Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46851 * 110.99444 * 2 1 4 4 C 1.53039 * 109.51885 * 185.83835 * 3 2 1 5 5 C 1.53118 * 109.27862 * 300.82284 * 4 3 2 6 6 H 1.08995 * 109.52303 * 297.68175 * 5 4 3 7 7 N 1.46900 * 109.52045 * 177.56065 * 5 4 3 8 8 C 1.48535 * 111.00018 * 304.71044 * 7 5 4 9 9 C 1.54940 * 103.22831 * 159.72278 * 8 7 5 10 10 C 1.54597 * 102.92026 * 322.58675 * 9 8 7 11 11 C 1.47905 * 111.00525 * 62.10838 * 7 5 4 12 12 C 1.53117 * 109.21440 * 57.62279 * 5 4 3 13 13 H 1.09005 * 109.49974 * 62.31955 * 12 5 4 14 14 C 1.53001 * 109.50389 * 182.43624 * 12 5 4 15 15 C 1.50698 * 109.47354 * 185.00171 * 14 12 5 16 16 H 1.08006 * 119.99740 * 359.97438 * 15 14 12 17 17 C 1.37871 * 120.00222 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00189 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46879 * 59.99573 * 19 17 15 21 21 H 1.48487 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46886 * 299.99978 * 19 17 15 23 23 C 1.46839 * 111.00028 * 124.20606 * 2 1 3 24 24 H 1.08998 * 109.47051 * 56.04449 * 1 2 3 25 25 H 1.09002 * 109.46722 * 176.05009 * 1 2 3 26 26 H 1.09006 * 109.47079 * 296.04378 * 1 2 3 27 27 H 1.08998 * 109.46635 * 65.82739 * 3 2 1 28 28 H 1.08994 * 109.45620 * 305.84657 * 3 2 1 29 29 H 1.09004 * 109.50584 * 180.88011 * 4 3 2 30 30 H 1.08997 * 109.50385 * 60.76058 * 4 3 2 31 31 H 1.08996 * 110.66944 * 278.15561 * 8 7 5 32 32 H 1.08994 * 110.66685 * 41.29204 * 8 7 5 33 33 H 1.08996 * 110.72883 * 204.23006 * 9 8 7 34 34 H 1.09002 * 110.72536 * 80.93978 * 9 8 7 35 35 H 1.09002 * 110.30846 * 263.03798 * 10 9 8 36 36 H 1.09001 * 110.31028 * 140.87421 * 10 9 8 37 37 H 1.09001 * 109.91227 * 333.51157 * 11 7 5 38 38 H 1.08996 * 109.91461 * 94.60298 * 11 7 5 39 39 H 1.09004 * 109.47247 * 304.99955 * 14 12 5 40 40 H 1.08996 * 109.47053 * 64.99736 * 14 12 5 41 41 H 0.97000 * 120.00189 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47134 * 294.18030 * 23 2 1 43 43 H 1.09004 * 109.45863 * 54.16215 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 1 3.8897 1.0361 1.9559 7 7 5.5756 0.4488 0.8474 8 6 5.9257 -0.1272 -0.4761 9 6 7.3895 0.3346 -0.6878 10 6 7.3924 1.7597 -0.0885 11 6 6.1952 1.7914 0.8795 12 6 3.5183 -0.8714 1.0224 13 1 3.7816 -1.3845 0.0974 14 6 4.0684 -1.6544 2.2163 15 6 3.5740 -3.0767 2.1552 16 1 2.9312 -3.3906 1.3459 17 6 3.9412 -3.9768 3.1328 18 7 4.7234 -3.5944 4.1184 19 14 3.3277 -5.7396 3.0574 20 1 3.7908 -6.3714 1.7957 21 1 3.8617 -6.4995 4.2160 22 1 1.8433 -5.7494 3.1001 23 6 1.9953 -0.7707 1.1337 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 -0.3633 0.4512 0.9234 27 1 1.7325 1.8609 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9099 2.3514 -0.1310 30 1 3.7813 0.8569 -1.0905 31 1 5.8656 -1.2152 -0.4503 32 1 5.2787 0.2765 -1.2548 33 1 7.6357 0.3620 -1.7492 34 1 8.0802 -0.3125 -0.1471 35 1 7.2618 2.5016 -0.8763 36 1 8.3212 1.9407 0.4525 37 1 5.4740 2.5410 0.5537 38 1 6.5363 2.0188 1.8894 39 1 5.1580 -1.6469 2.1848 40 1 3.7285 -1.1910 3.1424 41 1 4.9821 -4.2278 4.8060 42 1 1.7325 -0.2708 2.0660 43 1 1.5636 -1.7715 1.1240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = 3.478616 kcal Electronic energy + Delta-G solvation = -20065.557531 eV Core-core repulsion = 17338.094071 eV Total energy + Delta-G solvation = -2727.463460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75570 -37.40897 -34.03282 -32.78403 -31.07548 -29.58658 -28.56740 -26.74128 -25.46333 -23.52420 -22.64907 -21.02433 -20.63616 -20.07996 -18.39138 -16.29939 -15.89829 -15.57878 -14.86395 -14.73868 -14.35765 -14.18700 -13.61524 -13.47104 -13.22360 -12.51552 -12.36310 -11.98107 -11.97090 -11.68424 -11.65196 -11.27940 -11.08570 -11.06369 -10.85736 -10.76821 -10.73807 -10.63756 -10.28633 -10.16656 -9.84945 -9.61335 -9.10177 -8.79245 -8.22225 -7.94545 -7.71531 -5.86929 -3.87989 3.39305 3.43938 3.46294 4.31146 4.44289 4.55084 4.92024 4.98224 5.13532 5.20359 5.29067 5.38989 5.48475 5.53330 5.61533 5.70373 5.71243 5.74500 5.84051 5.92793 5.97947 6.04730 6.05425 6.09623 6.14457 6.23850 6.28268 6.30254 6.40455 6.48259 6.55813 6.79466 6.95073 7.20662 7.37430 7.51309 7.54895 7.63202 7.87574 8.07123 8.22377 8.57357 9.19859 9.74396 11.23935 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.008032 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.694982 B = 3485.186301 C = 4806.304737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.548 5.548 3 C 0.064 3.936 4 C -0.153 4.153 5 C 0.081 3.919 6 H 0.072 0.928 7 N -0.495 5.495 8 C 0.030 3.970 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.029 3.971 12 C -0.063 4.063 13 H 0.065 0.935 14 C 0.036 3.964 15 C -0.516 4.516 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.069 3.931 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.020 0.980 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.008 0.992 41 H 0.258 0.742 42 H 0.026 0.974 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 11.572 -9.279 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.065 4.065 4 C -0.192 4.192 5 C -0.028 4.028 6 H 0.090 0.910 7 N -0.217 5.217 8 C -0.097 4.097 9 C -0.162 4.162 10 C -0.166 4.166 11 C -0.099 4.099 12 C -0.082 4.082 13 H 0.083 0.917 14 C -0.001 4.001 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.058 4.058 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.403 10.951 -9.094 14.241 hybrid contribution -1.017 -0.044 0.207 1.039 sum -1.420 10.907 -8.887 14.141 Atomic orbital electron populations 1.22298 0.88238 1.01996 0.99559 1.62025 1.06809 1.12933 1.45440 1.21925 0.95215 0.89878 0.99455 1.22342 0.95216 1.00112 1.01517 1.22001 0.86545 0.97760 0.96477 0.91008 1.64962 1.09555 1.17368 1.29804 1.23320 0.94561 1.01333 0.90497 1.22480 0.97604 0.96147 0.99980 1.22357 0.98608 0.97346 0.98320 1.22912 0.95585 0.91660 0.99791 1.21251 0.91922 0.92799 1.02273 0.91681 1.19029 0.97512 0.92973 0.90623 1.21269 1.29745 0.95603 1.08779 0.92941 1.24979 0.95361 0.98261 0.95694 1.69968 1.35753 1.34816 1.12777 0.86778 0.79020 0.85524 0.77349 1.20374 1.21472 1.20470 1.22203 0.96549 0.97918 0.89141 0.92233 0.91414 0.96161 0.95492 0.91777 0.92217 0.90704 0.89485 0.93450 0.91738 0.90792 0.92205 0.91484 0.93947 0.90883 0.94449 0.97370 0.93204 0.95612 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.59 60.07 0.58 0.96 16 2 N -0.55 -9.00 4.91 -242.95 -1.19 -10.19 16 3 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 4 C -0.15 -2.26 4.72 -26.65 -0.13 -2.39 16 5 C 0.08 1.44 1.74 -67.59 -0.12 1.32 16 6 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 7 N -0.49 -8.59 4.56 -222.36 -1.01 -9.60 16 8 C 0.03 0.48 5.40 -1.90 -0.01 0.47 16 9 C -0.12 -1.64 7.06 -24.87 -0.18 -1.81 16 10 C -0.13 -1.56 6.93 -25.38 -0.18 -1.73 16 11 C 0.03 0.41 6.47 -2.75 -0.02 0.39 16 12 C -0.06 -1.31 1.67 -90.54 -0.15 -1.46 16 13 H 0.06 1.42 6.95 -51.93 -0.36 1.06 16 14 C 0.04 0.93 4.38 -27.88 -0.12 0.81 16 15 C -0.52 -14.47 8.42 -34.44 -0.29 -14.76 16 16 H 0.05 1.44 7.07 -52.48 -0.37 1.07 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.07 1.35 4.54 -3.84 -0.02 1.33 16 24 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.06 0.79 6.18 -51.93 -0.32 0.47 16 30 H 0.07 1.14 5.86 -51.93 -0.30 0.84 16 31 H 0.09 1.56 7.63 -51.93 -0.40 1.16 16 32 H 0.05 0.71 5.45 -51.93 -0.28 0.43 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.56 5.67 -51.93 -0.29 0.27 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 1.05 7.54 -51.93 -0.39 0.66 16 40 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.80 6.97 -51.93 -0.36 1.44 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -29.82 318.87 -10.14 -39.96 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.71 Total: -1.04 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.75 Total: -14.39 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.47 Total: -46.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.82 -10.14 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.438 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds