Wall clock time and date at job start Mon Mar 30 2020 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 111.00217 * 2 1 4 4 C 1.53035 * 109.52865 * 185.83769 * 3 2 1 5 5 C 1.53119 * 109.27728 * 300.82018 * 4 3 2 6 6 C 1.52993 * 109.52432 * 177.55486 * 5 4 3 7 7 H 1.08996 * 109.52563 * 300.12926 * 6 5 4 8 8 C 1.53119 * 109.52432 * 179.97438 * 6 5 4 9 9 C 1.53043 * 109.27960 * 182.44508 * 8 6 5 10 10 N 1.46847 * 109.52410 * 59.17697 * 9 8 6 11 11 C 1.46847 * 111.19846 * 298.26001 * 10 9 8 12 12 H 1.09002 * 109.46448 * 301.72463 * 11 10 9 13 13 C 1.50701 * 109.46132 * 181.74716 * 11 10 9 14 14 H 1.08003 * 119.99842 * 239.98199 * 13 11 10 15 15 C 1.37882 * 119.99886 * 59.97863 * 13 11 10 16 16 N 1.31515 * 119.99812 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99589 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47447 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47485 * 120.00159 * 17 15 13 20 20 H 1.48510 * 109.46736 * 239.99879 * 17 15 13 21 21 C 1.53044 * 109.51335 * 61.73741 * 11 10 9 22 22 C 1.53127 * 109.15883 * 57.65245 * 5 4 3 23 23 C 1.46847 * 110.99923 * 124.20704 * 2 1 3 24 24 H 1.09003 * 109.46950 * 60.00067 * 1 2 3 25 25 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47594 * 299.99878 * 1 2 3 27 27 H 1.09004 * 109.46267 * 65.81586 * 3 2 1 28 28 H 1.09005 * 109.45055 * 305.85001 * 3 2 1 29 29 H 1.09000 * 109.50422 * 180.87948 * 4 3 2 30 30 H 1.08999 * 109.53347 * 60.77719 * 4 3 2 31 31 H 1.08996 * 109.52282 * 297.68584 * 5 4 3 32 32 H 1.09000 * 109.50319 * 62.50380 * 8 6 5 33 33 H 1.08998 * 109.50623 * 302.38155 * 8 6 5 34 34 H 1.09004 * 109.45911 * 299.16296 * 9 8 6 35 35 H 1.08994 * 109.45457 * 179.19516 * 9 8 6 36 36 H 1.00899 * 110.99639 * 62.35757 * 10 9 8 37 37 H 0.96999 * 119.99313 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.49858 * 60.76701 * 21 11 10 39 39 H 1.09000 * 109.49965 * 180.88251 * 21 11 10 40 40 H 1.09001 * 109.50237 * 62.28792 * 22 5 4 41 41 H 1.09005 * 109.49985 * 182.40234 * 22 5 4 42 42 H 1.08992 * 109.46454 * 294.18019 * 23 2 1 43 43 H 1.09000 * 109.46289 * 54.15025 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5371 1.0145 6 6 5.6360 0.4450 0.8406 7 1 5.8652 -0.0541 -0.1009 8 6 6.2367 -0.3516 2.0021 9 6 7.7596 -0.3883 1.8555 10 7 8.2858 0.9827 1.8548 11 6 7.7595 1.7528 0.7207 12 1 8.0223 1.2525 -0.2114 13 6 8.3563 3.1366 0.7334 14 1 7.7138 4.0010 0.8143 15 6 9.7224 3.2991 0.6417 16 7 10.5047 2.2464 0.5437 17 14 10.4621 5.0143 0.6581 18 1 9.3764 6.0205 0.7764 19 1 11.3859 5.1440 1.8135 20 1 11.2121 5.2419 -0.6033 21 6 6.2365 1.8532 0.8337 22 6 3.5180 -0.8714 1.0209 23 6 1.9952 -0.7707 1.1338 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7323 1.8609 0.9375 28 1 1.5633 1.9255 -0.8331 29 1 3.9098 2.3513 -0.1310 30 1 3.7819 0.8572 -1.0906 31 1 3.8895 1.0361 1.9560 32 1 5.8450 -1.3687 1.9869 33 1 5.9735 0.1262 2.9458 34 1 8.0225 -0.8787 0.9181 35 1 8.1913 -0.9427 2.6887 36 1 8.0887 1.4460 2.7292 37 1 11.4657 2.3607 0.4796 38 1 5.9734 2.3658 1.7590 39 1 5.8446 2.4116 -0.0165 40 1 3.7813 -1.3836 0.0954 41 1 3.9099 -1.4302 1.8709 42 1 1.7323 -0.2708 2.0660 43 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259621387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:46 Heat of formation + Delta-G solvation = -17.157711 kcal Electronic energy + Delta-G solvation = -19628.249844 eV Core-core repulsion = 16899.891526 eV Total energy + Delta-G solvation = -2728.358318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.49773 -37.54246 -34.22663 -32.41808 -30.99189 -29.95457 -29.65312 -26.26362 -25.04532 -23.34342 -22.96745 -21.28187 -20.57721 -19.50121 -19.22923 -16.41006 -15.83868 -15.11388 -14.86368 -14.52968 -14.23789 -13.68831 -13.62798 -13.48647 -13.44964 -13.02903 -12.44662 -12.36389 -12.20504 -11.95324 -11.65921 -11.37479 -11.12557 -11.01386 -10.84514 -10.70725 -10.55211 -10.41092 -10.26650 -10.06471 -9.89152 -9.48469 -9.39002 -8.71895 -8.40837 -8.34009 -6.66567 -5.80043 -3.94193 3.36370 3.44778 3.47750 3.87526 4.53141 4.84503 4.88513 4.94415 5.10095 5.26918 5.31338 5.36126 5.46077 5.49506 5.54812 5.66364 5.68266 5.72329 5.78934 5.85067 5.91459 6.04644 6.09704 6.17030 6.22086 6.29012 6.37289 6.40601 6.55905 6.60819 6.65944 6.77998 6.97741 6.99711 7.03635 7.05766 7.11731 7.65181 7.98378 8.33382 8.72900 9.04348 9.23465 9.74390 11.24084 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.004966 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.310632 B = 5637.003044 C = 6272.763726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.112 4.112 5 C -0.080 4.080 6 C -0.079 4.079 7 H 0.063 0.937 8 C -0.149 4.149 9 C 0.057 3.943 10 N -0.649 5.649 11 C 0.221 3.779 12 H 0.035 0.965 13 C -0.536 4.536 14 H 0.052 0.948 15 C 0.082 3.918 16 N -0.848 5.848 17 Si 0.880 3.120 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.137 4.137 22 C -0.112 4.112 23 C 0.056 3.944 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.021 0.979 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.318 0.682 37 H 0.254 0.746 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 -5.669 1.176 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.150 4.150 5 C -0.099 4.099 6 C -0.097 4.097 7 H 0.081 0.919 8 C -0.189 4.189 9 C -0.074 4.074 10 N -0.276 5.276 11 C 0.114 3.886 12 H 0.052 0.948 13 C -0.575 4.575 14 H 0.071 0.929 15 C -0.124 4.124 16 N -0.483 5.483 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.177 4.177 22 C -0.149 4.149 23 C -0.071 4.071 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.418 -6.139 0.395 16.600 hybrid contribution -0.851 1.456 1.110 2.019 sum -16.269 -4.683 1.505 16.996 Atomic orbital electron populations 1.22341 0.87827 1.01747 1.00406 1.61939 1.07056 1.14276 1.43584 1.22132 0.96479 0.88521 1.00000 1.21680 0.92912 1.01057 0.99362 1.21239 0.95682 0.94979 0.97998 1.21219 0.92321 0.97916 0.98286 0.91896 1.22405 0.99619 0.98925 0.97921 1.21979 0.90250 0.94725 1.00440 1.60941 1.60866 0.99958 1.05852 1.19091 0.85498 0.93343 0.90676 0.94753 1.21039 0.91821 0.91270 1.53321 0.92947 1.24971 0.97395 0.95680 0.94365 1.70125 1.03346 1.27994 1.46855 0.86770 0.79297 0.85737 0.77443 1.19991 1.21146 1.21200 1.22415 1.01164 0.93712 1.00365 1.21689 0.93179 0.97713 1.02360 1.22112 0.96366 0.97590 0.91072 0.91508 0.91611 0.95999 0.95236 0.91075 0.90844 0.91198 0.92213 0.93140 0.93155 0.92372 0.93143 0.86532 0.93642 0.93749 0.92833 0.91247 0.91442 0.95292 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.59 60.06 0.58 0.81 16 2 N -0.54 -6.44 4.91 -242.96 -1.19 -7.63 16 3 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 4 C -0.11 -1.55 4.96 -26.65 -0.13 -1.68 16 5 C -0.08 -1.14 1.84 -90.50 -0.17 -1.31 16 6 C -0.08 -1.33 1.84 -90.51 -0.17 -1.50 16 7 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.15 -2.46 4.94 -26.65 -0.13 -2.59 16 9 C 0.06 1.11 6.55 -3.83 -0.03 1.09 16 10 N -0.65 -15.32 5.81 -107.98 -0.63 -15.94 16 11 C 0.22 5.47 2.29 -68.87 -0.16 5.32 16 12 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 13 C -0.54 -14.72 8.70 -34.44 -0.30 -15.02 16 14 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 15 C 0.08 2.30 5.39 -17.82 -0.10 2.21 16 16 N -0.85 -24.88 12.77 55.43 0.71 -24.17 16 17 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.14 -2.77 4.16 -26.66 -0.11 -2.88 16 22 C -0.11 -1.40 4.96 -26.65 -0.13 -1.54 16 23 C 0.06 0.65 5.46 -3.83 -0.02 0.62 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 29 H 0.07 1.06 6.64 -51.93 -0.35 0.71 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.74 6.64 -51.93 -0.35 0.39 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.32 7.39 8.79 -39.29 -0.35 7.05 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.81 6.64 -51.93 -0.35 0.47 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -28.73 322.06 -10.19 -38.92 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.02 Total: 3.44 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.88 Total: -15.80 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -1.11 Total: -47.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.73 -10.19 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259621387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.763 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds