Wall clock time and date at job start Mon Mar 30 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44182 * 111.00008 * 2 1 4 4 C 1.54314 * 112.61170 * 217.52553 * 3 2 1 5 5 C 1.54330 * 111.72053 * 318.92113 * 4 3 2 6 6 N 1.44245 * 112.54107 * 318.91458 * 5 4 3 7 7 C 1.46901 * 110.95599 * 217.58219 * 6 5 4 8 8 C 1.54261 * 110.03430 * 163.71898 * 7 6 5 9 9 C 1.54971 * 104.16029 * 217.13403 * 8 7 6 10 10 C 1.54889 * 102.77531 * 37.88562 * 9 8 7 11 11 C 1.53879 * 110.03470 * 46.49535 * 7 6 5 12 12 C 1.48081 * 109.87929 * 94.44892 * 6 5 4 13 13 H 1.09005 * 108.94514 * 40.18631 * 12 6 5 14 14 C 1.50698 * 108.94729 * 158.89808 * 12 6 5 15 15 H 1.08004 * 119.99929 * 66.85138 * 14 12 6 16 16 C 1.37876 * 120.00530 * 246.84281 * 14 12 6 17 17 N 1.31516 * 119.99726 * 6.31737 * 16 14 12 18 18 Si 1.86801 * 120.00243 * 186.31178 * 16 14 12 19 19 H 1.48505 * 109.46776 * 270.00304 * 18 16 14 20 20 H 1.48489 * 109.47067 * 30.00146 * 18 16 14 21 21 H 1.48502 * 109.47124 * 150.00400 * 18 16 14 22 22 C 1.46090 * 112.08001 * 279.54277 * 12 6 5 23 23 H 1.08998 * 109.47562 * 297.46407 * 1 2 3 24 24 H 1.09008 * 109.47120 * 57.46536 * 1 2 3 25 25 H 1.09001 * 109.47151 * 177.46239 * 1 2 3 26 26 H 1.09003 * 108.85304 * 338.33138 * 3 2 1 27 27 H 1.09003 * 108.85427 * 96.81915 * 3 2 1 28 28 H 1.08995 * 109.03283 * 79.49520 * 4 3 2 29 29 H 1.08994 * 109.03102 * 198.42422 * 4 3 2 30 30 H 1.09000 * 108.85204 * 79.73373 * 5 4 3 31 31 H 1.08999 * 108.85034 * 198.21291 * 5 4 3 32 32 H 1.09003 * 110.01172 * 285.10613 * 7 6 5 33 33 H 1.09007 * 110.48360 * 335.77505 * 8 7 6 34 34 H 1.09003 * 110.49068 * 98.42434 * 8 7 6 35 35 H 1.08991 * 110.72050 * 279.57244 * 9 8 7 36 36 H 1.09004 * 110.92112 * 156.28917 * 9 8 7 37 37 H 1.09005 * 110.48707 * 203.40704 * 10 9 8 38 38 H 1.08997 * 110.60032 * 80.82035 * 10 9 8 39 39 H 1.09003 * 110.03189 * 238.56985 * 11 7 6 40 40 H 1.08997 * 110.02741 * 0.02562 * 11 7 6 41 41 H 0.97002 * 120.00016 * 355.14055 * 17 16 14 42 42 H 1.08995 * 108.94589 * 181.41828 * 22 12 6 43 43 H 1.09000 * 108.94153 * 300.13636 * 22 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9857 1.3460 0.0000 4 6 3.2530 1.4951 -0.8677 5 6 4.2079 0.2951 -0.6948 6 7 4.3117 -0.1357 0.6779 7 6 5.6854 -0.5470 0.9971 8 6 5.8762 -0.6103 2.5265 9 6 7.3209 -0.0956 2.7500 10 6 7.4478 1.0355 1.6995 11 6 6.6844 0.4987 0.4712 12 6 3.3551 -1.2366 0.9339 13 1 3.3462 -1.9051 0.0729 14 6 3.8092 -2.0075 2.1465 15 1 3.7976 -1.5392 3.1197 16 6 4.2395 -3.3107 2.0138 17 7 4.3719 -3.8408 0.8175 18 14 4.6345 -4.3232 3.5331 19 1 6.0664 -4.1482 3.8860 20 1 3.7868 -3.8693 4.6646 21 1 4.3646 -5.7570 3.2563 22 6 1.9996 -0.7436 1.1655 23 1 -0.3634 0.4739 0.9118 24 1 -0.3634 0.5527 -0.8665 25 1 -0.3633 -1.0267 -0.0455 26 1 1.2169 2.0184 -0.3809 27 1 2.2262 1.6310 1.0242 28 1 2.9602 1.5681 -1.9150 29 1 3.7752 2.4076 -0.5803 30 1 3.8428 -0.5355 -1.2989 31 1 5.1985 0.5793 -1.0498 32 1 5.8958 -1.5204 0.5540 33 1 5.1584 0.0392 3.0277 34 1 5.7768 -1.6361 2.8813 35 1 8.0460 -0.8859 2.5561 36 1 7.4419 0.2988 3.7589 37 1 8.4948 1.2102 1.4516 38 1 6.9853 1.9522 2.0654 39 1 7.3802 0.0325 -0.2264 40 1 6.1499 1.3114 -0.0204 41 1 4.1004 -3.3401 0.0324 42 1 1.3455 -1.5905 1.3726 43 1 2.0069 -0.0822 2.0320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250620885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:57 Heat of formation + Delta-G solvation = 4.541496 kcal Electronic energy + Delta-G solvation = -20852.338882 eV Core-core repulsion = 18124.921512 eV Total energy + Delta-G solvation = -2727.417370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86316 -38.57260 -36.07893 -35.12073 -32.73555 -30.51072 -29.63198 -27.88074 -26.80359 -26.05566 -24.43039 -21.80370 -21.52644 -20.97352 -19.84390 -18.91464 -17.17537 -16.85363 -16.49978 -15.99267 -15.71252 -15.46894 -15.26928 -14.79565 -14.63599 -14.09386 -13.90797 -13.70385 -13.24420 -12.89486 -12.74772 -12.59044 -12.50179 -12.32626 -12.03049 -11.92797 -11.86129 -11.61599 -11.41737 -11.37418 -11.32312 -11.24750 -10.98690 -10.50594 -10.37024 -9.16881 -8.88061 -8.49997 -6.17606 1.50966 1.57592 1.74187 2.53896 3.07235 3.17662 3.59096 3.88503 3.96292 4.08331 4.16015 4.21457 4.39160 4.42442 4.45747 4.64708 4.67227 4.71895 4.80367 4.80851 4.84017 4.89401 4.91762 4.94592 5.01484 5.05691 5.13330 5.18494 5.20665 5.26859 5.32105 5.34474 5.45654 5.60476 5.71040 5.80946 5.92691 6.19309 6.26947 6.41100 6.62233 6.66951 6.96886 7.54353 8.82043 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.011481 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.523313 B = 2438.206318 C = 3710.944331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.561 5.561 3 C 0.070 3.930 4 C -0.092 4.092 5 C 0.051 3.949 6 N -0.521 5.521 7 C 0.111 3.889 8 C -0.082 4.082 9 C -0.134 4.134 10 C -0.105 4.105 11 C -0.128 4.128 12 C 0.191 3.809 13 H -0.014 1.014 14 C -0.571 4.571 15 H 0.051 0.949 16 C -0.016 4.016 17 N -0.939 5.939 18 Si 1.096 2.904 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.290 1.290 22 C 0.101 3.899 23 H 0.026 0.974 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.073 0.927 30 H -0.004 1.004 31 H 0.068 0.932 32 H -0.007 1.007 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.254 0.746 42 H 0.042 0.958 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 11.057 0.170 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.285 5.285 3 C -0.059 4.059 4 C -0.131 4.131 5 C -0.079 4.079 6 N -0.246 5.246 7 C 0.003 3.997 8 C -0.120 4.120 9 C -0.171 4.171 10 C -0.143 4.143 11 C -0.165 4.165 12 C 0.085 3.915 13 H 0.004 0.996 14 C -0.611 4.611 15 H 0.070 0.930 16 C -0.215 4.215 17 N -0.578 5.578 18 Si 0.919 3.081 19 H -0.198 1.198 20 H -0.193 1.193 21 H -0.216 1.216 22 C -0.027 4.027 23 H 0.045 0.955 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.805 9.775 0.524 9.822 hybrid contribution -0.883 0.510 -0.581 1.174 sum -0.078 10.285 -0.057 10.286 Atomic orbital electron populations 1.22421 0.86561 1.01820 1.00828 1.61596 1.08268 1.15636 1.43017 1.21704 0.96815 0.88605 0.98755 1.21947 0.94837 0.97084 0.99267 1.21960 0.99028 0.96830 0.90064 1.62207 1.04942 1.37089 1.20356 1.21762 0.87643 0.93883 0.96462 1.22417 0.94561 1.00214 0.94813 1.22685 0.96956 0.98045 0.99456 1.22205 0.99881 0.97811 0.94366 1.22473 0.97117 0.98481 0.98467 1.18412 0.89844 0.87923 0.95334 0.99599 1.22018 1.46217 0.98720 0.94123 0.93027 1.26845 0.93936 0.97309 1.03432 1.70916 1.45792 1.42309 0.98781 0.83229 0.77576 0.74758 0.72541 1.19837 1.19327 1.21572 1.20946 0.96305 0.95728 0.89702 0.95540 0.89819 0.92430 0.90726 0.95619 0.91448 0.90808 0.98530 0.91406 0.98836 0.93126 0.92800 0.92678 0.90691 0.90484 0.91172 0.92768 0.90248 0.93416 0.93953 0.96112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.24 127.69 1.18 2.13 16 2 N -0.56 -21.14 4.52 -936.62 -4.23 -25.38 16 3 C 0.07 2.30 5.28 87.26 0.46 2.76 16 4 C -0.09 -2.92 6.42 31.49 0.20 -2.72 16 5 C 0.05 1.99 4.69 87.25 0.41 2.40 16 6 N -0.52 -22.93 4.06 -859.59 -3.49 -26.42 16 7 C 0.11 4.85 2.29 45.64 0.10 4.95 16 8 C -0.08 -3.47 4.33 31.70 0.14 -3.33 16 9 C -0.13 -4.40 6.91 31.91 0.22 -4.18 16 10 C -0.11 -3.04 6.83 31.67 0.22 -2.82 16 11 C -0.13 -4.36 5.44 31.32 0.17 -4.19 16 12 C 0.19 9.59 2.04 41.82 0.09 9.67 16 13 H -0.01 -0.80 4.91 -2.38 -0.01 -0.81 16 14 C -0.57 -30.30 4.45 25.60 0.11 -30.19 16 15 H 0.05 2.77 6.59 -2.91 -0.02 2.75 16 16 C -0.02 -0.88 4.74 84.65 0.40 -0.48 16 17 N -0.94 -56.77 13.65 21.45 0.29 -56.48 16 18 Si 1.10 49.64 29.03 68.60 1.99 51.63 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 22 C 0.10 4.53 4.34 83.95 0.36 4.89 16 23 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.08 2.08 7.98 -2.38 -0.02 2.06 16 25 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 26 H 0.07 2.00 7.49 -2.39 -0.02 1.99 16 27 H 0.03 0.92 7.16 -2.39 -0.02 0.90 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.00 -0.17 7.16 -2.39 -0.02 -0.19 16 31 H 0.07 2.46 5.04 -2.39 -0.01 2.44 16 32 H -0.01 -0.35 7.81 -2.39 -0.02 -0.37 16 33 H 0.05 2.21 7.59 -2.38 -0.02 2.19 16 34 H 0.05 2.56 4.83 -2.39 -0.01 2.55 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.56 5.91 -2.39 -0.01 2.54 16 41 H 0.25 15.95 6.27 -92.71 -0.58 15.36 16 42 H 0.04 2.00 7.79 -2.39 -0.02 1.98 16 43 H 0.02 0.95 7.36 -2.39 -0.02 0.93 16 Total: -1.00 -61.54 306.66 -0.22 -61.76 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.15 Total: 15.99 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 4.07 Total: -21.11 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -7.43 Total: -108.27 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.99 Total: 51.63 kcal Total: -61.54 -0.22 -61.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250620885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.304 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds