Wall clock time and date at job start Mon Mar 30 2020 03:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46850 * 111.00333 * 2 1 4 4 C 1.53036 * 109.52384 * 174.16360 * 3 2 1 5 5 C 1.53120 * 109.27700 * 59.18090 * 4 3 2 6 6 C 1.53003 * 109.51699 * 182.37727 * 5 4 3 7 7 H 1.08997 * 109.52467 * 60.12478 * 6 5 4 8 8 C 1.53123 * 109.51962 * 180.31381 * 6 5 4 9 9 C 1.53034 * 109.27702 * 177.55665 * 8 6 5 10 10 N 1.46845 * 109.52784 * 300.82003 * 9 8 6 11 11 C 1.46852 * 111.19527 * 61.74065 * 10 9 8 12 12 H 1.09000 * 109.46081 * 178.24208 * 11 10 9 13 13 C 1.50702 * 109.45919 * 58.27817 * 11 10 9 14 14 H 1.07999 * 119.99472 * 239.94388 * 13 11 10 15 15 C 1.37868 * 120.00161 * 59.94739 * 13 11 10 16 16 N 1.31515 * 120.00469 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00107 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47562 * 119.99837 * 17 15 13 20 20 H 1.48502 * 109.46926 * 240.00218 * 17 15 13 21 21 C 1.53036 * 109.52646 * 298.26175 * 11 10 9 22 22 C 1.53120 * 109.15972 * 302.34018 * 5 4 3 23 23 C 1.46850 * 110.99945 * 235.78931 * 2 1 3 24 24 H 1.09000 * 109.47541 * 59.99587 * 1 2 3 25 25 H 1.08997 * 109.47705 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46680 * 300.00230 * 1 2 3 27 27 H 1.08995 * 109.45831 * 54.14149 * 3 2 1 28 28 H 1.08998 * 109.45719 * 294.17998 * 3 2 1 29 29 H 1.08998 * 109.49982 * 179.12006 * 4 3 2 30 30 H 1.08997 * 109.50239 * 299.19542 * 4 3 2 31 31 H 1.08996 * 109.52458 * 62.25353 * 5 4 3 32 32 H 1.09000 * 109.50596 * 297.50060 * 8 6 5 33 33 H 1.09004 * 109.50099 * 57.61809 * 8 6 5 34 34 H 1.09001 * 109.46085 * 180.80810 * 9 8 6 35 35 H 1.08998 * 109.45525 * 60.83650 * 9 8 6 36 36 H 1.00900 * 111.00377 * 185.84121 * 10 9 8 37 37 H 0.96995 * 120.00613 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.50003 * 299.23646 * 21 11 10 39 39 H 1.08994 * 109.50560 * 179.12107 * 21 11 10 40 40 H 1.09000 * 109.49976 * 177.59581 * 22 5 4 41 41 H 1.08997 * 109.50809 * 297.71813 * 22 5 4 42 42 H 1.09007 * 109.46080 * 65.82377 * 23 2 1 43 43 H 1.09001 * 109.46443 * 305.85821 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1187 0.5369 -1.0145 6 6 5.6362 0.4462 -0.8415 7 1 5.8663 -0.0563 0.0980 8 6 6.2377 -0.3443 -2.0068 9 6 7.7607 -0.3796 -1.8607 10 7 8.2850 0.9921 -1.8539 11 6 7.7579 1.7564 -0.7162 12 1 8.1883 2.7578 -0.7208 13 6 8.1227 1.0592 0.5691 14 1 7.3461 0.7207 1.2390 15 6 9.4477 0.8536 0.8899 16 7 10.3934 1.2653 0.0740 17 14 9.8998 -0.0113 2.4827 18 1 8.6615 -0.3730 3.2183 19 1 10.6713 -1.2424 2.1759 20 1 10.7259 0.8947 3.3206 21 6 6.2349 1.8554 -0.8281 22 6 3.5180 -0.8715 -1.0209 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5634 1.9257 0.8329 28 1 1.7324 1.8608 -0.9376 29 1 3.9099 2.3511 0.1309 30 1 3.7814 0.8573 1.0908 31 1 3.8886 1.0354 -1.9561 32 1 5.8474 -1.3620 -1.9961 33 1 5.9735 0.1375 -2.9482 34 1 8.1930 -0.9295 -2.6966 35 1 8.0243 -0.8738 -0.9256 36 1 9.2940 0.9935 -1.8542 37 1 11.3256 1.1210 0.2998 38 1 5.9706 2.3719 -1.7509 39 1 5.8425 2.4094 0.0247 40 1 3.9097 -1.4303 -1.8709 41 1 3.7813 -1.3837 -0.0955 42 1 1.7324 -0.2708 -2.0661 43 1 1.5633 -1.7716 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259621389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:52 Heat of formation + Delta-G solvation = -38.087019 kcal Electronic energy + Delta-G solvation = -19964.419728 eV Core-core repulsion = 17235.153847 eV Total energy + Delta-G solvation = -2729.265881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62109 -38.89200 -35.68977 -34.03716 -32.11973 -31.39837 -31.14256 -27.49987 -26.96269 -24.50924 -24.27623 -22.68252 -22.06489 -20.60715 -20.30007 -17.95866 -17.26632 -16.53063 -16.47779 -15.95871 -15.59759 -15.21745 -14.89394 -14.70551 -14.62943 -14.24169 -13.74110 -13.47251 -13.39479 -13.27795 -13.10832 -12.88757 -12.76789 -12.38489 -12.35299 -12.17775 -12.02599 -11.87144 -11.55932 -11.40249 -11.34133 -11.09925 -10.74877 -10.54879 -10.33017 -9.21924 -8.89830 -8.03227 -6.26622 1.33635 1.37517 1.47321 2.38746 3.06919 3.11862 3.83278 3.87038 3.95737 4.09380 4.25466 4.33695 4.36822 4.48361 4.57981 4.63118 4.67111 4.70488 4.76021 4.79158 4.88558 4.92360 4.95823 5.03319 5.03727 5.10861 5.13908 5.17838 5.25603 5.33026 5.39881 5.48057 5.56760 5.58268 5.66836 5.78570 5.84029 6.18659 6.22702 6.24163 6.74986 6.97142 7.12255 7.46406 8.90003 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.005782 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.496519 B = 4841.467118 C = 5184.496715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.561 5.561 3 C 0.063 3.937 4 C -0.110 4.110 5 C -0.073 4.073 6 C -0.061 4.061 7 H 0.046 0.954 8 C -0.094 4.094 9 C 0.067 3.933 10 N -0.690 5.690 11 C 0.200 3.800 12 H -0.002 1.002 13 C -0.536 4.536 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.921 5.921 17 Si 0.945 3.055 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.086 4.086 22 C -0.109 4.109 23 C 0.060 3.940 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.006 0.994 36 H 0.339 0.661 37 H 0.263 0.737 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -3.629 -2.748 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.065 4.065 4 C -0.148 4.148 5 C -0.092 4.092 6 C -0.079 4.079 7 H 0.065 0.935 8 C -0.132 4.132 9 C -0.063 4.063 10 N -0.321 5.321 11 C 0.091 3.909 12 H 0.016 0.984 13 C -0.576 4.576 14 H 0.066 0.934 15 C -0.180 4.180 16 N -0.562 5.562 17 Si 0.771 3.229 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.124 4.124 22 C -0.146 4.146 23 C -0.067 4.067 24 H 0.046 0.954 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.157 0.843 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.214 -3.608 -2.783 17.807 hybrid contribution 1.244 -0.193 1.033 1.629 sum -15.970 -3.801 -1.750 16.509 Atomic orbital electron populations 1.22382 0.86203 1.02641 1.00956 1.61923 1.08609 1.14036 1.44062 1.22046 0.94883 0.89065 1.00533 1.21620 0.94516 1.00201 0.98481 1.21155 0.93558 0.96311 0.98150 1.20952 0.93504 0.95591 0.97880 0.93549 1.21521 0.93879 0.99706 0.98062 1.21632 0.95992 0.90941 0.97715 1.60963 1.14144 1.12904 1.44111 1.19045 0.91773 0.92426 0.87657 0.98366 1.22049 0.91724 1.37321 1.06527 0.93379 1.25665 0.96716 0.96204 0.99411 1.69842 1.00202 1.48110 1.38004 0.85706 0.78077 0.78376 0.80696 1.19597 1.20840 1.20720 1.21475 0.95254 0.96645 0.99059 1.21640 0.94414 0.96457 1.02128 1.22089 0.95098 0.98406 0.91134 0.95387 0.90609 0.90947 0.90293 0.94732 0.91637 0.92913 0.91716 0.91003 0.92106 0.92901 0.97549 0.84267 0.92794 0.93604 0.93294 0.90478 0.92609 0.94724 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.59 127.69 1.22 1.66 16 2 N -0.56 -12.63 4.91 -922.59 -4.53 -17.16 16 3 C 0.06 1.44 5.46 86.32 0.47 1.92 16 4 C -0.11 -3.10 4.95 30.65 0.15 -2.94 16 5 C -0.07 -2.11 1.84 -10.71 -0.02 -2.13 16 6 C -0.06 -2.21 1.59 -10.71 -0.02 -2.23 16 7 H 0.05 1.95 6.74 -2.39 -0.02 1.93 16 8 C -0.09 -3.33 4.97 30.65 0.15 -3.18 16 9 C 0.07 2.92 6.30 86.33 0.54 3.46 16 10 N -0.69 -33.74 6.60 -495.56 -3.27 -37.02 16 11 C 0.20 10.16 3.04 44.19 0.13 10.30 16 12 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 13 C -0.54 -29.14 6.47 25.60 0.17 -28.98 16 14 H 0.05 2.63 6.76 -2.91 -0.02 2.61 16 15 C 0.02 1.04 5.39 84.65 0.46 1.50 16 16 N -0.92 -52.42 11.56 21.44 0.25 -52.17 16 17 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 C -0.09 -3.59 4.43 30.65 0.14 -3.46 16 22 C -0.11 -2.74 4.97 30.65 0.15 -2.58 16 23 C 0.06 1.29 5.46 86.32 0.47 1.76 16 24 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.88 6.63 -2.39 -0.02 1.87 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.20 6.65 -2.39 -0.02 2.18 16 33 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.01 0.31 6.99 -2.39 -0.02 0.29 16 36 H 0.34 18.16 6.95 -89.69 -0.62 17.54 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 2.00 6.64 -2.39 -0.02 1.98 16 40 H 0.08 1.79 6.65 -2.39 -0.02 1.77 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 Total: -1.00 -58.49 314.57 -1.17 -59.65 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.34 Total: 25.52 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.02 Total: -24.90 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -7.56 Total: -106.34 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -58.49 -1.17 -59.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259621389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.566 kcal (2) G-P(sol) polarization free energy of solvation -58.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds