1 0.0560 6.2796 1.0806 12 1 2.3225 6.2840 0.2193 13 6 1.0651 1.1572 -2.4356 14 6 2.5690 1.4136 -2.5520 15 6 1.9955 -0.7660 1.1375 16 1 1.6536 -0.3340 2.0781 17 6 3.5369 -0.8096 1.0920 18 6 3.9509 -2.2143 1.5643 19 6 2.6468 -2.9751 1.8809 20 6 1.5702 -2.2517 1.0339 21 1 1.6006 -2.5909 -0.0016 22 6 0.1782 -2.4604 1.6337 23 7 -0.2452 -3.8502 1.4167 24 1 -0.3634 0.7305 -0.7228 25 1 -0.3633 -0.9912 -0.2712 26 1 -0.3633 0.2607 0.9941 27 1 3.0609 1.3516 0.2289 28 1 1.4728 1.9612 0.7532 29 1 -0.5111 3.7378 1.0874 30 1 0.7457 0.1552 -2.1489 31 1 0.4102 1.6772 -3.1347 32 1 2.9034 2.1023 -3.3278 33 1 3.2394 0.5802 -2.3420 34 1 3.8852 -0.6405 0.0732 35 1 3.9516 -0.0540 1.7591 36 1 4.5003 -2.7269 0.7747 37 1 4.5667 -2.1404 2.4606 38 1 2.7312 -4.0190 1.5790 39 1 2.4118 -2.9039 2.9429 40 1 0.2087 -2.2528 2.7033 41 1 -0.5296 -1.7856 1.1526 42 1 0.4287 -4.4973 1.7977 43 1 -1.1626 -4.0133 1.8038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250383225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:49 Heat of formation + Delta-G solvation = 14.586510 kcal Electronic energy + Delta-G solvation = -20132.198787 eV Core-core repulsion = 17405.217002 eV Total energy + Delta-G solvation = -2726.981786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52015 -38.48688 -35.40902 -34.88515 -34.17345 -30.05390 -28.79108 -28.24432 -27.24514 -25.23479 -23.15286 -22.67971 -21.21401 -20.76752 -20.05284 -18.07232 -17.40633 -16.82639 -16.63682 -15.86793 -15.69979 -15.50689 -15.15912 -14.93072 -14.30622 -13.98348 -13.93229 -13.59517 -13.34154 -13.12804 -12.85812 -12.78393 -12.46742 -12.21097 -12.04225 -11.86471 -11.76779 -11.70964 -11.54358 -11.34451 -11.26739 -10.97619 -10.85047 -10.42187 -9.82200 -9.56149 -8.93013 -8.03910 -6.11115 1.40605 1.43948 1.50742 2.42020 2.98017 3.29813 3.57695 3.69475 3.78849 3.95191 4.04242 4.38286 4.43113 4.48685 4.53278 4.60638 4.64161 4.72636 4.76223 4.80926 4.85790 4.87234 4.96840 5.07119 5.08267 5.12483 5.18439 5.23664 5.32433 5.34970 5.45827 5.50139 5.55938 5.59602 5.60985 5.76233 6.02053 6.26624 6.31747 6.54985 6.67244 6.68036 6.89542 7.44763 8.90658 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.006294 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.515216 B = 4447.502468 C = 4590.074698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.525 5.525 3 C 0.091 3.909 4 C 0.030 3.970 5 C -0.519 4.519 6 H 0.046 0.954 7 C 0.034 3.966 8 N -0.884 5.884 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.274 1.274 13 C -0.188 4.188 14 C -0.191 4.191 15 C 0.081 3.919 16 H 0.020 0.980 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.071 4.071 21 H 0.076 0.924 22 C 0.060 3.940 23 N -0.850 5.850 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.003 0.997 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.346 0.654 43 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -12.772 5.792 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.248 5.248 3 C -0.036 4.036 4 C 0.029 3.971 5 C -0.557 4.557 6 H 0.065 0.935 7 C -0.168 4.168 8 N -0.521 5.521 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.199 1.199 13 C -0.226 4.226 14 C -0.228 4.228 15 C -0.028 4.028 16 H 0.038 0.962 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.090 4.090 21 H 0.095 0.905 22 C -0.071 4.071 23 N -0.381 5.381 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.159 0.841 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.145 -12.806 4.801 14.033 hybrid contribution -0.496 1.808 1.691 2.525 sum 2.649 -10.998 6.492 13.043 Atomic orbital electron populations 1.22322 0.88061 1.00394 0.99075 1.62197 1.07478 1.14095 1.41046 1.21546 0.96592 0.87336 0.98154 1.19047 0.98644 0.91818 0.87591 1.20804 1.35141 0.92077 1.07656 0.93527 1.25541 0.94227 1.01543 0.95449 1.70020 1.23796 1.36081 1.22234 0.85824 0.78095 0.81372 0.77577 1.20176 1.20843 1.19912 1.22930 0.93074 1.01369 1.05245 1.22769 0.94243 1.02577 1.03204 1.22538 0.95269 0.94105 0.90900 0.96193 1.22147 0.94073 0.98041 1.01165 1.22036 0.97637 0.94008 1.01396 1.22360 0.93811 0.99543 0.99200 1.22012 0.93846 0.92931 1.00213 0.90546 1.22046 0.96726 0.90940 0.97395 1.58669 1.07796 1.03817 1.67795 0.92257 0.91406 0.97797 0.94154 0.92151 0.93039 0.88804 0.93210 0.91699 0.90022 0.92110 0.92979 0.91054 0.90804 0.89883 0.91472 0.95942 0.91333 0.84067 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.03 6.61 127.69 0.84 2.87 16 2 N -0.52 -21.05 3.62 -890.71 -3.23 -24.28 16 3 C 0.09 4.30 4.65 86.30 0.40 4.70 16 4 C 0.03 1.50 2.02 -52.93 -0.11 1.40 16 5 C -0.52 -28.83 9.01 25.60 0.23 -28.60 16 6 H 0.05 2.62 7.88 -2.91 -0.02 2.60 16 7 C 0.03 1.82 5.03 84.65 0.43 2.24 16 8 N -0.88 -48.26 10.98 21.45 0.24 -48.02 16 9 Si 0.95 42.89 29.58 68.60 2.03 44.92 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C -0.19 -8.90 8.02 30.60 0.25 -8.65 16 14 C -0.19 -8.64 9.95 30.60 0.30 -8.34 16 15 C 0.08 2.73 2.11 45.99 0.10 2.82 16 16 H 0.02 0.74 8.04 -2.39 -0.02 0.72 16 17 C -0.12 -3.50 5.01 31.32 0.16 -3.35 16 18 C -0.11 -2.53 6.80 31.32 0.21 -2.31 16 19 C -0.11 -2.34 5.70 31.68 0.18 -2.16 16 20 C -0.07 -1.93 2.31 -9.50 -0.02 -1.95 16 21 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 22 C 0.06 1.53 5.96 86.30 0.51 2.04 16 23 N -0.85 -17.67 9.62 -186.72 -1.80 -19.46 16 24 H 0.06 2.82 5.71 -2.39 -0.01 2.80 16 25 H 0.07 2.48 6.03 -2.39 -0.01 2.47 16 26 H 0.00 0.15 7.76 -2.38 -0.02 0.13 16 27 H 0.04 1.86 6.40 -2.38 -0.02 1.84 16 28 H 0.06 3.23 5.10 -2.39 -0.01 3.22 16 29 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 30 H 0.09 4.24 5.59 -2.39 -0.01 4.23 16 31 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.06 2.02 7.72 -2.39 -0.02 2.00 16 35 H 0.05 1.59 8.09 -2.39 -0.02 1.57 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.45 8.07 -2.39 -0.02 1.44 16 39 H 0.07 1.31 7.94 -2.39 -0.02 1.29 16 40 H 0.02 0.56 7.99 -2.39 -0.02 0.54 16 41 H 0.07 2.05 4.52 -2.39 -0.01 2.04 16 42 H 0.35 5.88 8.37 -89.70 -0.75 5.13 16 43 H 0.35 6.05 9.08 -89.69 -0.81 5.24 16 Total: -1.00 -57.22 319.78 0.16 -57.06 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.57 Total: 29.05 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 3.48 Total: -39.27 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.79 Total: -91.77 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -57.22 0.16 -57.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250383225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.650 kcal (2) G-P(sol) polarization free energy of solvation -57.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds