Wall clock time and date at job start Mon Mar 30 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46841 * 111.00214 * 2 1 4 4 C 1.53041 * 109.52422 * 185.84111 * 3 2 1 5 5 C 1.53118 * 109.27781 * 300.82281 * 4 3 2 6 6 H 1.08998 * 109.52078 * 297.68329 * 5 4 3 7 7 N 1.46898 * 109.52066 * 177.55747 * 5 4 3 8 8 C 1.48541 * 111.00073 * 58.66300 * 7 5 4 9 9 C 1.54939 * 103.22481 * 159.71977 * 8 7 5 10 10 C 1.54598 * 102.92172 * 322.58210 * 9 8 7 11 11 C 1.47903 * 110.99553 * 176.05613 * 7 5 4 12 12 C 1.53116 * 109.16125 * 57.65151 * 5 4 3 13 13 H 1.08998 * 109.50543 * 182.40439 * 12 5 4 14 14 C 1.53003 * 109.50401 * 62.32897 * 12 5 4 15 15 C 1.50697 * 109.47022 * 174.22208 * 14 12 5 16 16 H 1.07995 * 120.00440 * 359.97438 * 15 14 12 17 17 C 1.37879 * 120.00026 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99945 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00402 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47117 * 89.99657 * 19 17 15 21 21 H 1.48502 * 109.47223 * 210.00361 * 19 17 15 22 22 H 1.48503 * 109.46688 * 329.99832 * 19 17 15 23 23 C 1.46843 * 111.00015 * 124.21247 * 2 1 3 24 24 H 1.09002 * 109.46694 * 295.79537 * 1 2 3 25 25 H 1.09004 * 109.47114 * 55.78573 * 1 2 3 26 26 H 1.08989 * 109.47330 * 175.78967 * 1 2 3 27 27 H 1.08990 * 109.46545 * 65.82266 * 3 2 1 28 28 H 1.09006 * 109.46508 * 305.85511 * 3 2 1 29 29 H 1.08998 * 109.50263 * 180.87362 * 4 3 2 30 30 H 1.09004 * 109.49900 * 60.76275 * 4 3 2 31 31 H 1.09001 * 110.66367 * 278.15259 * 8 7 5 32 32 H 1.08998 * 110.66320 * 41.28434 * 8 7 5 33 33 H 1.09000 * 110.71768 * 204.23163 * 9 8 7 34 34 H 1.08998 * 110.87804 * 81.01532 * 9 8 7 35 35 H 1.08994 * 110.31301 * 263.04103 * 10 9 8 36 36 H 1.08997 * 110.38980 * 140.91452 * 10 9 8 37 37 H 1.08993 * 109.91912 * 333.50653 * 11 7 5 38 38 H 1.09004 * 109.91493 * 94.60810 * 11 7 5 39 39 H 1.09003 * 109.46970 * 294.22163 * 14 12 5 40 40 H 1.08995 * 109.47110 * 54.21657 * 14 12 5 41 41 H 0.97003 * 120.00659 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46510 * 54.14144 * 23 2 1 43 43 H 1.08998 * 109.45986 * 294.17360 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5368 1.0143 6 1 3.8898 1.0359 1.9558 7 7 5.5757 0.4484 0.8472 8 6 6.1887 1.8004 0.7967 9 6 7.6728 1.5301 1.1502 10 6 7.5763 0.4210 2.2228 11 6 6.2008 -0.2349 2.0004 12 6 3.5182 -0.8716 1.0207 13 1 3.9099 -1.4305 1.8706 14 6 3.8884 -1.5909 -0.2779 15 6 3.4192 -3.0214 -0.2112 16 1 2.9084 -3.3817 0.6695 17 6 3.6420 -3.8703 -1.2746 18 7 4.2644 -3.4317 -2.3469 19 14 3.0610 -5.6437 -1.1917 20 1 1.6792 -5.7375 -1.7272 21 1 3.9651 -6.4992 -2.0017 22 1 3.0771 -6.1043 0.2200 23 6 1.9953 -0.7708 1.1337 24 1 -0.3633 0.4472 0.9253 25 1 -0.3633 0.5779 -0.8498 26 1 -0.3633 -1.0248 -0.0754 27 1 1.7326 1.8608 0.9375 28 1 1.5635 1.9257 -0.8330 29 1 3.9100 2.3511 -0.1312 30 1 3.7814 0.8566 -1.0907 31 1 6.1026 2.2246 -0.2037 32 1 5.7309 2.4582 1.5354 33 1 8.1404 2.4248 1.5615 34 1 8.2217 1.1761 0.2775 35 1 7.6317 0.8545 3.2213 36 1 8.3715 -0.3115 2.0843 37 1 5.5810 -0.1078 2.8880 38 1 6.3230 -1.2958 1.7818 39 1 3.4097 -1.0903 -1.1197 40 1 4.9701 -1.5690 -0.4097 41 1 4.4209 -4.0288 -3.0952 42 1 1.5634 -1.7715 1.1242 43 1 1.7325 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:42 Heat of formation + Delta-G solvation = 4.249075 kcal Electronic energy + Delta-G solvation = -20206.417368 eV Core-core repulsion = 17478.987317 eV Total energy + Delta-G solvation = -2727.430050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.53769 -37.49112 -33.82167 -32.61826 -30.87227 -29.67093 -28.47079 -26.72075 -25.41987 -23.17777 -22.35378 -21.61276 -20.47474 -20.18476 -17.77406 -16.29007 -15.85945 -15.57730 -14.76820 -14.48227 -14.19919 -14.12175 -13.66028 -13.38972 -12.93336 -12.67406 -12.22545 -11.98357 -11.88607 -11.77432 -11.62416 -11.20999 -11.07066 -10.92282 -10.78319 -10.69252 -10.56760 -10.44926 -10.33115 -10.18335 -9.75069 -9.38113 -9.01811 -8.67153 -8.08281 -7.79954 -7.61052 -5.74980 -3.73357 3.43215 3.49469 3.51569 4.36743 4.51571 4.63833 4.93698 4.94767 5.17435 5.33251 5.50745 5.52359 5.58085 5.60806 5.68309 5.76507 5.78687 5.82880 5.92956 5.98868 6.01003 6.04975 6.05986 6.12443 6.21027 6.26442 6.30804 6.34128 6.44040 6.51343 6.67593 6.84343 6.86885 7.34901 7.40305 7.66054 7.70018 7.75661 8.01904 8.34335 8.41319 8.71830 9.34945 9.86358 11.36188 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.008456 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.123951 B = 3310.397475 C = 4494.312644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.524 5.524 3 C 0.063 3.937 4 C -0.109 4.109 5 C 0.086 3.914 6 H 0.019 0.981 7 N -0.495 5.495 8 C 0.034 3.966 9 C -0.122 4.122 10 C -0.130 4.130 11 C 0.039 3.961 12 C -0.073 4.073 13 H 0.055 0.945 14 C 0.044 3.956 15 C -0.505 4.505 16 H 0.046 0.954 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.880 3.120 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.076 3.924 24 H 0.012 0.988 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.255 0.745 42 H 0.084 0.916 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 11.430 7.770 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.248 5.248 3 C -0.066 4.066 4 C -0.147 4.147 5 C -0.023 4.023 6 H 0.037 0.963 7 N -0.218 5.218 8 C -0.094 4.094 9 C -0.160 4.160 10 C -0.168 4.168 11 C -0.089 4.089 12 C -0.092 4.092 13 H 0.073 0.927 14 C 0.007 3.993 15 C -0.544 4.544 16 H 0.064 0.936 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.708 3.292 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.052 4.052 24 H 0.031 0.969 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 0.868 10.847 6.692 12.774 hybrid contribution -0.888 -0.247 1.566 1.817 sum -0.020 10.599 8.258 13.437 Atomic orbital electron populations 1.22295 0.88344 1.02107 0.99065 1.61764 1.06291 1.12287 1.44461 1.22001 0.95737 0.89830 0.99001 1.21650 0.93625 0.98464 1.00978 1.21915 0.87130 0.97849 0.95391 0.96312 1.64791 1.03995 1.13490 1.39570 1.23213 0.93942 0.91574 1.00686 1.22453 0.96570 0.97898 0.99116 1.22397 0.97937 0.98153 0.98359 1.22813 0.93634 1.00482 0.91925 1.21331 0.92086 0.92985 1.02822 0.92662 1.18980 0.97206 0.92856 0.90232 1.21276 1.36070 0.96295 1.00763 0.93625 1.24914 0.95788 0.97699 0.95803 1.69976 1.42566 1.35107 1.05671 0.86806 0.78485 0.86234 0.77637 1.21033 1.21550 1.20292 1.22060 0.96742 0.97986 0.88453 0.96937 0.92072 0.91319 0.96401 0.91335 0.92916 0.88983 0.90269 0.94774 0.91836 0.90705 0.92274 0.91198 0.94629 0.89654 0.94837 0.95381 0.93511 0.89809 0.97672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.59 60.07 0.58 1.05 16 2 N -0.52 -9.81 4.10 -242.97 -1.00 -10.80 16 3 C 0.06 1.02 5.46 -3.84 -0.02 1.00 16 4 C -0.11 -1.87 4.78 -26.65 -0.13 -2.00 16 5 C 0.09 1.54 1.40 -67.59 -0.09 1.45 16 6 H 0.02 0.33 7.98 -51.93 -0.41 -0.08 16 7 N -0.49 -8.69 4.15 -222.35 -0.92 -9.62 16 8 C 0.03 0.48 5.37 -1.89 -0.01 0.47 16 9 C -0.12 -1.54 7.06 -24.87 -0.18 -1.71 16 10 C -0.13 -1.69 6.93 -25.37 -0.18 -1.87 16 11 C 0.04 0.64 5.57 -2.75 -0.02 0.62 16 12 C -0.07 -1.53 1.95 -90.54 -0.18 -1.70 16 13 H 0.06 1.18 7.40 -51.93 -0.38 0.79 16 14 C 0.04 1.14 3.82 -27.88 -0.11 1.04 16 15 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 16 H 0.05 1.27 7.13 -52.49 -0.37 0.89 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 19 Si 0.88 22.22 29.54 -169.99 -5.02 17.20 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.08 1.47 4.73 -3.84 -0.02 1.46 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.07 1.09 8.14 -51.94 -0.42 0.67 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 29 H 0.05 0.78 7.05 -51.93 -0.37 0.41 16 30 H 0.09 1.87 6.72 -51.93 -0.35 1.52 16 31 H 0.08 1.11 7.72 -51.93 -0.40 0.71 16 32 H 0.03 0.46 8.01 -51.93 -0.42 0.04 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.55 7.65 -51.93 -0.40 0.16 16 38 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.03 0.95 6.16 -51.93 -0.32 0.63 16 40 H 0.03 0.80 7.36 -51.93 -0.38 0.41 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.77 6.98 -51.93 -0.36 1.41 16 43 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 320.84 15.07 4.83 4.83 Total: -1.00 -30.75 320.84 -10.04 -40.80 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.95 Total: -2.44 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.73 Total: -13.22 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -1.18 Total: -47.16 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.75 -10.04 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.045 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds