Wall clock time and date at job start Mon Mar 30 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46851 * 111.00356 * 2 1 4 4 C 1.53034 * 109.52465 * 174.15834 * 3 2 1 5 5 C 1.53124 * 109.27580 * 59.18000 * 4 3 2 6 6 H 1.09003 * 109.52295 * 62.25452 * 5 4 3 7 7 N 1.46906 * 109.52019 * 182.37534 * 5 4 3 8 8 C 1.48534 * 111.00212 * 304.49141 * 7 5 4 9 9 C 1.54933 * 103.22432 * 159.71915 * 8 7 5 10 10 C 1.54586 * 102.92523 * 322.59149 * 9 8 7 11 11 C 1.47903 * 111.00052 * 61.89416 * 7 5 4 12 12 C 1.53114 * 109.16213 * 302.34482 * 5 4 3 13 13 H 1.09000 * 109.50473 * 297.71008 * 12 5 4 14 14 C 1.53000 * 109.50257 * 177.63315 * 12 5 4 15 15 C 1.50699 * 109.47405 * 174.32983 * 14 12 5 16 16 H 1.08008 * 119.99619 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00310 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46825 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46936 * 120.00060 * 19 17 15 22 22 H 1.48505 * 109.47225 * 240.00288 * 19 17 15 23 23 C 1.46850 * 110.99970 * 235.78922 * 2 1 3 24 24 H 1.09000 * 109.46756 * 56.03876 * 1 2 3 25 25 H 1.09000 * 109.46996 * 176.04279 * 1 2 3 26 26 H 1.08997 * 109.46605 * 296.04531 * 1 2 3 27 27 H 1.08995 * 109.46128 * 294.17585 * 3 2 1 28 28 H 1.09006 * 109.45914 * 54.15479 * 3 2 1 29 29 H 1.08998 * 109.50454 * 179.11765 * 4 3 2 30 30 H 1.09001 * 109.50945 * 299.24307 * 4 3 2 31 31 H 1.08997 * 110.66986 * 278.16208 * 8 7 5 32 32 H 1.09001 * 110.66197 * 41.28936 * 8 7 5 33 33 H 1.09001 * 110.72156 * 204.22591 * 9 8 7 34 34 H 1.09004 * 110.72247 * 80.94870 * 9 8 7 35 35 H 1.09007 * 110.30840 * 263.03938 * 10 9 8 36 36 H 1.09003 * 110.39488 * 140.92127 * 10 9 8 37 37 H 1.08999 * 109.91521 * 333.50336 * 11 7 5 38 38 H 1.08996 * 109.91522 * 94.60006 * 11 7 5 39 39 H 1.08998 * 109.47673 * 294.33343 * 14 12 5 40 40 H 1.09001 * 109.46930 * 54.33006 * 14 12 5 41 41 H 0.96993 * 120.00030 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46444 * 305.86022 * 23 2 1 43 43 H 1.09002 * 109.45831 * 65.82756 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5368 -1.0144 6 1 3.8888 1.0354 -1.9560 7 7 5.5759 0.4498 -0.8482 8 6 6.1791 1.8013 -0.7227 9 6 7.5450 1.5185 -0.0484 10 6 7.2117 0.3816 0.9446 11 6 5.9254 -0.2652 0.3985 12 6 3.5181 -0.8715 -1.0208 13 1 3.7814 -1.3837 -0.0954 14 6 4.0687 -1.6562 -2.2133 15 6 3.5873 -3.0824 -2.1417 16 1 2.9518 -3.3976 -1.3273 17 6 3.9581 -3.9850 -3.1158 18 7 4.7324 -3.6014 -4.1072 19 14 3.3619 -5.7531 -3.0266 20 1 2.5117 -5.9285 -1.8218 21 1 2.5704 -6.0704 -4.2423 22 1 4.5304 -6.6659 -2.9443 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3633 0.5741 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3632 0.4512 0.9233 27 1 1.7326 1.8608 -0.9375 28 1 1.5636 1.9257 0.8331 29 1 3.9100 2.3511 0.1310 30 1 3.7815 0.8566 1.0906 31 1 6.3208 2.2521 -1.7049 32 1 5.5628 2.4403 -0.0903 33 1 7.9035 2.4010 0.4816 34 1 8.2769 1.1856 -0.7844 35 1 7.0371 0.7885 1.9407 36 1 8.0205 -0.3486 0.9714 37 1 5.1196 -0.1603 1.1250 38 1 6.0981 -1.3201 0.1855 39 1 3.7198 -1.2011 -3.1402 40 1 5.1583 -1.6388 -2.1878 41 1 4.9936 -4.2365 -4.7923 42 1 1.5634 -1.7716 -1.1243 43 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:39 Heat of formation + Delta-G solvation = 3.200028 kcal Electronic energy + Delta-G solvation = -20087.773361 eV Core-core repulsion = 17360.297821 eV Total energy + Delta-G solvation = -2727.475540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78304 -37.39301 -34.03878 -32.78683 -31.09174 -29.57198 -28.54628 -26.75365 -25.45418 -23.54179 -22.66000 -20.86976 -20.76604 -20.12841 -18.31940 -16.29292 -15.96713 -15.57911 -14.85958 -14.79757 -14.34287 -14.10961 -13.64041 -13.47768 -13.07768 -12.65241 -12.31652 -11.98312 -11.96871 -11.69972 -11.64512 -11.23226 -11.13186 -11.01049 -10.85752 -10.82683 -10.76023 -10.60447 -10.28962 -10.19372 -9.82339 -9.61648 -9.11971 -8.77811 -8.23316 -7.94716 -7.71681 -5.88057 -3.89062 3.36386 3.44213 3.48000 4.30914 4.44796 4.54456 4.92923 4.99030 5.16296 5.22074 5.28141 5.38914 5.47548 5.54187 5.60261 5.69866 5.72308 5.74232 5.88243 5.93469 6.01042 6.02888 6.04112 6.07745 6.13799 6.25188 6.25692 6.30800 6.41743 6.48200 6.58402 6.78329 6.96470 7.19525 7.38048 7.51069 7.54274 7.63413 7.87138 8.05615 8.20673 8.56364 9.19174 9.73562 11.22836 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.008097 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.049137 B = 3457.221100 C = 4773.093761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.548 5.548 3 C 0.064 3.936 4 C -0.152 4.152 5 C 0.081 3.919 6 H 0.073 0.927 7 N -0.495 5.495 8 C 0.025 3.975 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.033 3.967 12 C -0.066 4.066 13 H 0.066 0.934 14 C 0.035 3.965 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.884 3.116 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.285 1.285 23 C 0.069 3.931 24 H 0.020 0.980 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.009 0.991 40 H 0.037 0.963 41 H 0.257 0.743 42 H 0.085 0.915 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 11.540 9.266 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.065 4.065 4 C -0.191 4.191 5 C -0.028 4.028 6 H 0.091 0.909 7 N -0.217 5.217 8 C -0.102 4.102 9 C -0.160 4.160 10 C -0.169 4.169 11 C -0.095 4.095 12 C -0.085 4.085 13 H 0.084 0.916 14 C -0.003 4.003 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.712 3.288 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.212 1.212 23 C -0.058 4.058 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.027 0.973 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.463 10.958 9.068 14.231 hybrid contribution -1.010 -0.190 -0.129 1.035 sum -1.473 10.768 8.938 14.072 Atomic orbital electron populations 1.22298 0.88232 1.01774 0.99796 1.62024 1.06819 1.12989 1.45413 1.21926 0.95218 0.89833 0.99484 1.22336 0.95198 1.00248 1.01348 1.22004 0.86554 0.97725 0.96544 0.90874 1.64980 1.10066 1.12295 1.34370 1.23322 0.94769 0.92020 1.00133 1.22441 0.97451 0.97795 0.98283 1.22399 0.98329 0.97969 0.98175 1.22905 0.95622 1.00052 0.90936 1.21299 0.92066 0.92838 1.02314 0.91608 1.19049 0.97479 0.93032 0.90693 1.21341 1.30076 0.95245 1.08600 0.92833 1.24986 0.95375 0.98306 0.95684 1.69989 1.36049 1.34532 1.12700 0.86666 0.78550 0.85768 0.77778 1.19845 1.21252 1.21173 1.22204 0.96509 0.97873 0.89210 0.96187 0.91421 0.92186 0.95430 0.91780 0.92004 0.90978 0.90628 0.93685 0.91848 0.90901 0.92249 0.91341 0.93337 0.89802 0.97297 0.94491 0.93312 0.89649 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.62 60.06 0.58 0.96 16 2 N -0.55 -9.01 4.91 -242.96 -1.19 -10.20 16 3 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 4 C -0.15 -2.25 4.66 -26.65 -0.12 -2.38 16 5 C 0.08 1.43 1.86 -67.59 -0.13 1.30 16 6 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 7 N -0.49 -8.59 4.60 -222.35 -1.02 -9.61 16 8 C 0.03 0.36 6.37 -1.90 -0.01 0.34 16 9 C -0.12 -1.51 7.06 -24.88 -0.18 -1.69 16 10 C -0.13 -1.70 6.93 -25.38 -0.18 -1.88 16 11 C 0.03 0.53 5.11 -2.76 -0.01 0.51 16 12 C -0.07 -1.37 1.56 -90.54 -0.14 -1.51 16 13 H 0.07 1.44 6.86 -51.93 -0.36 1.08 16 14 C 0.03 0.90 4.38 -27.88 -0.12 0.78 16 15 C -0.51 -14.41 8.43 -34.44 -0.29 -14.70 16 16 H 0.05 1.47 7.12 -52.48 -0.37 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 19 Si 0.88 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 C 0.07 1.35 4.55 -3.83 -0.02 1.33 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.06 0.81 6.12 -51.93 -0.32 0.50 16 30 H 0.07 1.11 6.02 -51.93 -0.31 0.80 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.58 5.55 -51.93 -0.29 0.29 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.78 5.29 -51.93 -0.27 0.50 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.04 1.04 7.52 -51.93 -0.39 0.65 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.80 6.93 -51.93 -0.36 1.44 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -29.82 318.66 -10.16 -39.98 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.72 Total: -0.99 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.74 Total: -14.46 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -1.48 Total: -46.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.82 -10.16 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.179 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds