Wall clock time and date at job start Mon Mar 30 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46838 * 111.00095 * 2 1 4 4 C 1.53038 * 109.52324 * 185.83553 * 3 2 1 5 5 C 1.53110 * 109.28064 * 300.82325 * 4 3 2 6 6 C 1.52997 * 109.52493 * 177.55763 * 5 4 3 7 7 H 1.08996 * 109.52571 * 300.13076 * 6 5 4 8 8 C 1.53124 * 109.52546 * 179.97438 * 6 5 4 9 9 C 1.53032 * 109.27645 * 182.44167 * 8 6 5 10 10 N 1.46843 * 109.52699 * 59.18204 * 9 8 6 11 11 C 1.46841 * 111.19768 * 298.25393 * 10 9 8 12 12 H 1.09000 * 109.46746 * 181.74436 * 11 10 9 13 13 C 1.50697 * 109.46611 * 301.72922 * 11 10 9 14 14 H 1.08002 * 120.00599 * 120.02104 * 13 11 10 15 15 C 1.37880 * 119.99675 * 300.01637 * 13 11 10 16 16 N 1.31517 * 120.00210 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 120.00019 * 0.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 C 1.53041 * 109.51470 * 61.73842 * 11 10 9 22 22 C 1.53124 * 109.16236 * 57.65309 * 5 4 3 23 23 C 1.46849 * 110.99477 * 124.21329 * 2 1 3 24 24 H 1.09002 * 109.46936 * 59.99827 * 1 2 3 25 25 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47545 * 299.99790 * 1 2 3 27 27 H 1.09009 * 109.46357 * 65.82190 * 3 2 1 28 28 H 1.08994 * 109.45821 * 305.85333 * 3 2 1 29 29 H 1.09007 * 109.50367 * 180.87971 * 4 3 2 30 30 H 1.08996 * 109.53058 * 60.78569 * 4 3 2 31 31 H 1.09001 * 109.52594 * 297.68555 * 5 4 3 32 32 H 1.08999 * 109.50025 * 62.49958 * 8 6 5 33 33 H 1.08996 * 109.53604 * 302.40151 * 8 6 5 34 34 H 1.09004 * 109.46760 * 299.16051 * 9 8 6 35 35 H 1.09010 * 109.45371 * 179.19258 * 9 8 6 36 36 H 1.00899 * 111.00003 * 62.35621 * 10 9 8 37 37 H 0.96998 * 119.99640 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.50780 * 60.76266 * 21 11 10 39 39 H 1.09001 * 109.50782 * 180.88567 * 21 11 10 40 40 H 1.08999 * 109.49793 * 62.28804 * 22 5 4 41 41 H 1.08998 * 109.50658 * 182.40388 * 22 5 4 42 42 H 1.08998 * 109.46220 * 294.17445 * 23 2 1 43 43 H 1.08992 * 109.46657 * 54.15688 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5369 1.0144 6 6 5.6360 0.4448 0.8406 7 1 5.8652 -0.0542 -0.1009 8 6 6.2368 -0.3519 2.0021 9 6 7.7596 -0.3887 1.8553 10 7 8.2858 0.9822 1.8548 11 6 7.7596 1.7525 0.7207 12 1 8.1912 2.7534 0.7299 13 6 8.1229 1.0608 -0.5679 14 1 7.3456 0.7261 -1.2389 15 6 9.4476 0.8554 -0.8903 16 7 9.7647 0.2513 -2.0147 17 14 10.7920 1.4338 0.2705 18 1 11.1808 2.8244 -0.0762 19 1 10.2905 1.3939 1.6678 20 1 11.9733 0.5430 0.1429 21 6 6.2367 1.8530 0.8337 22 6 3.5181 -0.8716 1.0209 23 6 1.9951 -0.7709 1.1337 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7324 1.8608 0.9376 28 1 1.5634 1.9255 -0.8330 29 1 3.9100 2.3512 -0.1309 30 1 3.7819 0.8571 -1.0905 31 1 3.8896 1.0359 1.9560 32 1 5.8450 -1.3690 1.9868 33 1 5.9736 0.1252 2.9461 34 1 8.0225 -0.8790 0.9179 35 1 8.1914 -0.9431 2.6887 36 1 8.0888 1.4455 2.7292 37 1 10.6967 0.1065 -2.2413 38 1 5.9734 2.3655 1.7590 39 1 5.8447 2.4114 -0.0164 40 1 3.7814 -1.3837 0.0954 41 1 3.9098 -1.4305 1.8708 42 1 1.7323 -0.2710 2.0660 43 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259621388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:49 Heat of formation + Delta-G solvation = -6.999596 kcal Electronic energy + Delta-G solvation = -19999.685102 eV Core-core repulsion = 17271.767272 eV Total energy + Delta-G solvation = -2727.917829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.51313 -37.75334 -34.28098 -32.16118 -30.98596 -30.11710 -29.88234 -26.32253 -25.25270 -23.36982 -23.01031 -21.38447 -20.61232 -19.44735 -18.86805 -16.29322 -15.85809 -15.25730 -15.06057 -14.66900 -14.25987 -13.67712 -13.63083 -13.55073 -13.27219 -12.78883 -12.50267 -12.39671 -12.22364 -12.09387 -11.68733 -11.60219 -11.16931 -11.00416 -10.84626 -10.66285 -10.37814 -10.21970 -10.16127 -10.01377 -9.67245 -9.40632 -9.24580 -8.87246 -8.39122 -8.34525 -6.84550 -5.90710 -3.96373 3.56560 3.66653 3.92509 3.98789 4.79142 4.89452 4.93937 5.01510 5.15215 5.28539 5.31731 5.35607 5.50941 5.54610 5.57108 5.66360 5.72072 5.76420 5.82068 5.88547 5.95249 5.96870 6.11468 6.22872 6.23766 6.34003 6.36891 6.43054 6.54395 6.60418 6.63168 6.90394 6.93455 6.96568 7.07009 7.09183 7.22005 7.36239 7.77193 8.14863 8.51177 8.78127 9.10944 9.76147 11.19301 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037836 B = 0.005570 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.860056 B = 5025.450364 C = 5237.514690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.057 3.943 4 C -0.112 4.112 5 C -0.081 4.081 6 C -0.069 4.069 7 H 0.084 0.916 8 C -0.141 4.141 9 C 0.066 3.934 10 N -0.677 5.677 11 C 0.177 3.823 12 H 0.035 0.965 13 C -0.511 4.511 14 H 0.070 0.930 15 C 0.081 3.919 16 N -0.905 5.905 17 Si 0.861 3.139 18 H -0.299 1.299 19 H -0.193 1.193 20 H -0.306 1.306 21 C -0.126 4.126 22 C -0.112 4.112 23 C 0.057 3.943 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.020 0.980 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.305 0.695 37 H 0.260 0.740 38 H 0.031 0.969 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.198 -0.164 8.187 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.070 4.070 4 C -0.150 4.150 5 C -0.100 4.100 6 C -0.088 4.088 7 H 0.102 0.898 8 C -0.181 4.181 9 C -0.064 4.064 10 N -0.305 5.305 11 C 0.070 3.930 12 H 0.052 0.948 13 C -0.550 4.550 14 H 0.088 0.912 15 C -0.122 4.122 16 N -0.543 5.543 17 Si 0.688 3.312 18 H -0.226 1.226 19 H -0.114 1.114 20 H -0.234 1.234 21 C -0.165 4.165 22 C -0.150 4.150 23 C -0.070 4.070 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.318 -0.625 7.341 16.102 hybrid contribution -0.522 0.787 1.369 1.663 sum -14.840 0.162 8.710 17.208 Atomic orbital electron populations 1.22341 0.87871 1.01751 1.00318 1.61919 1.06989 1.14240 1.43634 1.22127 0.96593 0.88534 0.99786 1.21670 0.92730 1.00799 0.99765 1.21260 0.96163 0.95003 0.97559 1.21077 0.91149 0.96921 0.99635 0.89784 1.22249 0.99160 0.99305 0.97340 1.21810 0.90474 0.92187 1.01951 1.61628 1.60893 1.02952 1.05040 1.19597 0.88604 0.94125 0.90712 0.94759 1.20816 0.93022 1.39235 1.01881 0.91218 1.24991 0.99232 0.93482 0.94492 1.69975 1.18115 1.42403 1.23800 0.87279 0.79476 0.76803 0.87601 1.22648 1.11431 1.23384 1.22118 0.99690 0.95574 0.99116 1.21684 0.93012 0.97708 1.02580 1.22111 0.96475 0.97550 0.90907 0.91518 0.91604 0.96102 0.95449 0.91131 0.91184 0.90841 0.92692 0.92838 0.93926 0.89295 0.93608 0.87962 0.93087 0.95031 0.92369 0.90960 0.91505 0.95455 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.59 60.07 0.58 0.83 16 2 N -0.54 -6.79 4.91 -242.96 -1.19 -7.98 16 3 C 0.06 0.72 5.46 -3.84 -0.02 0.70 16 4 C -0.11 -1.61 4.96 -26.65 -0.13 -1.74 16 5 C -0.08 -1.19 1.84 -90.50 -0.17 -1.35 16 6 C -0.07 -1.21 1.59 -90.50 -0.14 -1.36 16 7 H 0.08 1.76 6.74 -51.93 -0.35 1.41 16 8 C -0.14 -2.35 4.94 -26.65 -0.13 -2.48 16 9 C 0.07 1.28 6.30 -3.84 -0.02 1.25 16 10 N -0.68 -14.01 3.27 -107.99 -0.35 -14.37 16 11 C 0.18 3.97 2.45 -68.88 -0.17 3.80 16 12 H 0.03 0.80 7.57 -51.93 -0.39 0.41 16 13 C -0.51 -13.82 7.05 -34.44 -0.24 -14.07 16 14 H 0.07 2.06 7.01 -52.49 -0.37 1.69 16 15 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 16 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 17 Si 0.86 21.74 26.94 -169.99 -4.58 17.16 16 18 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 19 H -0.19 -4.50 5.17 56.52 0.29 -4.21 16 20 H -0.31 -8.02 7.11 56.52 0.40 -7.61 16 21 C -0.13 -2.38 4.42 -26.66 -0.12 -2.49 16 22 C -0.11 -1.51 4.96 -26.65 -0.13 -1.64 16 23 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.07 1.01 6.64 -51.93 -0.35 0.66 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.83 6.64 -51.93 -0.35 0.48 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.05 6.99 -51.93 -0.36 1.69 16 35 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.30 5.59 8.86 -39.29 -0.35 5.24 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 1.12 6.64 -51.93 -0.34 0.78 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.85 6.64 -51.93 -0.35 0.51 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -29.62 310.72 -9.43 -39.05 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.94 Total: 4.28 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.82 Total: -15.66 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.77 Total: -49.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.58 Total: 17.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.62 -9.43 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259621388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds