Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46851 * 111.00174 * 2 1 4 4 C 1.53034 * 109.52336 * 185.83357 * 3 2 1 5 5 C 1.53115 * 109.28303 * 300.82270 * 4 3 2 6 6 C 1.53000 * 109.52393 * 177.56170 * 5 4 3 7 7 H 1.09001 * 109.57316 * 300.28129 * 6 5 4 8 8 C 1.53114 * 109.52717 * 60.43917 * 6 5 4 9 9 C 1.53035 * 109.28189 * 177.55930 * 8 6 5 10 10 N 1.46848 * 109.52142 * 300.82150 * 9 8 6 11 11 C 1.46847 * 111.19788 * 61.74047 * 10 9 8 12 12 H 1.09006 * 109.46422 * 58.27823 * 11 10 9 13 13 C 1.50703 * 109.46233 * 178.23883 * 11 10 9 14 14 H 1.08000 * 119.99718 * 120.05373 * 13 11 10 15 15 C 1.37882 * 120.00258 * 300.05434 * 13 11 10 16 16 N 1.31513 * 119.99667 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00135 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47231 * 59.99765 * 17 15 13 19 19 H 1.48498 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47126 * 300.00055 * 17 15 13 21 21 C 1.53034 * 109.52486 * 298.25416 * 11 10 9 22 22 C 1.53116 * 109.21289 * 57.61736 * 5 4 3 23 23 C 1.46846 * 110.99981 * 124.20579 * 2 1 3 24 24 H 1.09002 * 109.46656 * 60.00140 * 1 2 3 25 25 H 1.08994 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47329 * 300.00255 * 1 2 3 27 27 H 1.08995 * 109.46226 * 65.82111 * 3 2 1 28 28 H 1.09001 * 109.46263 * 305.85237 * 3 2 1 29 29 H 1.09001 * 109.50539 * 180.87668 * 4 3 2 30 30 H 1.09001 * 109.53417 * 60.78329 * 4 3 2 31 31 H 1.09006 * 109.52011 * 297.68553 * 5 4 3 32 32 H 1.08994 * 109.50522 * 297.50219 * 8 6 5 33 33 H 1.09009 * 109.50039 * 57.62000 * 8 6 5 34 34 H 1.09000 * 109.45907 * 60.83499 * 9 8 6 35 35 H 1.08999 * 109.46252 * 180.82076 * 9 8 6 36 36 H 1.00904 * 111.00007 * 185.83598 * 10 9 8 37 37 H 0.96998 * 119.99708 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.50792 * 299.24185 * 21 11 10 39 39 H 1.09006 * 109.50471 * 179.11839 * 21 11 10 40 40 H 1.09003 * 109.50358 * 62.32801 * 22 5 4 41 41 H 1.09007 * 109.50039 * 182.43683 * 22 5 4 42 42 H 1.09005 * 109.46193 * 294.18163 * 23 2 1 43 43 H 1.09001 * 109.46161 * 54.15079 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1466 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 1 5.8662 -0.0515 -0.1019 8 6 6.2371 1.8532 0.8374 9 6 7.7600 1.7524 0.7246 10 7 8.2858 0.9791 1.8568 11 6 7.7592 -0.3917 1.8537 12 1 8.0221 -0.8797 0.9152 13 6 8.3559 -1.1614 3.0038 14 1 7.7133 -1.5821 3.7632 15 6 9.7220 -1.3285 3.0867 16 7 10.5044 -0.8157 2.1623 17 14 10.4615 -2.2831 4.5118 18 1 9.9301 -3.6698 4.5076 19 1 11.9393 -2.3183 4.3702 20 1 10.1030 -1.6196 5.7911 21 6 6.2363 -0.3549 2.0003 22 6 3.5182 -0.8715 1.0226 23 6 1.9952 -0.7707 1.1338 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.7325 1.8608 0.9375 28 1 1.5635 1.9257 -0.8330 29 1 3.9100 2.3512 -0.1309 30 1 3.7820 0.8571 -1.0905 31 1 3.8896 1.0361 1.9561 32 1 5.8457 2.4139 -0.0114 33 1 5.9739 2.3634 1.7640 34 1 8.0228 1.2544 -0.2087 35 1 8.1921 2.7530 0.7366 36 1 9.2948 0.9788 1.8570 37 1 11.4654 -0.9336 2.2203 38 1 5.9730 0.1206 2.9451 39 1 5.8443 -1.3719 1.9823 40 1 3.7815 -1.3847 0.0977 41 1 3.9101 -1.4293 1.8732 42 1 1.7323 -0.2707 2.0661 43 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259621390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = -39.601577 kcal Electronic energy + Delta-G solvation = -19621.826424 eV Core-core repulsion = 16892.494867 eV Total energy + Delta-G solvation = -2729.331557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61454 -38.81789 -35.75143 -34.30738 -32.16446 -31.47349 -31.25772 -27.51613 -26.97316 -24.56631 -24.17969 -22.67527 -22.09772 -20.63111 -20.26167 -18.50452 -17.11016 -16.59370 -16.22850 -15.97293 -15.54998 -15.29319 -15.15469 -14.76576 -14.63552 -14.28031 -13.83997 -13.72105 -13.50734 -13.29451 -13.14253 -12.79897 -12.66502 -12.43273 -12.21183 -12.16021 -12.05936 -11.93431 -11.68637 -11.41411 -11.32248 -11.27277 -10.70308 -10.62440 -10.48720 -9.23899 -8.77018 -8.16156 -6.28010 1.42127 1.44282 1.51838 2.42830 3.05514 3.09670 3.75805 3.82593 3.90973 4.03852 4.22030 4.25864 4.32853 4.42397 4.51435 4.59574 4.61155 4.65368 4.68190 4.74088 4.79653 4.84502 4.89601 4.95495 5.03642 5.05127 5.06206 5.08803 5.20089 5.22091 5.34481 5.37513 5.41111 5.48226 5.53748 5.71230 5.82811 6.16805 6.20581 6.22228 6.66618 7.02207 7.15658 7.44054 8.92114 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034902 B = 0.004963 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.055468 B = 5640.397470 C = 6282.343661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.059 3.941 4 C -0.107 4.107 5 C -0.071 4.071 6 C -0.073 4.073 7 H 0.046 0.954 8 C -0.096 4.096 9 C 0.050 3.950 10 N -0.693 5.693 11 C 0.214 3.786 12 H -0.049 1.049 13 C -0.530 4.530 14 H 0.055 0.945 15 C 0.018 3.982 16 N -0.927 5.927 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.086 4.086 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.032 0.968 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.061 0.939 34 H -0.003 1.003 35 H 0.067 0.933 36 H 0.345 0.655 37 H 0.265 0.735 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.198 4.327 -4.271 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.284 5.284 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.090 4.090 6 C -0.092 4.092 7 H 0.065 0.935 8 C -0.134 4.134 9 C -0.080 4.080 10 N -0.328 5.328 11 C 0.106 3.894 12 H -0.032 1.032 13 C -0.569 4.569 14 H 0.073 0.927 15 C -0.181 4.181 16 N -0.568 5.568 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.124 4.124 22 C -0.150 4.150 23 C -0.066 4.066 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.015 0.985 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.340 4.345 -4.313 18.389 hybrid contribution 1.257 -0.658 0.628 1.552 sum -16.083 3.687 -3.685 16.907 Atomic orbital electron populations 1.22389 0.86224 1.02572 1.01065 1.61941 1.08590 1.14248 1.43578 1.22105 0.95220 0.88843 1.00736 1.21644 0.94314 1.00487 0.98071 1.21111 0.92961 0.96139 0.98766 1.21152 0.94656 0.95996 0.97407 0.93512 1.21571 0.93413 0.96494 1.01921 1.21972 0.96873 0.97443 0.91686 1.60790 1.14847 1.15330 1.41824 1.18938 0.91844 0.85759 0.92836 1.03183 1.21544 0.92416 1.32996 1.09933 0.92654 1.25798 0.97621 0.96217 0.98459 1.69791 1.04565 1.46935 1.35462 0.85549 0.77000 0.79028 0.79632 1.19666 1.20836 1.19706 1.21526 0.94931 0.98395 0.97551 1.21638 0.94564 0.96931 1.01841 1.22046 0.94906 0.98411 0.91275 0.90484 0.90902 0.95527 0.94961 0.89597 0.90311 0.92004 0.91976 0.89936 0.92006 0.98469 0.91457 0.83399 0.92604 0.93472 0.93225 0.92286 0.91893 0.95036 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.59 127.69 1.22 1.63 16 2 N -0.56 -11.92 4.91 -922.60 -4.53 -16.45 16 3 C 0.06 1.18 5.46 86.32 0.47 1.65 16 4 C -0.11 -2.48 4.96 30.64 0.15 -2.33 16 5 C -0.07 -1.97 1.84 -10.72 -0.02 -1.99 16 6 C -0.07 -2.56 1.84 -10.71 -0.02 -2.58 16 7 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 8 C -0.10 -3.24 4.96 30.64 0.15 -3.08 16 9 C 0.05 2.06 6.55 86.32 0.57 2.63 16 10 N -0.69 -34.93 6.49 -495.56 -3.22 -38.14 16 11 C 0.21 11.32 2.40 44.19 0.11 11.42 16 12 H -0.05 -2.94 8.14 -2.38 -0.02 -2.96 16 13 C -0.53 -30.20 8.76 25.60 0.22 -29.98 16 14 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 15 C 0.02 0.99 5.32 84.66 0.45 1.44 16 16 N -0.93 -53.89 11.48 21.45 0.25 -53.64 16 17 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.09 -3.70 4.17 30.65 0.13 -3.57 16 22 C -0.11 -3.02 4.96 30.65 0.15 -2.87 16 23 C 0.06 1.38 5.46 86.33 0.47 1.86 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 29 H 0.08 1.65 6.65 -2.39 -0.02 1.64 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.08 2.25 6.65 -2.39 -0.02 2.24 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.34 19.07 6.65 -89.69 -0.60 18.47 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.09 6.64 -2.38 -0.02 2.07 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.81 6.64 -2.38 -0.02 1.80 16 42 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -61.43 319.45 -1.06 -62.49 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.36 Total: 25.21 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.06 Total: -25.76 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -7.50 Total: -108.24 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -61.43 -1.06 -62.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259621390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.886 kcal (2) G-P(sol) polarization free energy of solvation -61.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds