Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99958 * 2 1 4 4 C 1.53032 * 109.52348 * 174.16258 * 3 2 1 5 5 C 1.53123 * 109.27911 * 59.17573 * 4 3 2 6 6 H 1.09007 * 109.52076 * 62.25123 * 5 4 3 7 7 N 1.46895 * 109.52556 * 182.44118 * 5 4 3 8 8 C 1.48531 * 111.00611 * 177.28720 * 7 5 4 9 9 C 1.54928 * 103.23186 * 159.72038 * 8 7 5 10 10 C 1.54599 * 102.92374 * 322.58836 * 9 8 7 11 11 C 1.47905 * 110.99909 * 294.68493 * 7 5 4 12 12 C 1.53123 * 109.16001 * 302.34817 * 5 4 3 13 13 H 1.09006 * 109.50264 * 177.59249 * 12 5 4 14 14 C 1.53000 * 109.50348 * 297.70943 * 12 5 4 15 15 C 1.50692 * 109.47300 * 184.80472 * 14 12 5 16 16 H 1.08002 * 119.99957 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00250 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99972 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47230 * 89.99618 * 19 17 15 21 21 H 1.48499 * 109.47143 * 209.99968 * 19 17 15 22 22 H 1.48498 * 109.46884 * 329.99371 * 19 17 15 23 23 C 1.46842 * 110.99676 * 235.78938 * 2 1 3 24 24 H 1.08999 * 109.47230 * 184.21551 * 1 2 3 25 25 H 1.09004 * 109.46916 * 304.21176 * 1 2 3 26 26 H 1.08994 * 109.47211 * 64.20929 * 1 2 3 27 27 H 1.09003 * 109.46014 * 294.17985 * 3 2 1 28 28 H 1.08995 * 109.46374 * 54.14015 * 3 2 1 29 29 H 1.08996 * 109.50421 * 179.11872 * 4 3 2 30 30 H 1.08998 * 109.50355 * 299.19707 * 4 3 2 31 31 H 1.09000 * 110.66659 * 278.15971 * 8 7 5 32 32 H 1.09005 * 110.66510 * 41.28653 * 8 7 5 33 33 H 1.09006 * 110.72796 * 204.23114 * 9 8 7 34 34 H 1.09001 * 110.87692 * 81.01884 * 9 8 7 35 35 H 1.09003 * 110.30766 * 263.04190 * 10 9 8 36 36 H 1.08991 * 110.31160 * 140.87266 * 10 9 8 37 37 H 1.08995 * 109.92088 * 333.50512 * 11 7 5 38 38 H 1.09005 * 109.91801 * 94.80549 * 11 7 5 39 39 H 1.09001 * 109.47403 * 304.80719 * 14 12 5 40 40 H 1.09004 * 109.47029 * 64.80202 * 14 12 5 41 41 H 0.96992 * 119.99791 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.46766 * 65.82407 * 23 2 1 43 43 H 1.09000 * 109.46420 * 305.85141 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 1 3.8887 1.0354 -1.9561 7 7 5.5756 0.4485 -0.8476 8 6 6.1857 -0.3746 -1.9229 9 6 7.6707 0.0669 -1.9082 10 6 7.5777 1.5833 -1.6216 11 6 6.2035 1.7833 -0.9561 12 6 3.5181 -0.8715 -1.0208 13 1 3.9098 -1.4304 -1.8708 14 6 3.8876 -1.5904 0.2782 15 6 3.3975 -3.0142 0.2214 16 1 2.8750 -3.3709 -0.6539 17 6 3.6160 -3.8616 1.2868 18 7 4.2526 -3.4274 2.3526 19 14 3.0090 -5.6269 1.2161 20 1 4.0663 -6.4909 0.6323 21 1 2.6884 -6.0955 2.5882 22 1 1.7896 -5.6974 0.3715 23 6 1.9952 -0.7708 -1.1337 24 1 -0.3633 -1.0249 0.0755 25 1 -0.3633 0.5778 0.8499 26 1 -0.3633 0.4471 -0.9252 27 1 1.7324 1.8608 -0.9376 28 1 1.5634 1.9257 0.8329 29 1 3.9099 2.3512 0.1309 30 1 3.7814 0.8574 1.0909 31 1 6.0976 -1.4361 -1.6917 32 1 5.7272 -0.1502 -2.8861 33 1 8.1368 -0.1147 -2.8766 34 1 8.2195 -0.4424 -1.1160 35 1 7.6332 2.1482 -2.5522 36 1 8.3744 1.8898 -0.9440 37 1 5.5844 2.4360 -1.5716 38 1 6.3310 2.2155 0.0364 39 1 4.9706 -1.5836 0.4019 40 1 3.4225 -1.0793 1.1213 41 1 4.4067 -4.0237 3.1019 42 1 1.7325 -0.2709 -2.0660 43 1 1.5634 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = 4.194811 kcal Electronic energy + Delta-G solvation = -20226.869614 eV Core-core repulsion = 17499.437211 eV Total energy + Delta-G solvation = -2727.432403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.54168 -37.48080 -33.82115 -32.62656 -30.87980 -29.65784 -28.45197 -26.72574 -25.41793 -23.18539 -22.31460 -21.64471 -20.49728 -20.11171 -17.81496 -16.30712 -15.85176 -15.52641 -14.78889 -14.47591 -14.17414 -14.08731 -13.70555 -13.36385 -13.02720 -12.58654 -12.19406 -11.98918 -11.92135 -11.71340 -11.68211 -11.20234 -11.07611 -10.89815 -10.74638 -10.65547 -10.58490 -10.41315 -10.33799 -10.21550 -9.75095 -9.39022 -9.01885 -8.67460 -8.09044 -7.81437 -7.60646 -5.75878 -3.74416 3.42443 3.49013 3.51174 4.37903 4.52188 4.63096 4.93953 4.97097 5.16003 5.34315 5.51271 5.55745 5.59417 5.60103 5.68570 5.77987 5.79437 5.83829 5.93354 5.97535 6.04086 6.05964 6.06626 6.13645 6.20788 6.27027 6.30499 6.39941 6.46603 6.50918 6.66865 6.83665 6.88618 7.33416 7.40685 7.66445 7.70302 7.75832 8.00812 8.31632 8.40197 8.70580 9.33764 9.85452 11.35263 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.008556 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.193079 B = 3271.656040 C = 4491.772303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.524 5.524 3 C 0.063 3.937 4 C -0.107 4.107 5 C 0.086 3.914 6 H 0.019 0.981 7 N -0.496 5.496 8 C 0.038 3.962 9 C -0.124 4.124 10 C -0.130 4.130 11 C 0.035 3.965 12 C -0.075 4.075 13 H 0.056 0.944 14 C 0.044 3.956 15 C -0.506 4.506 16 H 0.046 0.954 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.880 3.120 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.076 3.924 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.012 0.988 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.034 0.966 41 H 0.255 0.745 42 H 0.005 0.995 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 10.972 -7.982 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.248 5.248 3 C -0.066 4.066 4 C -0.145 4.145 5 C -0.023 4.023 6 H 0.037 0.963 7 N -0.219 5.219 8 C -0.089 4.089 9 C -0.162 4.162 10 C -0.168 4.168 11 C -0.093 4.093 12 C -0.094 4.094 13 H 0.074 0.926 14 C 0.007 3.993 15 C -0.544 4.544 16 H 0.064 0.936 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.709 3.291 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.052 4.052 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.023 0.977 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.876 10.464 -6.862 12.544 hybrid contribution -0.883 -0.257 -1.574 1.823 sum -0.007 10.207 -8.435 13.242 Atomic orbital electron populations 1.22295 0.88353 1.02102 0.99058 1.61766 1.06282 1.12288 1.44434 1.22006 0.95787 0.89812 0.98984 1.21610 0.93474 0.98474 1.00969 1.21911 0.87142 0.97849 0.95391 0.96305 1.64771 1.03988 1.08923 1.44263 1.23197 0.93101 1.00164 0.92489 1.22476 0.97009 0.95292 1.01386 1.22387 0.97491 0.96947 0.99966 1.22854 0.94304 0.92048 1.00086 1.21370 0.92258 0.92993 1.02795 0.92600 1.18987 0.97089 0.92938 0.90269 1.21269 1.35479 0.96678 1.01014 0.93596 1.24914 0.95786 0.97696 0.95790 1.69975 1.42251 1.35145 1.05907 0.86801 0.78971 0.86388 0.76968 1.21105 1.21526 1.20270 1.22058 0.96680 0.98020 0.88460 0.91322 0.92074 0.96947 0.96426 0.91344 0.93003 0.88999 0.88940 0.94777 0.91744 0.90619 0.92252 0.91402 0.94715 0.90737 0.95497 0.94766 0.93495 0.97686 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.59 60.07 0.58 1.05 16 2 N -0.52 -9.82 4.11 -242.96 -1.00 -10.82 16 3 C 0.06 1.03 5.46 -3.84 -0.02 1.01 16 4 C -0.11 -1.85 4.97 -26.65 -0.13 -1.99 16 5 C 0.09 1.54 1.41 -67.59 -0.10 1.44 16 6 H 0.02 0.33 7.96 -51.93 -0.41 -0.08 16 7 N -0.50 -8.71 4.17 -222.35 -0.93 -9.64 16 8 C 0.04 0.62 5.29 -1.90 -0.01 0.61 16 9 C -0.12 -1.67 7.06 -24.87 -0.18 -1.85 16 10 C -0.13 -1.60 6.93 -25.37 -0.18 -1.78 16 11 C 0.04 0.51 5.61 -2.75 -0.02 0.49 16 12 C -0.08 -1.56 1.76 -90.54 -0.16 -1.72 16 13 H 0.06 1.17 7.03 -51.93 -0.37 0.81 16 14 C 0.04 1.13 3.83 -27.89 -0.11 1.03 16 15 C -0.51 -14.25 8.40 -34.44 -0.29 -14.54 16 16 H 0.05 1.26 7.06 -52.49 -0.37 0.89 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 19 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.08 1.48 4.72 -3.84 -0.02 1.46 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.05 0.78 7.45 -51.93 -0.39 0.39 16 30 H 0.09 1.88 6.70 -51.93 -0.35 1.53 16 31 H 0.09 1.72 7.65 -51.93 -0.40 1.32 16 32 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.47 7.65 -51.93 -0.40 0.08 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.76 7.30 -51.93 -0.38 0.38 16 40 H 0.03 0.97 6.13 -51.93 -0.32 0.65 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.01 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.08 1.78 6.91 -51.93 -0.36 1.42 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -30.50 320.53 -10.03 -40.53 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.93 Total: -2.21 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.72 Total: -13.17 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.19 Total: -47.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.50 -10.03 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.722 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds