Wall clock time and date at job start Mon Mar 30 2020 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 111.00217 * 2 1 4 4 C 1.53035 * 109.52865 * 185.83769 * 3 2 1 5 5 C 1.53119 * 109.27728 * 300.82018 * 4 3 2 6 6 C 1.52993 * 109.52432 * 177.55486 * 5 4 3 7 7 H 1.08996 * 109.52563 * 300.12926 * 6 5 4 8 8 C 1.53119 * 109.52432 * 179.97438 * 6 5 4 9 9 C 1.53043 * 109.27960 * 182.44508 * 8 6 5 10 10 N 1.46847 * 109.52410 * 59.17697 * 9 8 6 11 11 C 1.46847 * 111.19846 * 298.26001 * 10 9 8 12 12 H 1.09002 * 109.46448 * 301.72463 * 11 10 9 13 13 C 1.50701 * 109.46132 * 181.74716 * 11 10 9 14 14 H 1.08003 * 119.99842 * 239.98199 * 13 11 10 15 15 C 1.37882 * 119.99886 * 59.97863 * 13 11 10 16 16 N 1.31515 * 119.99812 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99589 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47447 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47485 * 120.00159 * 17 15 13 20 20 H 1.48510 * 109.46736 * 239.99879 * 17 15 13 21 21 C 1.53044 * 109.51335 * 61.73741 * 11 10 9 22 22 C 1.53127 * 109.15883 * 57.65245 * 5 4 3 23 23 C 1.46847 * 110.99923 * 124.20704 * 2 1 3 24 24 H 1.09003 * 109.46950 * 60.00067 * 1 2 3 25 25 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47594 * 299.99878 * 1 2 3 27 27 H 1.09004 * 109.46267 * 65.81586 * 3 2 1 28 28 H 1.09005 * 109.45055 * 305.85001 * 3 2 1 29 29 H 1.09000 * 109.50422 * 180.87948 * 4 3 2 30 30 H 1.08999 * 109.53347 * 60.77719 * 4 3 2 31 31 H 1.08996 * 109.52282 * 297.68584 * 5 4 3 32 32 H 1.09000 * 109.50319 * 62.50380 * 8 6 5 33 33 H 1.08998 * 109.50623 * 302.38155 * 8 6 5 34 34 H 1.09004 * 109.45911 * 299.16296 * 9 8 6 35 35 H 1.08994 * 109.45457 * 179.19516 * 9 8 6 36 36 H 1.00899 * 110.99639 * 62.35757 * 10 9 8 37 37 H 0.96999 * 119.99313 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.49858 * 60.76701 * 21 11 10 39 39 H 1.09000 * 109.49965 * 180.88251 * 21 11 10 40 40 H 1.09001 * 109.50237 * 62.28792 * 22 5 4 41 41 H 1.09005 * 109.49985 * 182.40234 * 22 5 4 42 42 H 1.08992 * 109.46454 * 294.18019 * 23 2 1 43 43 H 1.09000 * 109.46289 * 54.15025 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5371 1.0145 6 6 5.6360 0.4450 0.8406 7 1 5.8652 -0.0541 -0.1009 8 6 6.2367 -0.3516 2.0021 9 6 7.7596 -0.3883 1.8555 10 7 8.2858 0.9827 1.8548 11 6 7.7595 1.7528 0.7207 12 1 8.0223 1.2525 -0.2114 13 6 8.3563 3.1366 0.7334 14 1 7.7138 4.0010 0.8143 15 6 9.7224 3.2991 0.6417 16 7 10.5047 2.2464 0.5437 17 14 10.4621 5.0143 0.6581 18 1 9.3764 6.0205 0.7764 19 1 11.3859 5.1440 1.8135 20 1 11.2121 5.2419 -0.6033 21 6 6.2365 1.8532 0.8337 22 6 3.5180 -0.8714 1.0209 23 6 1.9952 -0.7707 1.1338 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7323 1.8609 0.9375 28 1 1.5633 1.9255 -0.8331 29 1 3.9098 2.3513 -0.1310 30 1 3.7819 0.8572 -1.0906 31 1 3.8895 1.0361 1.9560 32 1 5.8450 -1.3687 1.9869 33 1 5.9735 0.1262 2.9458 34 1 8.0225 -0.8787 0.9181 35 1 8.1913 -0.9427 2.6887 36 1 8.0887 1.4460 2.7292 37 1 11.4657 2.3607 0.4796 38 1 5.9734 2.3658 1.7590 39 1 5.8446 2.4116 -0.0165 40 1 3.7813 -1.3836 0.0954 41 1 3.9099 -1.4302 1.8709 42 1 1.7323 -0.2708 2.0660 43 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259621387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:46 Heat of formation + Delta-G solvation = -35.748281 kcal Electronic energy + Delta-G solvation = -19629.055991 eV Core-core repulsion = 16899.891526 eV Total energy + Delta-G solvation = -2729.164466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69772 -38.91810 -35.60818 -34.31993 -32.16510 -31.33370 -31.25244 -27.38241 -26.91670 -24.53985 -24.15687 -22.66044 -22.16179 -20.86472 -20.56988 -18.42679 -16.88436 -16.49977 -16.09056 -16.00360 -15.55905 -15.28153 -14.96757 -14.76093 -14.68199 -14.56706 -13.91439 -13.60643 -13.38865 -13.23840 -12.95781 -12.82249 -12.55749 -12.52715 -12.35974 -12.14373 -12.10689 -11.95816 -11.63383 -11.51073 -11.34067 -11.12420 -10.91851 -10.53164 -10.49192 -9.26960 -8.46618 -7.93114 -6.15552 1.42924 1.45052 1.55460 2.48812 3.02734 3.26889 3.72138 3.79880 3.88020 4.05831 4.20042 4.24642 4.30622 4.37592 4.50463 4.54729 4.58096 4.63080 4.64839 4.70508 4.76271 4.81189 4.90172 4.94633 5.00341 5.01504 5.05029 5.11943 5.16135 5.20474 5.30391 5.38912 5.45300 5.46083 5.55567 5.71784 5.84682 6.13909 6.18045 6.27288 6.72192 7.19668 7.21651 7.57444 9.09224 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.004966 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.310632 B = 5637.003044 C = 6272.763726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.061 3.939 4 C -0.111 4.111 5 C -0.072 4.072 6 C -0.071 4.071 7 H 0.049 0.951 8 C -0.136 4.136 9 C 0.057 3.943 10 N -0.671 5.671 11 C 0.224 3.776 12 H -0.007 1.007 13 C -0.553 4.553 14 H 0.048 0.952 15 C 0.033 3.967 16 N -0.882 5.882 17 Si 0.946 3.054 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.123 4.123 22 C -0.107 4.107 23 C 0.058 3.942 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.319 0.681 37 H 0.253 0.747 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.031 0.969 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 -5.945 1.997 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.066 4.066 4 C -0.149 4.149 5 C -0.090 4.090 6 C -0.090 4.090 7 H 0.067 0.933 8 C -0.176 4.176 9 C -0.073 4.073 10 N -0.299 5.299 11 C 0.116 3.884 12 H 0.011 0.989 13 C -0.591 4.591 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.519 5.519 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.163 4.163 22 C -0.145 4.145 23 C -0.069 4.069 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.264 -6.417 1.216 18.458 hybrid contribution -0.277 1.513 0.822 1.744 sum -17.541 -4.903 2.038 18.327 Atomic orbital electron populations 1.22393 0.86205 1.02733 1.00935 1.61941 1.08612 1.13842 1.43935 1.22046 0.94958 0.89189 1.00443 1.21628 0.94512 1.00120 0.98660 1.21126 0.93358 0.96517 0.98048 1.21115 0.94386 0.95485 0.98005 0.93253 1.22257 0.96959 1.00548 0.97813 1.21988 0.92694 0.92384 1.00252 1.60693 1.62392 1.01583 1.05265 1.18864 0.88276 0.91859 0.89426 0.98944 1.21421 0.92256 0.92517 1.52932 0.93333 1.25704 0.97878 0.99342 0.94079 1.70259 1.03441 1.30102 1.48058 0.85720 0.78397 0.81256 0.77384 1.19348 1.20803 1.20907 1.22180 0.98153 0.96037 0.99938 1.21638 0.94269 0.96135 1.02410 1.22109 0.95288 0.98491 0.91049 0.90885 0.90434 0.95556 0.95103 0.90223 0.92024 0.92278 0.92230 0.90289 0.92405 0.94032 0.91531 0.86452 0.93752 0.93875 0.93385 0.92011 0.90406 0.95054 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.63 16 2 N -0.56 -11.84 4.91 -922.60 -4.53 -16.37 16 3 C 0.06 1.38 5.46 86.33 0.47 1.85 16 4 C -0.11 -2.97 4.96 30.65 0.15 -2.82 16 5 C -0.07 -1.94 1.84 -10.71 -0.02 -1.96 16 6 C -0.07 -2.37 1.84 -10.72 -0.02 -2.39 16 7 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 8 C -0.14 -4.27 4.94 30.65 0.15 -4.12 16 9 C 0.06 2.21 6.55 86.33 0.57 2.78 16 10 N -0.67 -32.24 5.81 -495.54 -2.88 -35.11 16 11 C 0.22 11.41 2.29 44.19 0.10 11.51 16 12 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 13 C -0.55 -31.03 8.70 25.60 0.22 -30.80 16 14 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 15 C 0.03 1.88 5.39 84.66 0.46 2.34 16 16 N -0.88 -52.92 12.77 21.45 0.27 -52.64 16 17 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 C -0.12 -5.05 4.16 30.64 0.13 -4.93 16 22 C -0.11 -2.42 4.96 30.65 0.15 -2.27 16 23 C 0.06 1.16 5.46 86.33 0.47 1.63 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.06 8.09 -2.38 -0.02 1.04 16 26 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 1.63 8.12 -2.38 -0.02 1.62 16 29 H 0.06 1.76 6.64 -2.39 -0.02 1.75 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.07 6.64 -2.39 -0.02 2.06 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.32 14.95 8.79 -89.69 -0.79 14.16 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.98 6.64 -2.39 -0.02 1.96 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.61 6.64 -2.38 -0.02 1.59 16 42 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 Total: -1.00 -62.25 322.06 -0.88 -63.14 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.17 Total: 22.09 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.06 Total: -27.56 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -7.13 Total: -104.12 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -62.25 -0.88 -63.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259621387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.390 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds