Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99958 * 2 1 4 4 C 1.53032 * 109.52348 * 174.16258 * 3 2 1 5 5 C 1.53123 * 109.27911 * 59.17573 * 4 3 2 6 6 H 1.09007 * 109.52076 * 62.25123 * 5 4 3 7 7 N 1.46895 * 109.52556 * 182.44118 * 5 4 3 8 8 C 1.48531 * 111.00611 * 177.28720 * 7 5 4 9 9 C 1.54928 * 103.23186 * 159.72038 * 8 7 5 10 10 C 1.54599 * 102.92374 * 322.58836 * 9 8 7 11 11 C 1.47905 * 110.99909 * 294.68493 * 7 5 4 12 12 C 1.53123 * 109.16001 * 302.34817 * 5 4 3 13 13 H 1.09006 * 109.50264 * 177.59249 * 12 5 4 14 14 C 1.53000 * 109.50348 * 297.70943 * 12 5 4 15 15 C 1.50692 * 109.47300 * 184.80472 * 14 12 5 16 16 H 1.08002 * 119.99957 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00250 * 180.02562 * 15 14 12 18 18 N 1.31516 * 119.99972 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47230 * 89.99618 * 19 17 15 21 21 H 1.48499 * 109.47143 * 209.99968 * 19 17 15 22 22 H 1.48498 * 109.46884 * 329.99371 * 19 17 15 23 23 C 1.46842 * 110.99676 * 235.78938 * 2 1 3 24 24 H 1.08999 * 109.47230 * 184.21551 * 1 2 3 25 25 H 1.09004 * 109.46916 * 304.21176 * 1 2 3 26 26 H 1.08994 * 109.47211 * 64.20929 * 1 2 3 27 27 H 1.09003 * 109.46014 * 294.17985 * 3 2 1 28 28 H 1.08995 * 109.46374 * 54.14015 * 3 2 1 29 29 H 1.08996 * 109.50421 * 179.11872 * 4 3 2 30 30 H 1.08998 * 109.50355 * 299.19707 * 4 3 2 31 31 H 1.09000 * 110.66659 * 278.15971 * 8 7 5 32 32 H 1.09005 * 110.66510 * 41.28653 * 8 7 5 33 33 H 1.09006 * 110.72796 * 204.23114 * 9 8 7 34 34 H 1.09001 * 110.87692 * 81.01884 * 9 8 7 35 35 H 1.09003 * 110.30766 * 263.04190 * 10 9 8 36 36 H 1.08991 * 110.31160 * 140.87266 * 10 9 8 37 37 H 1.08995 * 109.92088 * 333.50512 * 11 7 5 38 38 H 1.09005 * 109.91801 * 94.80549 * 11 7 5 39 39 H 1.09001 * 109.47403 * 304.80719 * 14 12 5 40 40 H 1.09004 * 109.47029 * 64.80202 * 14 12 5 41 41 H 0.96992 * 119.99791 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.46766 * 65.82407 * 23 2 1 43 43 H 1.09000 * 109.46420 * 305.85141 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 1 3.8887 1.0354 -1.9561 7 7 5.5756 0.4485 -0.8476 8 6 6.1857 -0.3746 -1.9229 9 6 7.6707 0.0669 -1.9082 10 6 7.5777 1.5833 -1.6216 11 6 6.2035 1.7833 -0.9561 12 6 3.5181 -0.8715 -1.0208 13 1 3.9098 -1.4304 -1.8708 14 6 3.8876 -1.5904 0.2782 15 6 3.3975 -3.0142 0.2214 16 1 2.8750 -3.3709 -0.6539 17 6 3.6160 -3.8616 1.2868 18 7 4.2526 -3.4274 2.3526 19 14 3.0090 -5.6269 1.2161 20 1 4.0663 -6.4909 0.6323 21 1 2.6884 -6.0955 2.5882 22 1 1.7896 -5.6974 0.3715 23 6 1.9952 -0.7708 -1.1337 24 1 -0.3633 -1.0249 0.0755 25 1 -0.3633 0.5778 0.8499 26 1 -0.3633 0.4471 -0.9252 27 1 1.7324 1.8608 -0.9376 28 1 1.5634 1.9257 0.8329 29 1 3.9099 2.3512 0.1309 30 1 3.7814 0.8574 1.0909 31 1 6.0976 -1.4361 -1.6917 32 1 5.7272 -0.1502 -2.8861 33 1 8.1368 -0.1147 -2.8766 34 1 8.2195 -0.4424 -1.1160 35 1 7.6332 2.1482 -2.5522 36 1 8.3744 1.8898 -0.9440 37 1 5.5844 2.4360 -1.5716 38 1 6.3310 2.2155 0.0364 39 1 4.9706 -1.5836 0.4019 40 1 3.4225 -1.0793 1.1213 41 1 4.4067 -4.0237 3.1019 42 1 1.7325 -0.2709 -2.0660 43 1 1.5634 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259363752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = -15.382751 kcal Electronic energy + Delta-G solvation = -20227.718561 eV Core-core repulsion = 17499.437211 eV Total energy + Delta-G solvation = -2728.281350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94530 -38.77304 -35.50100 -34.42090 -32.59729 -30.92636 -29.64017 -28.66728 -26.76019 -25.04113 -23.69443 -23.22855 -21.79917 -21.25897 -19.42337 -18.32712 -17.28429 -16.80019 -16.46332 -16.16323 -15.64588 -15.51192 -15.05591 -14.78514 -14.32430 -14.01503 -13.87626 -13.71359 -13.25135 -13.10813 -13.01698 -12.82466 -12.65662 -12.48426 -12.29032 -12.17812 -12.07867 -11.91207 -11.80549 -11.44151 -11.38294 -11.16146 -10.89241 -10.63803 -10.33126 -9.12309 -8.97806 -8.01703 -6.07425 1.40741 1.41715 1.51589 2.49260 3.11068 3.18433 3.31552 3.76132 3.82678 4.02425 4.07528 4.14109 4.28349 4.35660 4.39581 4.42835 4.49132 4.66609 4.67993 4.69157 4.73436 4.77638 4.87468 4.95725 5.00648 5.02026 5.05344 5.08333 5.13269 5.22497 5.27040 5.38058 5.39027 5.55734 5.73256 6.11169 6.16171 6.20831 6.34520 6.36261 6.40413 6.49490 7.12540 7.56950 9.09731 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.008556 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.193079 B = 3271.656040 C = 4491.772303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.558 5.558 3 C 0.066 3.934 4 C -0.102 4.102 5 C 0.093 3.907 6 H 0.037 0.963 7 N -0.527 5.527 8 C 0.038 3.962 9 C -0.119 4.119 10 C -0.121 4.121 11 C 0.034 3.966 12 C -0.070 4.070 13 H 0.047 0.953 14 C 0.067 3.933 15 C -0.517 4.517 16 H 0.048 0.952 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.083 3.917 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.071 0.929 39 H -0.009 1.009 40 H 0.003 0.997 41 H 0.256 0.744 42 H 0.030 0.970 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 12.327 -9.629 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.282 5.282 3 C -0.062 4.062 4 C -0.140 4.140 5 C -0.016 4.016 6 H 0.054 0.946 7 N -0.252 5.252 8 C -0.090 4.090 9 C -0.157 4.157 10 C -0.159 4.159 11 C -0.094 4.094 12 C -0.089 4.089 13 H 0.066 0.934 14 C 0.030 3.970 15 C -0.555 4.555 16 H 0.066 0.934 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.774 3.226 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.045 4.045 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.010 0.990 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.355 11.827 -8.524 14.583 hybrid contribution -0.709 -0.669 -1.037 1.423 sum -0.354 11.158 -9.561 14.698 Atomic orbital electron populations 1.22299 0.86496 1.01939 1.00795 1.61694 1.08262 1.13847 1.44436 1.22036 0.94747 0.88785 1.00677 1.21549 0.94654 0.99279 0.98501 1.21777 0.87581 0.95827 0.96387 0.94557 1.64691 1.03959 1.11165 1.45356 1.23120 0.95286 0.98069 0.92541 1.22454 0.94829 0.96217 1.02243 1.22376 0.96486 0.95913 1.01163 1.22910 0.95469 0.90410 1.00562 1.21196 0.93881 0.94474 0.99385 0.93448 1.18610 0.94193 0.92278 0.91955 1.21684 1.34900 0.98043 1.00921 0.93379 1.25769 0.96059 1.02264 0.95469 1.70129 1.43727 1.36776 1.06698 0.85709 0.78807 0.80949 0.77091 1.20323 1.21281 1.19129 1.21857 0.95195 0.97431 0.90063 0.92506 0.90583 0.94812 0.94224 0.89847 0.90329 0.93148 0.92681 0.93627 0.89288 0.92165 0.89816 0.90341 0.93279 0.91046 0.99047 0.97825 0.93551 0.95237 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.59 127.69 1.22 2.19 16 2 N -0.56 -20.48 4.11 -922.60 -3.79 -24.27 16 3 C 0.07 2.01 5.46 86.32 0.47 2.48 16 4 C -0.10 -3.43 4.97 30.65 0.15 -3.28 16 5 C 0.09 3.28 1.41 45.00 0.06 3.34 16 6 H 0.04 1.17 7.96 -2.38 -0.02 1.16 16 7 N -0.53 -18.53 4.17 -857.38 -3.57 -22.10 16 8 C 0.04 1.23 5.29 86.65 0.46 1.69 16 9 C -0.12 -3.09 7.06 31.80 0.22 -2.86 16 10 C -0.12 -2.68 6.93 31.48 0.22 -2.46 16 11 C 0.03 0.92 5.61 86.45 0.49 1.40 16 12 C -0.07 -2.97 1.76 -10.74 -0.02 -2.99 16 13 H 0.05 2.04 7.03 -2.38 -0.02 2.03 16 14 C 0.07 3.60 3.83 29.85 0.11 3.71 16 15 C -0.52 -30.11 8.40 25.60 0.21 -29.89 16 16 H 0.05 2.71 7.06 -2.91 -0.02 2.69 16 17 C 0.00 0.05 5.46 84.65 0.46 0.52 16 18 N -0.93 -59.17 13.29 21.45 0.28 -58.89 16 19 Si 0.95 46.30 29.54 68.60 2.03 48.33 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.08 3.19 4.72 86.33 0.41 3.60 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 29 H 0.08 2.19 7.45 -2.39 -0.02 2.18 16 30 H 0.05 2.12 6.70 -2.39 -0.02 2.11 16 31 H 0.05 2.17 7.65 -2.39 -0.02 2.15 16 32 H 0.05 1.36 8.02 -2.38 -0.02 1.34 16 33 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.18 7.65 -2.39 -0.02 1.16 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 39 H -0.01 -0.53 7.30 -2.39 -0.02 -0.55 16 40 H 0.00 0.20 6.13 -2.39 -0.01 0.19 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 2.55 6.91 -2.39 -0.02 2.53 16 Total: -1.00 -68.21 320.53 0.37 -67.84 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.94 Total: 11.64 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.48 Total: -22.55 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -7.08 Total: -105.26 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -68.21 0.37 -67.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.460 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds