Wall clock time and date at job start Mon Mar 30 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44182 * 111.00008 * 2 1 4 4 C 1.54314 * 112.61170 * 217.52553 * 3 2 1 5 5 C 1.54330 * 111.72053 * 318.92113 * 4 3 2 6 6 N 1.44245 * 112.54107 * 318.91458 * 5 4 3 7 7 C 1.46901 * 110.95599 * 217.58219 * 6 5 4 8 8 C 1.54261 * 110.03430 * 163.71898 * 7 6 5 9 9 C 1.54971 * 104.16029 * 217.13403 * 8 7 6 10 10 C 1.54889 * 102.77531 * 37.88562 * 9 8 7 11 11 C 1.53879 * 110.03470 * 46.49535 * 7 6 5 12 12 C 1.48081 * 109.87929 * 94.44892 * 6 5 4 13 13 H 1.09005 * 108.94514 * 40.18631 * 12 6 5 14 14 C 1.50698 * 108.94729 * 158.89808 * 12 6 5 15 15 H 1.08004 * 119.99929 * 66.85138 * 14 12 6 16 16 C 1.37876 * 120.00530 * 246.84281 * 14 12 6 17 17 N 1.31516 * 119.99726 * 6.31737 * 16 14 12 18 18 Si 1.86801 * 120.00243 * 186.31178 * 16 14 12 19 19 H 1.48505 * 109.46776 * 270.00304 * 18 16 14 20 20 H 1.48489 * 109.47067 * 30.00146 * 18 16 14 21 21 H 1.48502 * 109.47124 * 150.00400 * 18 16 14 22 22 C 1.46090 * 112.08001 * 279.54277 * 12 6 5 23 23 H 1.08998 * 109.47562 * 297.46407 * 1 2 3 24 24 H 1.09008 * 109.47120 * 57.46536 * 1 2 3 25 25 H 1.09001 * 109.47151 * 177.46239 * 1 2 3 26 26 H 1.09003 * 108.85304 * 338.33138 * 3 2 1 27 27 H 1.09003 * 108.85427 * 96.81915 * 3 2 1 28 28 H 1.08995 * 109.03283 * 79.49520 * 4 3 2 29 29 H 1.08994 * 109.03102 * 198.42422 * 4 3 2 30 30 H 1.09000 * 108.85204 * 79.73373 * 5 4 3 31 31 H 1.08999 * 108.85034 * 198.21291 * 5 4 3 32 32 H 1.09003 * 110.01172 * 285.10613 * 7 6 5 33 33 H 1.09007 * 110.48360 * 335.77505 * 8 7 6 34 34 H 1.09003 * 110.49068 * 98.42434 * 8 7 6 35 35 H 1.08991 * 110.72050 * 279.57244 * 9 8 7 36 36 H 1.09004 * 110.92112 * 156.28917 * 9 8 7 37 37 H 1.09005 * 110.48707 * 203.40704 * 10 9 8 38 38 H 1.08997 * 110.60032 * 80.82035 * 10 9 8 39 39 H 1.09003 * 110.03189 * 238.56985 * 11 7 6 40 40 H 1.08997 * 110.02741 * 0.02562 * 11 7 6 41 41 H 0.97002 * 120.00016 * 355.14055 * 17 16 14 42 42 H 1.08995 * 108.94589 * 181.41828 * 22 12 6 43 43 H 1.09000 * 108.94153 * 300.13636 * 22 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.2530 1.4951 -0.8677 5 6 4.2079 0.2951 -0.6948 6 7 4.3117 -0.1357 0.6779 7 6 5.6854 -0.5470 0.9971 8 6 5.8762 -0.6103 2.5265 9 6 7.3209 -0.0956 2.7500 10 6 7.4478 1.0355 1.6995 11 6 6.6844 0.4987 0.4712 12 6 3.3551 -1.2366 0.9339 13 1 3.3462 -1.9051 0.0729 14 6 3.8092 -2.0075 2.1465 15 1 3.7976 -1.5392 3.1197 16 6 4.2395 -3.3107 2.0138 17 7 4.3719 -3.8408 0.8175 18 14 4.6345 -4.3232 3.5331 19 1 6.0664 -4.1482 3.8860 20 1 3.7868 -3.8693 4.6646 21 1 4.3646 -5.7570 3.2563 22 6 1.9996 -0.7436 1.1655 23 1 -0.3634 0.4739 0.9118 24 1 -0.3634 0.5527 -0.8665 25 1 -0.3633 -1.0267 -0.0455 26 1 1.2169 2.0184 -0.3809 27 1 2.2262 1.6310 1.0242 28 1 2.9602 1.5681 -1.9150 29 1 3.7752 2.4076 -0.5803 30 1 3.8428 -0.5355 -1.2989 31 1 5.1985 0.5793 -1.0498 32 1 5.8958 -1.5204 0.5540 33 1 5.1584 0.0392 3.0277 34 1 5.7768 -1.6361 2.8813 35 1 8.0460 -0.8859 2.5561 36 1 7.4419 0.2988 3.7589 37 1 8.4948 1.2102 1.4516 38 1 6.9853 1.9522 2.0654 39 1 7.3802 0.0325 -0.2264 40 1 6.1499 1.3114 -0.0204 41 1 4.1004 -3.3401 0.0324 42 1 1.3455 -1.5905 1.3726 43 1 2.0069 -0.0822 2.0320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250620885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:57 Heat of formation + Delta-G solvation = 21.653156 kcal Electronic energy + Delta-G solvation = -20851.596864 eV Core-core repulsion = 18124.921512 eV Total energy + Delta-G solvation = -2726.675353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.17625 -37.04800 -34.38830 -33.36625 -30.97316 -28.91698 -28.05649 -26.35632 -25.06244 -24.43911 -22.69597 -20.17202 -19.92587 -19.38259 -18.22920 -17.00241 -15.51782 -15.11870 -14.92303 -14.45858 -14.09066 -13.75165 -13.69365 -13.20302 -13.06850 -12.57300 -12.31684 -12.05866 -11.62944 -11.37494 -11.08084 -10.89170 -10.87363 -10.78587 -10.47371 -10.34126 -10.17022 -10.07796 -9.91638 -9.82960 -9.59182 -9.50824 -9.42513 -8.48648 -8.35416 -7.64205 -7.02242 -6.37063 -4.05064 3.38665 3.42293 3.57192 4.41991 4.66742 4.96509 5.36675 5.41525 5.46017 5.47669 5.58570 5.66149 5.71972 5.78155 5.99864 6.14220 6.17558 6.21546 6.23911 6.28209 6.34339 6.37916 6.44996 6.47640 6.49658 6.53275 6.61575 6.64550 6.77333 6.81423 6.93567 6.98741 7.14663 7.34663 7.49493 7.57077 7.71756 7.84849 8.03371 8.30959 8.56377 8.68028 8.87070 9.60579 10.97040 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.011481 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.523313 B = 2438.206318 C = 3710.944331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.548 5.548 3 C 0.071 3.929 4 C -0.098 4.098 5 C 0.052 3.948 6 N -0.529 5.529 7 C 0.115 3.885 8 C -0.082 4.082 9 C -0.140 4.140 10 C -0.115 4.115 11 C -0.134 4.134 12 C 0.187 3.813 13 H 0.027 0.973 14 C -0.583 4.583 15 H 0.058 0.942 16 C 0.027 3.973 17 N -0.907 5.907 18 Si 1.059 2.941 19 H -0.285 1.285 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.089 3.911 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.271 0.729 42 H 0.059 0.941 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 8.481 -0.264 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.272 5.272 3 C -0.058 4.058 4 C -0.137 4.137 5 C -0.078 4.078 6 N -0.255 5.255 7 C 0.007 3.993 8 C -0.120 4.120 9 C -0.178 4.178 10 C -0.153 4.153 11 C -0.172 4.172 12 C 0.081 3.919 13 H 0.045 0.955 14 C -0.623 4.623 15 H 0.076 0.924 16 C -0.179 4.179 17 N -0.545 5.545 18 Si 0.887 3.113 19 H -0.212 1.212 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.038 4.038 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.413 7.165 0.087 7.178 hybrid contribution -0.719 1.276 -0.401 1.518 sum -0.306 8.441 -0.314 8.452 Atomic orbital electron populations 1.22353 0.88823 1.01415 0.99131 1.61670 1.06073 1.14640 1.44786 1.21640 0.95684 0.89206 0.99259 1.21952 0.95610 0.98035 0.98114 1.21860 0.97427 0.96666 0.91836 1.62174 1.05230 1.38918 1.19130 1.21704 0.86709 0.94776 0.96086 1.22602 0.91940 1.01974 0.95455 1.22749 1.00046 0.97461 0.97525 1.22238 0.98417 0.98329 0.96307 1.22546 0.97819 0.99479 0.97306 1.18520 0.87989 0.87779 0.97597 0.95517 1.21907 1.47622 0.98734 0.93993 0.92390 1.25735 0.94107 0.95839 1.02238 1.70799 1.43097 1.42078 0.98481 0.83697 0.76726 0.76268 0.74576 1.21157 1.21247 1.21069 1.21282 0.97721 0.96099 0.88692 0.96572 0.92510 0.91914 0.93889 0.94187 0.93241 0.92973 0.95224 0.92787 0.93975 0.92062 0.89851 0.92590 0.92870 0.93288 0.92342 0.93222 0.91227 0.91577 0.92229 0.95419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.24 60.06 0.55 1.05 16 2 N -0.55 -10.50 4.52 -247.40 -1.12 -11.61 16 3 C 0.07 1.25 5.28 -4.59 -0.02 1.23 16 4 C -0.10 -1.67 6.42 -25.35 -0.16 -1.83 16 5 C 0.05 1.02 4.69 -4.55 -0.02 1.00 16 6 N -0.53 -11.46 4.06 -223.05 -0.91 -12.37 16 7 C 0.12 2.48 2.29 -66.59 -0.15 2.33 16 8 C -0.08 -1.73 4.33 -25.03 -0.11 -1.83 16 9 C -0.14 -2.45 6.91 -24.69 -0.17 -2.62 16 10 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 11 C -0.13 -2.40 5.44 -25.61 -0.14 -2.54 16 12 C 0.19 4.48 2.04 -71.49 -0.15 4.33 16 13 H 0.03 0.74 4.91 -51.93 -0.25 0.48 16 14 C -0.58 -14.86 4.45 -34.44 -0.15 -15.01 16 15 H 0.06 1.51 6.59 -52.48 -0.35 1.16 16 16 C 0.03 0.71 4.74 -17.82 -0.08 0.62 16 17 N -0.91 -25.99 13.65 55.43 0.76 -25.24 16 18 Si 1.06 24.09 29.03 -169.99 -4.93 19.15 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.09 1.95 4.34 -6.45 -0.03 1.92 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.79 7.98 -51.92 -0.41 0.38 16 25 H 0.06 0.98 8.06 -51.93 -0.42 0.57 16 26 H 0.04 0.66 7.49 -51.93 -0.39 0.27 16 27 H 0.04 0.76 7.16 -51.93 -0.37 0.39 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.66 7.16 -51.93 -0.37 0.28 16 31 H 0.05 1.00 5.04 -51.93 -0.26 0.74 16 32 H 0.04 1.06 7.81 -51.93 -0.41 0.66 16 33 H 0.06 1.34 7.59 -51.92 -0.39 0.95 16 34 H 0.08 1.94 4.83 -51.93 -0.25 1.69 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.22 5.91 -51.93 -0.31 0.91 16 41 H 0.27 7.92 6.27 -40.82 -0.26 7.66 16 42 H 0.06 1.35 7.79 -51.93 -0.40 0.95 16 43 H 0.03 0.62 7.36 -51.93 -0.38 0.24 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -26.85 306.66 -9.79 -36.64 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.41 Total: 2.19 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.81 Total: -13.39 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -1.27 Total: -49.22 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.93 Total: 19.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.85 -9.79 -36.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250620885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.296 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds