Wall clock time and date at job start Mon Mar 30 2020 04:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99668 * 2 1 4 4 C 1.53001 * 109.47423 * 77.06556 * 3 2 1 5 5 C 1.50696 * 115.55393 * 293.32229 * 4 3 2 6 6 H 1.07995 * 120.00321 * 99.75555 * 5 4 3 7 7 C 1.37883 * 119.99666 * 279.76769 * 5 4 3 8 8 N 1.31508 * 120.00155 * 355.53464 * 7 5 4 9 9 Si 1.86803 * 119.99877 * 175.54249 * 7 5 4 10 10 H 1.48499 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46909 * 239.99533 * 9 7 5 12 12 H 1.48495 * 109.46998 * 119.99488 * 9 7 5 13 13 C 1.53003 * 117.51658 * 79.01705 * 4 3 2 14 14 C 1.53002 * 60.00050 * 107.48248 * 13 4 3 15 15 C 1.46899 * 111.00111 * 236.04552 * 2 1 3 16 16 H 1.08998 * 110.01300 * 322.47642 * 15 2 1 17 17 C 1.54270 * 110.03058 * 83.86105 * 15 2 1 18 18 C 1.54891 * 104.19159 * 142.89520 * 17 15 2 19 19 C 1.54890 * 102.74974 * 322.05749 * 18 17 15 20 20 C 1.53868 * 110.03250 * 201.08180 * 15 2 1 21 21 H 1.08999 * 110.03184 * 121.43427 * 20 15 2 22 22 C 1.52993 * 110.03386 * 0.02562 * 20 15 2 23 23 N 1.46901 * 109.47323 * 172.80494 * 22 20 15 24 24 H 1.08995 * 109.47564 * 60.50968 * 1 2 3 25 25 H 1.09003 * 109.47313 * 180.51276 * 1 2 3 26 26 H 1.09004 * 109.47449 * 300.50835 * 1 2 3 27 27 H 1.09005 * 109.47646 * 317.06718 * 3 2 1 28 28 H 1.09005 * 109.47299 * 197.06940 * 3 2 1 29 29 H 0.97010 * 119.99937 * 5.31175 * 8 7 5 30 30 H 1.08998 * 117.50284 * 214.97293 * 13 4 3 31 31 H 1.09003 * 117.49797 * 359.97438 * 13 4 3 32 32 H 1.08997 * 117.50056 * 252.51580 * 14 13 4 33 33 H 1.09001 * 117.51461 * 107.48175 * 14 13 4 34 34 H 1.09002 * 110.49038 * 261.57312 * 17 15 2 35 35 H 1.09000 * 110.48699 * 24.22168 * 17 15 2 36 36 H 1.09000 * 110.75365 * 80.37511 * 18 17 15 37 37 H 1.09003 * 110.75233 * 203.56313 * 18 17 15 38 38 H 1.09006 * 110.48456 * 156.61982 * 19 18 17 39 39 H 1.08998 * 110.48654 * 279.13234 * 19 18 17 40 40 H 1.09004 * 109.47561 * 292.80786 * 22 20 15 41 41 H 1.09002 * 109.47195 * 52.80362 * 22 20 15 42 42 H 1.00901 * 111.00323 * 179.97438 * 23 22 20 43 43 H 1.00893 * 111.00286 * 303.95463 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8767 1.9633 1.4059 5 6 0.4709 2.1914 1.8986 6 1 0.0114 1.4799 2.5685 7 6 -0.2286 3.3086 1.4939 8 7 0.3598 4.2190 0.7494 9 14 -2.0122 3.5290 2.0034 10 1 -2.4366 2.3726 2.8329 11 1 -2.8669 3.6086 0.7916 12 1 -2.1512 4.7806 2.7903 13 6 2.9286 1.5510 2.4376 14 6 2.9499 2.9615 1.8451 15 6 1.9955 -0.7660 -1.1376 16 1 1.3709 -1.6405 -1.3195 17 6 2.0401 0.1228 -2.3977 18 6 3.3362 -0.3140 -3.1247 19 6 4.3186 -0.5615 -1.9530 20 6 3.4436 -1.2021 -0.8543 21 1 3.5220 -2.2883 -0.8997 22 6 3.8816 -0.7020 0.5236 23 7 5.1966 -1.2671 0.8544 24 1 -0.3634 0.5059 -0.8945 25 1 -0.3634 -1.0276 0.0092 26 1 -0.3634 0.5217 0.8854 27 1 1.4231 1.9803 -0.7000 28 1 3.0428 1.3587 -0.3017 29 1 1.2602 4.0689 0.4207 30 1 2.6039 1.4447 3.4726 31 1 3.7052 0.8575 2.1149 32 1 3.7407 3.1961 1.1326 33 1 2.6391 3.7833 2.4901 34 1 1.1692 -0.0625 -3.0264 35 1 2.0947 1.1755 -2.1203 36 1 3.1713 -1.2307 -3.6908 37 1 3.7001 0.4805 -3.7763 38 1 5.1103 -1.2462 -2.2572 39 1 4.7427 0.3805 -1.6054 40 1 3.9463 0.3860 0.5117 41 1 3.1532 -1.0145 1.2720 42 1 5.5084 -0.9512 1.7606 43 1 5.1790 -2.2749 0.8089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250383231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:52 Heat of formation + Delta-G solvation = 33.136341 kcal Electronic energy + Delta-G solvation = -20688.342126 eV Core-core repulsion = 17962.164721 eV Total energy + Delta-G solvation = -2726.177405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66876 -36.67659 -34.47480 -33.37311 -31.86868 -28.59929 -27.54304 -26.83222 -25.01462 -23.37398 -22.45441 -21.00609 -20.51611 -18.96170 -18.66700 -16.57125 -15.82791 -15.66826 -14.60977 -14.48748 -14.03252 -13.92113 -13.77571 -13.40533 -13.05369 -12.85384 -12.39348 -12.07683 -11.72275 -11.63403 -11.08647 -10.90346 -10.81762 -10.76037 -10.61682 -10.53436 -10.36158 -10.28241 -10.17965 -10.11713 -9.81521 -9.30183 -8.56642 -8.37478 -8.30729 -8.09662 -7.38833 -6.31062 -4.01219 3.42100 3.43917 3.57320 4.49098 4.54732 4.76589 4.91669 5.04590 5.21378 5.34759 5.43146 5.53220 5.69519 5.76923 5.83303 5.88079 5.92236 5.98975 6.09986 6.17252 6.23915 6.24991 6.31117 6.36640 6.42167 6.49112 6.56626 6.58809 6.60189 6.68403 6.78132 6.85806 6.99827 7.16638 7.33247 7.37291 7.45761 7.69365 7.93145 8.03961 8.34724 8.45361 8.91628 9.68358 11.07155 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.007935 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.177276 B = 3527.633694 C = 3987.506500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.093 3.907 4 C 0.035 3.965 5 C -0.558 4.558 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 1.063 2.937 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.288 1.288 13 C -0.195 4.195 14 C -0.189 4.189 15 C 0.079 3.921 16 H 0.071 0.929 17 C -0.163 4.163 18 C -0.124 4.124 19 C -0.106 4.106 20 C -0.078 4.078 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.858 5.858 24 H 0.011 0.989 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.276 0.724 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.336 0.664 43 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -9.794 -3.967 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.237 5.237 3 C -0.034 4.034 4 C 0.034 3.966 5 C -0.596 4.596 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.543 5.543 9 Si 0.893 3.107 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.232 4.232 14 C -0.227 4.227 15 C -0.032 4.032 16 H 0.089 0.911 17 C -0.202 4.202 18 C -0.162 4.162 19 C -0.144 4.144 20 C -0.097 4.097 21 H 0.080 0.920 22 C -0.067 4.067 23 N -0.386 5.386 24 H 0.029 0.971 25 H 0.059 0.941 26 H 0.130 0.870 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.147 0.853 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.146 -8.562 -4.237 10.414 hybrid contribution 0.479 -1.106 0.033 1.206 sum 4.624 -9.668 -4.205 11.512 Atomic orbital electron populations 1.22757 0.87332 0.99569 1.03425 1.62112 1.08131 1.14534 1.38895 1.21903 0.96637 0.87246 0.97657 1.19017 0.91169 0.96161 0.90251 1.21244 0.97010 1.10135 1.31217 0.92815 1.25674 1.04746 0.92313 0.95368 1.70652 1.16594 1.33855 1.33245 0.83623 0.75192 0.75757 0.76174 1.21426 1.21487 1.21438 1.22996 1.03868 0.97294 0.99061 1.22808 1.02797 0.92979 1.04119 1.22449 0.95317 0.96270 0.89123 0.91089 1.23179 0.97464 1.01906 0.97666 1.22448 0.95938 1.00385 0.97434 1.22323 0.96914 1.00656 0.94494 1.21741 0.93783 0.98884 0.95309 0.91957 1.22309 0.87890 1.00849 0.95604 1.58881 1.30321 1.13205 1.36230 0.97074 0.94143 0.87045 0.94789 0.92991 0.91283 0.90985 0.90488 0.92039 0.90114 0.92422 0.90150 0.92155 0.92160 0.92192 0.91663 0.89140 0.93184 0.85260 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.08 60.07 0.55 0.88 16 2 N -0.51 -9.76 3.17 -233.54 -0.74 -10.50 16 3 C 0.09 1.96 2.48 -3.83 -0.01 1.95 16 4 C 0.03 0.82 1.13 -155.66 -0.18 0.64 16 5 C -0.56 -14.56 6.01 -34.44 -0.21 -14.77 16 6 H 0.05 1.45 7.40 -52.49 -0.39 1.06 16 7 C 0.02 0.66 5.44 -17.82 -0.10 0.56 16 8 N -0.91 -26.07 13.55 55.43 0.75 -25.32 16 9 Si 1.06 24.44 29.91 -169.99 -5.08 19.36 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.20 -4.17 9.50 -26.73 -0.25 -4.42 16 14 C -0.19 -4.32 8.61 -26.73 -0.23 -4.55 16 15 C 0.08 1.26 2.90 -66.60 -0.19 1.07 16 16 H 0.07 1.10 7.82 -51.93 -0.41 0.69 16 17 C -0.16 -2.56 5.91 -25.07 -0.15 -2.70 16 18 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 19 C -0.11 -1.48 6.03 -25.01 -0.15 -1.63 16 20 C -0.08 -1.14 2.86 -89.45 -0.26 -1.40 16 21 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 22 C 0.06 0.98 3.23 -3.83 -0.01 0.97 16 23 N -0.86 -11.36 9.50 -10.37 -0.10 -11.46 16 24 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 25 H 0.04 0.70 7.99 -51.93 -0.42 0.28 16 26 H 0.11 2.51 4.82 -51.93 -0.25 2.26 16 27 H 0.03 0.81 6.74 -51.93 -0.35 0.46 16 28 H 0.05 1.06 4.67 -51.93 -0.24 0.81 16 29 H 0.28 7.88 6.32 -40.82 -0.26 7.63 16 30 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.08 1.48 4.62 -51.93 -0.24 1.24 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.44 5.13 -51.93 -0.27 1.18 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.00 7.57 -51.93 -0.39 0.61 16 40 H 0.09 1.63 3.20 -51.93 -0.17 1.46 16 41 H 0.05 0.88 7.22 -51.93 -0.37 0.51 16 42 H 0.34 4.18 9.08 -39.29 -0.36 3.82 16 43 H 0.33 3.81 8.99 -39.30 -0.35 3.46 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -27.08 312.25 -8.88 -35.96 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.05 Total: 12.49 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.36 Total: -25.23 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.09 Total: -47.28 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.08 -8.88 -35.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250383231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.095 kcal (2) G-P(sol) polarization free energy of solvation -27.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds