Wall clock time and date at job start Mon Mar 30 2020 04:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46841 * 111.00214 * 2 1 4 4 C 1.53041 * 109.52422 * 185.84111 * 3 2 1 5 5 C 1.53118 * 109.27781 * 300.82281 * 4 3 2 6 6 H 1.08998 * 109.52078 * 297.68329 * 5 4 3 7 7 N 1.46898 * 109.52066 * 177.55747 * 5 4 3 8 8 C 1.48541 * 111.00073 * 58.66300 * 7 5 4 9 9 C 1.54939 * 103.22481 * 159.71977 * 8 7 5 10 10 C 1.54598 * 102.92172 * 322.58210 * 9 8 7 11 11 C 1.47903 * 110.99553 * 176.05613 * 7 5 4 12 12 C 1.53116 * 109.16125 * 57.65151 * 5 4 3 13 13 H 1.08998 * 109.50543 * 182.40439 * 12 5 4 14 14 C 1.53003 * 109.50401 * 62.32897 * 12 5 4 15 15 C 1.50697 * 109.47022 * 174.22208 * 14 12 5 16 16 H 1.07995 * 120.00440 * 359.97438 * 15 14 12 17 17 C 1.37879 * 120.00026 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99945 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00402 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47117 * 89.99657 * 19 17 15 21 21 H 1.48502 * 109.47223 * 210.00361 * 19 17 15 22 22 H 1.48503 * 109.46688 * 329.99832 * 19 17 15 23 23 C 1.46843 * 111.00015 * 124.21247 * 2 1 3 24 24 H 1.09002 * 109.46694 * 295.79537 * 1 2 3 25 25 H 1.09004 * 109.47114 * 55.78573 * 1 2 3 26 26 H 1.08989 * 109.47330 * 175.78967 * 1 2 3 27 27 H 1.08990 * 109.46545 * 65.82266 * 3 2 1 28 28 H 1.09006 * 109.46508 * 305.85511 * 3 2 1 29 29 H 1.08998 * 109.50263 * 180.87362 * 4 3 2 30 30 H 1.09004 * 109.49900 * 60.76275 * 4 3 2 31 31 H 1.09001 * 110.66367 * 278.15259 * 8 7 5 32 32 H 1.08998 * 110.66320 * 41.28434 * 8 7 5 33 33 H 1.09000 * 110.71768 * 204.23163 * 9 8 7 34 34 H 1.08998 * 110.87804 * 81.01532 * 9 8 7 35 35 H 1.08994 * 110.31301 * 263.04103 * 10 9 8 36 36 H 1.08997 * 110.38980 * 140.91452 * 10 9 8 37 37 H 1.08993 * 109.91912 * 333.50653 * 11 7 5 38 38 H 1.09004 * 109.91493 * 94.60810 * 11 7 5 39 39 H 1.09003 * 109.46970 * 294.22163 * 14 12 5 40 40 H 1.08995 * 109.47110 * 54.21657 * 14 12 5 41 41 H 0.97003 * 120.00659 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46510 * 54.14144 * 23 2 1 43 43 H 1.08998 * 109.45986 * 294.17360 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1189 0.5368 1.0143 6 1 3.8898 1.0359 1.9558 7 7 5.5757 0.4484 0.8472 8 6 6.1887 1.8004 0.7967 9 6 7.6728 1.5301 1.1502 10 6 7.5763 0.4210 2.2228 11 6 6.2008 -0.2349 2.0004 12 6 3.5182 -0.8716 1.0207 13 1 3.9099 -1.4305 1.8706 14 6 3.8884 -1.5909 -0.2779 15 6 3.4192 -3.0214 -0.2112 16 1 2.9084 -3.3817 0.6695 17 6 3.6420 -3.8703 -1.2746 18 7 4.2644 -3.4317 -2.3469 19 14 3.0610 -5.6437 -1.1917 20 1 1.6792 -5.7375 -1.7272 21 1 3.9651 -6.4992 -2.0017 22 1 3.0771 -6.1043 0.2200 23 6 1.9953 -0.7708 1.1337 24 1 -0.3633 0.4472 0.9253 25 1 -0.3633 0.5779 -0.8498 26 1 -0.3633 -1.0248 -0.0754 27 1 1.7326 1.8608 0.9375 28 1 1.5635 1.9257 -0.8330 29 1 3.9100 2.3511 -0.1312 30 1 3.7814 0.8566 -1.0907 31 1 6.1026 2.2246 -0.2037 32 1 5.7309 2.4582 1.5354 33 1 8.1404 2.4248 1.5615 34 1 8.2217 1.1761 0.2775 35 1 7.6317 0.8545 3.2213 36 1 8.3715 -0.3115 2.0843 37 1 5.5810 -0.1078 2.8880 38 1 6.3230 -1.2958 1.7818 39 1 3.4097 -1.0903 -1.1197 40 1 4.9701 -1.5690 -0.4097 41 1 4.4209 -4.0288 -3.0952 42 1 1.5634 -1.7715 1.1242 43 1 1.7325 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259363749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:41 Heat of formation + Delta-G solvation = -15.552135 kcal Electronic energy + Delta-G solvation = -20207.276012 eV Core-core repulsion = 17478.987317 eV Total energy + Delta-G solvation = -2728.288695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93591 -38.77888 -35.50299 -34.41983 -32.58753 -30.93646 -29.65196 -28.66625 -26.76128 -25.03464 -23.74169 -23.18064 -21.76304 -21.33334 -19.38923 -18.32808 -17.29507 -16.79347 -16.45921 -16.14481 -15.68811 -15.57206 -15.05884 -14.73830 -14.30797 -14.01742 -13.81538 -13.74429 -13.32293 -13.13167 -12.95362 -12.81600 -12.66989 -12.48844 -12.29963 -12.17520 -12.11416 -11.91765 -11.79026 -11.43141 -11.38348 -11.16328 -10.89443 -10.65330 -10.33260 -9.11346 -8.98062 -8.01899 -6.07647 1.40461 1.41609 1.51250 2.49085 3.10893 3.18195 3.31220 3.75854 3.82087 4.02491 4.07408 4.12753 4.27206 4.35511 4.40947 4.42842 4.49181 4.66428 4.67633 4.69416 4.72749 4.76245 4.87511 4.95383 4.99399 5.03649 5.05228 5.08051 5.13499 5.21051 5.27599 5.36491 5.40030 5.55744 5.73018 6.12367 6.16848 6.20750 6.33938 6.36157 6.40248 6.49545 7.12388 7.56623 9.09517 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.008456 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.123951 B = 3310.397475 C = 4494.312644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.558 5.558 3 C 0.065 3.935 4 C -0.103 4.103 5 C 0.093 3.907 6 H 0.036 0.964 7 N -0.528 5.528 8 C 0.034 3.966 9 C -0.117 4.117 10 C -0.124 4.124 11 C 0.038 3.962 12 C -0.069 4.069 13 H 0.044 0.956 14 C 0.067 3.933 15 C -0.518 4.518 16 H 0.047 0.953 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.083 3.917 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.004 0.996 40 H -0.009 1.009 41 H 0.256 0.744 42 H 0.059 0.941 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 12.872 9.294 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.283 5.283 3 C -0.063 4.063 4 C -0.141 4.141 5 C -0.015 4.015 6 H 0.054 0.946 7 N -0.252 5.252 8 C -0.093 4.093 9 C -0.155 4.155 10 C -0.162 4.162 11 C -0.090 4.090 12 C -0.088 4.088 13 H 0.062 0.938 14 C 0.030 3.970 15 C -0.557 4.557 16 H 0.065 0.935 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.775 3.225 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.045 4.045 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.010 0.990 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.324 12.297 8.230 14.800 hybrid contribution -0.708 -0.687 1.067 1.453 sum -0.384 11.610 9.297 14.879 Atomic orbital electron populations 1.22300 0.86480 1.01944 1.00811 1.61691 1.08274 1.13880 1.44415 1.22039 0.94741 0.88768 1.00714 1.21591 0.94754 0.99348 0.98450 1.21769 0.87564 0.95756 0.96452 0.94590 1.64693 1.03968 1.15944 1.40635 1.23270 0.94864 0.89999 1.01181 1.22457 0.95480 0.98899 0.98659 1.22378 0.95707 0.98212 0.99891 1.22757 0.95782 0.98813 0.91621 1.21159 0.93797 0.94541 0.99290 0.93774 1.18604 0.94245 0.92220 0.91966 1.21692 1.35552 0.97716 1.00693 0.93463 1.25774 0.95994 1.02348 0.95468 1.70129 1.43972 1.36755 1.06458 0.85705 0.78064 0.80684 0.78082 1.20266 1.21221 1.19177 1.21852 0.95185 0.97422 0.90084 0.94804 0.90555 0.92514 0.94211 0.89777 0.90061 0.93082 0.90474 0.93023 0.88687 0.91820 0.89780 0.91168 0.94075 0.93241 0.97780 0.99024 0.93536 0.92256 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.59 127.69 1.22 2.18 16 2 N -0.56 -20.44 4.10 -922.61 -3.78 -24.22 16 3 C 0.07 1.99 5.46 86.33 0.47 2.46 16 4 C -0.10 -3.45 4.78 30.65 0.15 -3.30 16 5 C 0.09 3.29 1.40 44.99 0.06 3.36 16 6 H 0.04 1.17 7.98 -2.39 -0.02 1.15 16 7 N -0.53 -18.59 4.15 -857.37 -3.56 -22.14 16 8 C 0.03 0.91 5.37 86.65 0.47 1.38 16 9 C -0.12 -2.69 7.06 31.80 0.22 -2.47 16 10 C -0.12 -3.02 6.93 31.48 0.22 -2.80 16 11 C 0.04 1.24 5.57 86.45 0.48 1.72 16 12 C -0.07 -2.93 1.95 -10.74 -0.02 -2.95 16 13 H 0.04 1.94 7.40 -2.39 -0.02 1.92 16 14 C 0.07 3.63 3.82 29.85 0.11 3.74 16 15 C -0.52 -30.39 8.41 25.60 0.22 -30.18 16 16 H 0.05 2.69 7.13 -2.91 -0.02 2.67 16 17 C 0.00 0.04 5.46 84.65 0.46 0.50 16 18 N -0.93 -59.33 13.29 21.45 0.28 -59.04 16 19 Si 0.95 46.48 29.54 68.60 2.03 48.50 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.08 3.21 4.73 86.33 0.41 3.61 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 1.99 8.09 -2.38 -0.02 1.97 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 2.28 8.09 -2.38 -0.02 2.26 16 29 H 0.08 2.21 7.05 -2.39 -0.02 2.20 16 30 H 0.05 2.13 6.72 -2.38 -0.02 2.11 16 31 H 0.08 2.07 7.72 -2.39 -0.02 2.05 16 32 H 0.05 1.21 8.01 -2.39 -0.02 1.19 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.26 7.65 -2.39 -0.02 1.24 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.00 0.23 6.16 -2.39 -0.01 0.22 16 40 H -0.01 -0.52 7.36 -2.39 -0.02 -0.54 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.06 2.54 6.98 -2.39 -0.02 2.52 16 43 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.83 320.84 0.39 -68.44 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.94 Total: 11.19 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.47 Total: -22.73 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -7.05 Total: -105.41 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -68.83 0.39 -68.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.890 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds