Wall clock time and date at job start Mon Mar 30 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46851 * 111.00356 * 2 1 4 4 C 1.53034 * 109.52465 * 174.15834 * 3 2 1 5 5 C 1.53124 * 109.27580 * 59.18000 * 4 3 2 6 6 H 1.09003 * 109.52295 * 62.25452 * 5 4 3 7 7 N 1.46906 * 109.52019 * 182.37534 * 5 4 3 8 8 C 1.48534 * 111.00212 * 304.49141 * 7 5 4 9 9 C 1.54933 * 103.22432 * 159.71915 * 8 7 5 10 10 C 1.54586 * 102.92523 * 322.59149 * 9 8 7 11 11 C 1.47903 * 111.00052 * 61.89416 * 7 5 4 12 12 C 1.53114 * 109.16213 * 302.34482 * 5 4 3 13 13 H 1.09000 * 109.50473 * 297.71008 * 12 5 4 14 14 C 1.53000 * 109.50257 * 177.63315 * 12 5 4 15 15 C 1.50699 * 109.47405 * 174.32983 * 14 12 5 16 16 H 1.08008 * 119.99619 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00310 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46825 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46936 * 120.00060 * 19 17 15 22 22 H 1.48505 * 109.47225 * 240.00288 * 19 17 15 23 23 C 1.46850 * 110.99970 * 235.78922 * 2 1 3 24 24 H 1.09000 * 109.46756 * 56.03876 * 1 2 3 25 25 H 1.09000 * 109.46996 * 176.04279 * 1 2 3 26 26 H 1.08997 * 109.46605 * 296.04531 * 1 2 3 27 27 H 1.08995 * 109.46128 * 294.17585 * 3 2 1 28 28 H 1.09006 * 109.45914 * 54.15479 * 3 2 1 29 29 H 1.08998 * 109.50454 * 179.11765 * 4 3 2 30 30 H 1.09001 * 109.50945 * 299.24307 * 4 3 2 31 31 H 1.08997 * 110.66986 * 278.16208 * 8 7 5 32 32 H 1.09001 * 110.66197 * 41.28936 * 8 7 5 33 33 H 1.09001 * 110.72156 * 204.22591 * 9 8 7 34 34 H 1.09004 * 110.72247 * 80.94870 * 9 8 7 35 35 H 1.09007 * 110.30840 * 263.03938 * 10 9 8 36 36 H 1.09003 * 110.39488 * 140.92127 * 10 9 8 37 37 H 1.08999 * 109.91521 * 333.50336 * 11 7 5 38 38 H 1.08996 * 109.91522 * 94.60006 * 11 7 5 39 39 H 1.08998 * 109.47673 * 294.33343 * 14 12 5 40 40 H 1.09001 * 109.46930 * 54.33006 * 14 12 5 41 41 H 0.96993 * 120.00030 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46444 * 305.86022 * 23 2 1 43 43 H 1.09002 * 109.45831 * 65.82756 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5368 -1.0144 6 1 3.8888 1.0354 -1.9560 7 7 5.5759 0.4498 -0.8482 8 6 6.1791 1.8013 -0.7227 9 6 7.5450 1.5185 -0.0484 10 6 7.2117 0.3816 0.9446 11 6 5.9254 -0.2652 0.3985 12 6 3.5181 -0.8715 -1.0208 13 1 3.7814 -1.3837 -0.0954 14 6 4.0687 -1.6562 -2.2133 15 6 3.5873 -3.0824 -2.1417 16 1 2.9518 -3.3976 -1.3273 17 6 3.9581 -3.9850 -3.1158 18 7 4.7324 -3.6014 -4.1072 19 14 3.3619 -5.7531 -3.0266 20 1 2.5117 -5.9285 -1.8218 21 1 2.5704 -6.0704 -4.2423 22 1 4.5304 -6.6659 -2.9443 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3633 0.5741 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3632 0.4512 0.9233 27 1 1.7326 1.8608 -0.9375 28 1 1.5636 1.9257 0.8331 29 1 3.9100 2.3511 0.1310 30 1 3.7815 0.8566 1.0906 31 1 6.3208 2.2521 -1.7049 32 1 5.5628 2.4403 -0.0903 33 1 7.9035 2.4010 0.4816 34 1 8.2769 1.1856 -0.7844 35 1 7.0371 0.7885 1.9407 36 1 8.0205 -0.3486 0.9714 37 1 5.1196 -0.1603 1.1250 38 1 6.0981 -1.3201 0.1855 39 1 3.7198 -1.2011 -3.1402 40 1 5.1583 -1.6388 -2.1878 41 1 4.9936 -4.2365 -4.7923 42 1 1.5634 -1.7716 -1.1243 43 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259363746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:38 Heat of formation + Delta-G solvation = -16.749390 kcal Electronic energy + Delta-G solvation = -20088.638433 eV Core-core repulsion = 17360.297821 eV Total energy + Delta-G solvation = -2728.340612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13782 -38.65693 -35.78506 -34.43671 -32.83939 -30.77288 -29.72261 -28.65038 -26.76662 -25.28082 -24.05516 -22.29442 -22.06842 -21.48332 -19.80994 -18.36809 -17.35122 -16.81897 -16.54208 -16.11024 -15.97298 -15.38478 -15.07612 -14.74830 -14.49005 -13.97669 -13.85059 -13.71037 -13.44685 -13.20429 -13.00554 -12.83401 -12.57459 -12.49184 -12.31746 -12.20881 -12.13465 -11.94379 -11.89663 -11.61019 -11.42395 -11.20451 -11.04140 -10.70616 -10.48571 -9.25619 -9.01135 -8.12620 -6.21812 1.38803 1.39490 1.52256 2.43434 3.02993 3.17983 3.21811 3.76676 3.81392 3.95357 4.03365 4.11666 4.17384 4.26479 4.37918 4.48415 4.55325 4.57381 4.63782 4.67408 4.78116 4.81404 4.86936 4.95643 4.97791 5.00204 5.03838 5.05260 5.13847 5.19312 5.25062 5.35537 5.37417 5.44422 5.60367 5.88484 5.96709 6.13150 6.17933 6.25461 6.32349 6.35548 6.95945 7.45638 8.98966 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.008097 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.049137 B = 3457.221100 C = 4773.093761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.062 3.938 4 C -0.140 4.140 5 C 0.087 3.913 6 H 0.056 0.944 7 N -0.529 5.529 8 C 0.025 3.975 9 C -0.115 4.115 10 C -0.124 4.124 11 C 0.035 3.965 12 C -0.055 4.055 13 H 0.053 0.947 14 C 0.050 3.950 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.956 3.044 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.081 3.919 24 H 0.025 0.975 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.045 0.955 39 H -0.025 1.025 40 H 0.004 0.996 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 12.824 11.320 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.066 4.066 4 C -0.179 4.179 5 C -0.022 4.022 6 H 0.075 0.925 7 N -0.252 5.252 8 C -0.102 4.102 9 C -0.153 4.153 10 C -0.162 4.162 11 C -0.093 4.093 12 C -0.074 4.074 13 H 0.071 0.929 14 C 0.012 3.988 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.781 3.219 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.206 1.206 23 C -0.047 4.047 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.063 0.937 39 H -0.007 1.007 40 H 0.023 0.977 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -1.156 12.257 11.139 16.602 hybrid contribution -0.788 -0.575 -0.800 1.262 sum -1.944 11.681 10.339 15.720 Atomic orbital electron populations 1.22384 0.86317 1.02011 1.01437 1.61990 1.08617 1.14079 1.43263 1.22053 0.94952 0.88797 1.00800 1.22228 0.95400 1.00878 0.99370 1.21787 0.87320 0.95722 0.97406 0.92530 1.64860 1.09901 1.14849 1.35552 1.23402 0.95705 0.90377 1.00695 1.22444 0.96244 0.98707 0.97947 1.22379 0.96396 0.98066 0.99377 1.22812 0.97614 0.98223 0.90669 1.21029 0.93276 0.94227 0.98872 0.92886 1.18791 0.95392 0.93073 0.91523 1.21692 1.29873 0.96426 1.08577 0.92664 1.25895 0.95462 1.03108 0.95244 1.70130 1.37360 1.36249 1.13567 0.85535 0.78202 0.79907 0.78231 1.18708 1.20528 1.20622 1.21886 0.95359 0.97333 0.90158 0.95621 0.91894 0.89447 0.95368 0.88667 0.89401 0.91068 0.90936 0.91710 0.88610 0.91960 0.89714 0.91346 0.92998 0.93682 1.00650 0.97723 0.93135 0.91894 0.96836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.62 127.69 1.23 1.90 16 2 N -0.55 -17.47 4.91 -922.58 -4.53 -22.00 16 3 C 0.06 1.64 5.46 86.32 0.47 2.11 16 4 C -0.14 -3.83 4.66 30.65 0.14 -3.68 16 5 C 0.09 3.11 1.86 44.99 0.08 3.19 16 6 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 7 N -0.53 -18.62 4.60 -857.39 -3.94 -22.56 16 8 C 0.03 0.67 6.37 86.65 0.55 1.22 16 9 C -0.12 -2.62 7.06 31.80 0.22 -2.40 16 10 C -0.12 -3.03 6.93 31.47 0.22 -2.81 16 11 C 0.03 1.13 5.11 86.44 0.44 1.57 16 12 C -0.05 -2.37 1.56 -10.74 -0.02 -2.38 16 13 H 0.05 2.41 6.86 -2.39 -0.02 2.39 16 14 C 0.05 2.74 4.38 29.85 0.13 2.87 16 15 C -0.53 -30.78 8.43 25.60 0.22 -30.57 16 16 H 0.06 3.14 7.12 -2.91 -0.02 3.11 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 19 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 C 0.08 3.22 4.55 86.33 0.39 3.61 16 24 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 1.65 8.02 -2.39 -0.02 1.63 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 2.00 8.12 -2.38 -0.02 1.98 16 29 H 0.09 1.98 6.12 -2.39 -0.01 1.97 16 30 H 0.07 2.00 6.02 -2.39 -0.01 1.99 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.46 5.55 -2.39 -0.01 1.44 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.63 5.29 -2.39 -0.01 1.62 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 40 H 0.00 0.27 7.52 -2.39 -0.02 0.25 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.06 2.74 6.93 -2.39 -0.02 2.72 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -67.41 318.66 -0.66 -68.07 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.95 Total: 11.97 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.55 Total: -24.89 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -8.19 Total: -102.93 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.41 -0.66 -68.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.322 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds