Wall clock time and date at job start Mon Mar 30 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46851 * 110.99444 * 2 1 4 4 C 1.53039 * 109.51885 * 185.83835 * 3 2 1 5 5 C 1.53118 * 109.27862 * 300.82284 * 4 3 2 6 6 H 1.08995 * 109.52303 * 297.68175 * 5 4 3 7 7 N 1.46900 * 109.52045 * 177.56065 * 5 4 3 8 8 C 1.48535 * 111.00018 * 304.71044 * 7 5 4 9 9 C 1.54940 * 103.22831 * 159.72278 * 8 7 5 10 10 C 1.54597 * 102.92026 * 322.58675 * 9 8 7 11 11 C 1.47905 * 111.00525 * 62.10838 * 7 5 4 12 12 C 1.53117 * 109.21440 * 57.62279 * 5 4 3 13 13 H 1.09005 * 109.49974 * 62.31955 * 12 5 4 14 14 C 1.53001 * 109.50389 * 182.43624 * 12 5 4 15 15 C 1.50698 * 109.47354 * 185.00171 * 14 12 5 16 16 H 1.08006 * 119.99740 * 359.97438 * 15 14 12 17 17 C 1.37871 * 120.00222 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00103 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00189 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46879 * 59.99573 * 19 17 15 21 21 H 1.48487 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46886 * 299.99978 * 19 17 15 23 23 C 1.46839 * 111.00028 * 124.20606 * 2 1 3 24 24 H 1.08998 * 109.47051 * 56.04449 * 1 2 3 25 25 H 1.09002 * 109.46722 * 176.05009 * 1 2 3 26 26 H 1.09006 * 109.47079 * 296.04378 * 1 2 3 27 27 H 1.08998 * 109.46635 * 65.82739 * 3 2 1 28 28 H 1.08994 * 109.45620 * 305.84657 * 3 2 1 29 29 H 1.09004 * 109.50584 * 180.88011 * 4 3 2 30 30 H 1.08997 * 109.50385 * 60.76058 * 4 3 2 31 31 H 1.08996 * 110.66944 * 278.15561 * 8 7 5 32 32 H 1.08994 * 110.66685 * 41.29204 * 8 7 5 33 33 H 1.08996 * 110.72883 * 204.23006 * 9 8 7 34 34 H 1.09002 * 110.72536 * 80.93978 * 9 8 7 35 35 H 1.09002 * 110.30846 * 263.03798 * 10 9 8 36 36 H 1.09001 * 110.31028 * 140.87421 * 10 9 8 37 37 H 1.09001 * 109.91227 * 333.51157 * 11 7 5 38 38 H 1.08996 * 109.91461 * 94.60298 * 11 7 5 39 39 H 1.09004 * 109.47247 * 304.99955 * 14 12 5 40 40 H 1.08996 * 109.47053 * 64.99736 * 14 12 5 41 41 H 0.97000 * 120.00189 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.47134 * 294.18030 * 23 2 1 43 43 H 1.09004 * 109.45863 * 54.16215 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1188 0.5371 1.0144 6 1 3.8897 1.0361 1.9559 7 7 5.5756 0.4488 0.8474 8 6 5.9257 -0.1272 -0.4761 9 6 7.3895 0.3346 -0.6878 10 6 7.3924 1.7597 -0.0885 11 6 6.1952 1.7914 0.8795 12 6 3.5183 -0.8714 1.0224 13 1 3.7816 -1.3845 0.0974 14 6 4.0684 -1.6544 2.2163 15 6 3.5740 -3.0767 2.1552 16 1 2.9312 -3.3906 1.3459 17 6 3.9412 -3.9768 3.1328 18 7 4.7234 -3.5944 4.1184 19 14 3.3277 -5.7396 3.0574 20 1 3.7908 -6.3714 1.7957 21 1 3.8617 -6.4995 4.2160 22 1 1.8433 -5.7494 3.1001 23 6 1.9953 -0.7707 1.1337 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 -0.3633 0.4512 0.9234 27 1 1.7325 1.8609 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9099 2.3514 -0.1310 30 1 3.7813 0.8569 -1.0905 31 1 5.8656 -1.2152 -0.4503 32 1 5.2787 0.2765 -1.2548 33 1 7.6357 0.3620 -1.7492 34 1 8.0802 -0.3125 -0.1471 35 1 7.2618 2.5016 -0.8763 36 1 8.3212 1.9407 0.4525 37 1 5.4740 2.5410 0.5537 38 1 6.5363 2.0188 1.8894 39 1 5.1580 -1.6469 2.1848 40 1 3.7285 -1.1910 3.1424 41 1 4.9821 -4.2278 4.8060 42 1 1.7325 -0.2708 2.0660 43 1 1.5636 -1.7715 1.1240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259363755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:47 Heat of formation + Delta-G solvation = -16.410822 kcal Electronic energy + Delta-G solvation = -20066.420002 eV Core-core repulsion = 17338.094071 eV Total energy + Delta-G solvation = -2728.325931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10520 -38.67176 -35.77969 -34.43394 -32.82876 -30.78305 -29.72621 -28.64048 -26.77864 -25.26352 -24.04956 -22.27243 -22.15257 -21.38228 -19.87201 -18.36966 -17.31079 -16.79237 -16.54736 -16.06932 -15.95850 -15.48749 -14.88496 -14.80421 -14.68932 -13.94424 -13.86163 -13.60027 -13.47246 -13.21949 -13.01158 -12.79588 -12.61338 -12.50011 -12.34112 -12.18593 -12.06070 -11.99216 -11.88168 -11.63584 -11.41773 -11.17531 -11.02345 -10.73456 -10.47141 -9.25747 -9.00258 -8.11676 -6.21018 1.39543 1.42468 1.50020 2.44133 3.03003 3.17744 3.22247 3.75890 3.81982 3.95020 4.04401 4.12288 4.16349 4.27335 4.35872 4.48808 4.54492 4.56746 4.65018 4.68810 4.77184 4.81696 4.84118 4.96124 4.98742 5.00693 5.03392 5.06751 5.14384 5.19873 5.22529 5.35859 5.40072 5.42695 5.60495 5.89240 5.97531 6.13386 6.18561 6.25694 6.32436 6.36051 6.96439 7.46296 8.99556 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.008032 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.694982 B = 3485.186301 C = 4806.304737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.554 5.554 3 C 0.062 3.938 4 C -0.140 4.140 5 C 0.087 3.913 6 H 0.054 0.946 7 N -0.529 5.529 8 C 0.031 3.969 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.027 3.973 12 C -0.052 4.052 13 H 0.053 0.947 14 C 0.051 3.949 15 C -0.530 4.530 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.081 3.919 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.022 0.978 27 H 0.027 0.973 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.004 0.996 40 H -0.026 1.026 41 H 0.260 0.740 42 H 0.012 0.988 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 12.790 -11.390 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.179 4.179 5 C -0.022 4.022 6 H 0.072 0.928 7 N -0.252 5.252 8 C -0.096 4.096 9 C -0.158 4.158 10 C -0.157 4.157 11 C -0.101 4.101 12 C -0.071 4.071 13 H 0.071 0.929 14 C 0.013 3.987 15 C -0.568 4.568 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.047 4.047 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.023 0.977 40 H -0.008 1.008 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.128 12.184 -11.224 16.604 hybrid contribution -0.786 -0.411 0.893 1.258 sum -1.914 11.773 -10.331 15.780 Atomic orbital electron populations 1.22386 0.86323 1.02497 1.00943 1.61988 1.08599 1.14008 1.43254 1.22053 0.94960 0.88846 1.00760 1.22231 0.95406 1.00711 0.99585 1.21778 0.87359 0.95743 0.97300 0.92756 1.64845 1.09365 1.19829 1.31208 1.23265 0.96825 0.99332 0.90186 1.22465 0.95202 0.96557 1.01551 1.22344 0.97898 0.97038 0.98450 1.22971 0.96703 0.90229 1.00161 1.20980 0.93126 0.94203 0.98840 0.92899 1.18771 0.95408 0.93030 0.91466 1.21645 1.29572 0.96758 1.08806 0.92613 1.25895 0.95471 1.03067 0.95237 1.70119 1.37110 1.36472 1.13624 0.85643 0.78885 0.79729 0.77639 1.19411 1.21029 1.19280 1.21883 0.95410 0.97379 0.90067 0.89346 0.91734 0.95899 0.95495 0.88611 0.89694 0.90694 0.92919 0.92047 0.89091 0.92354 0.89522 0.90645 0.92311 0.91865 0.97724 1.00750 0.93134 0.96929 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.59 127.69 1.22 1.89 16 2 N -0.55 -17.42 4.91 -922.57 -4.53 -21.95 16 3 C 0.06 1.64 5.46 86.33 0.47 2.11 16 4 C -0.14 -3.84 4.72 30.65 0.14 -3.70 16 5 C 0.09 3.13 1.74 44.99 0.08 3.21 16 6 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 7 N -0.53 -18.65 4.56 -857.41 -3.91 -22.56 16 8 C 0.03 0.99 5.40 86.65 0.47 1.45 16 9 C -0.12 -2.99 7.06 31.80 0.22 -2.77 16 10 C -0.12 -2.59 6.93 31.47 0.22 -2.38 16 11 C 0.03 0.73 6.47 86.44 0.56 1.29 16 12 C -0.05 -2.25 1.67 -10.74 -0.02 -2.27 16 13 H 0.05 2.40 6.95 -2.38 -0.02 2.38 16 14 C 0.05 2.80 4.38 29.85 0.13 2.93 16 15 C -0.53 -30.92 8.42 25.60 0.22 -30.71 16 16 H 0.06 3.15 7.07 -2.91 -0.02 3.13 16 17 C 0.00 0.03 5.46 84.65 0.46 0.50 16 18 N -0.93 -58.78 13.29 21.44 0.28 -58.49 16 19 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C 0.08 3.22 4.54 86.33 0.39 3.61 16 24 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 2.00 8.09 -2.39 -0.02 1.98 16 29 H 0.08 1.94 6.18 -2.38 -0.01 1.92 16 30 H 0.07 2.09 5.86 -2.39 -0.01 2.08 16 31 H 0.05 1.98 7.63 -2.39 -0.02 1.96 16 32 H 0.06 1.74 5.45 -2.39 -0.01 1.73 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.39 5.67 -2.39 -0.01 1.38 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.00 0.27 7.54 -2.38 -0.02 0.25 16 40 H -0.03 -1.57 8.14 -2.39 -0.02 -1.59 16 41 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 2.75 6.97 -2.38 -0.02 2.74 16 Total: -1.00 -67.36 318.87 -0.60 -67.97 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.95 Total: 12.11 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.57 Total: -24.83 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -8.15 Total: -103.00 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -67.36 -0.60 -67.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds