Wall clock time and date at job start Mon Mar 30 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47445 * 110.99773 * 2 1 4 4 C 1.54321 * 107.36885 * 236.65545 * 3 2 1 5 5 C 1.55402 * 102.89977 * 337.89616 * 4 3 2 6 6 C 1.47837 * 111.00219 * 239.15042 * 2 1 3 7 7 H 1.09000 * 110.37493 * 27.53755 * 6 2 1 8 8 C 1.52995 * 110.37525 * 265.30546 * 6 2 1 9 9 N 1.46901 * 109.46943 * 174.74227 * 8 6 2 10 10 C 1.46842 * 111.00143 * 288.39469 * 9 8 6 11 11 C 1.53033 * 109.52900 * 174.16199 * 10 9 8 12 12 C 1.53117 * 109.27658 * 59.18077 * 11 10 9 13 13 C 1.53121 * 109.16345 * 302.34680 * 12 11 10 14 14 H 1.08997 * 109.50752 * 297.71735 * 13 12 11 15 15 C 1.50697 * 109.53873 * 177.61026 * 13 12 11 16 16 H 1.07995 * 120.00446 * 240.17766 * 15 13 12 17 17 C 1.37885 * 119.99517 * 60.18080 * 15 13 12 18 18 N 1.31514 * 120.00272 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99822 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47261 * 59.99813 * 19 17 15 21 21 H 1.48499 * 109.47026 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47118 * 300.00089 * 19 17 15 23 23 C 1.46853 * 111.00034 * 164.18944 * 9 8 6 24 24 H 1.09007 * 109.46753 * 60.01484 * 1 2 3 25 25 H 1.09001 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47867 * 300.01279 * 1 2 3 27 27 H 1.09004 * 109.88999 * 356.14062 * 3 2 1 28 28 H 1.09000 * 109.89075 * 117.16947 * 3 2 1 29 29 H 1.08994 * 110.70549 * 96.17664 * 4 3 2 30 30 H 1.08991 * 110.70771 * 219.41530 * 4 3 2 31 31 H 1.08995 * 110.87200 * 277.39549 * 5 4 3 32 32 H 1.08993 * 111.06025 * 153.64889 * 5 4 3 33 33 H 1.09000 * 109.47392 * 294.74009 * 8 6 2 34 34 H 1.08993 * 109.47009 * 54.74066 * 8 6 2 35 35 H 1.09001 * 109.47097 * 294.18222 * 10 9 8 36 36 H 1.09006 * 109.46228 * 54.14821 * 10 9 8 37 37 H 1.09006 * 109.50427 * 299.24439 * 11 10 9 38 38 H 1.08994 * 109.54183 * 179.14306 * 11 10 9 39 39 H 1.09004 * 109.52686 * 182.44597 * 12 11 10 40 40 H 1.09003 * 109.52506 * 62.25541 * 12 11 10 41 41 H 0.96999 * 120.00090 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.45891 * 305.85432 * 23 9 8 43 43 H 1.09004 * 109.46379 * 65.82117 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9183 1.5165 -1.2304 5 6 3.3049 0.0443 -1.5437 6 6 1.9989 -0.7077 -1.1849 7 1 1.2890 -0.6503 -2.0101 8 6 2.2994 -2.1683 -0.8427 9 7 2.7041 -2.8832 -2.0605 10 6 1.5590 -3.0854 -2.9573 11 6 2.0419 -3.6999 -4.2730 12 6 2.7299 -5.0369 -3.9840 13 6 3.8886 -4.8058 -3.0101 14 1 4.6246 -4.1464 -3.4700 15 6 4.5352 -6.1248 -2.6740 16 1 4.5613 -6.4682 -1.6504 17 6 5.0937 -6.8933 -3.6734 18 7 5.0615 -6.4754 -4.9200 19 14 5.8958 -8.5280 -3.2568 20 1 4.8925 -9.4266 -2.6314 21 1 6.4166 -9.1545 -4.4983 22 1 7.0167 -8.3021 -2.3092 23 6 3.3521 -4.1592 -1.7310 24 1 -0.3633 0.5136 -0.8902 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5140 0.8898 27 1 1.1755 2.0892 -0.0690 28 1 2.5672 1.5551 0.9119 29 1 2.3784 1.9591 -2.0674 30 1 3.8018 2.1058 -0.9854 31 1 4.1302 -0.2833 -0.9117 32 1 3.5500 -0.0803 -2.5983 33 1 3.1061 -2.2116 -0.1110 34 1 1.4065 -2.6352 -0.4271 35 1 0.8416 -3.7564 -2.4848 36 1 1.0813 -2.1264 -3.1581 37 1 2.7489 -3.0231 -4.7529 38 1 1.1901 -3.8641 -4.9329 39 1 3.1138 -5.4575 -4.9135 40 1 2.0127 -5.7271 -3.5397 41 1 5.4547 -7.0158 -5.6230 42 1 4.1768 -3.9801 -1.0411 43 1 2.6264 -4.8252 -1.2642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:05 Heat of formation + Delta-G solvation = -3.959849 kcal Electronic energy + Delta-G solvation = -19566.294732 eV Core-core repulsion = 16838.508716 eV Total energy + Delta-G solvation = -2727.786016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.33668 -37.73636 -33.80340 -32.04854 -31.81642 -29.97345 -29.06881 -25.80408 -24.91613 -24.59253 -21.86787 -21.54940 -20.92588 -19.54992 -18.53019 -16.53437 -16.02338 -15.44882 -14.82585 -14.53216 -14.26731 -14.08631 -13.59706 -13.33235 -13.13537 -12.72087 -12.55273 -12.48121 -12.17798 -11.85311 -11.48127 -11.35105 -11.07782 -11.06513 -10.90436 -10.70097 -10.66004 -10.58186 -10.40009 -10.04383 -9.79644 -9.42426 -8.98955 -8.66999 -8.36355 -8.24647 -7.57567 -5.93759 -3.99698 3.34863 3.39366 3.42010 3.84239 4.46260 4.62778 4.77172 4.81963 4.98164 5.22200 5.29813 5.35883 5.36221 5.51460 5.52133 5.69682 5.74449 5.76838 5.83692 5.88951 5.92255 6.11659 6.12475 6.18891 6.26006 6.33449 6.41126 6.47315 6.57136 6.75158 6.79859 6.96609 7.03088 7.07393 7.26562 7.45561 7.73218 7.79647 7.89847 8.13187 8.21654 8.52753 9.04291 9.64333 11.12212 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038081 B = 0.004648 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.089736 B = 6022.196810 C = 6137.389266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.044 3.956 4 C -0.147 4.147 5 C -0.109 4.109 6 C 0.078 3.922 7 H 0.054 0.946 8 C 0.073 3.927 9 N -0.537 5.537 10 C 0.063 3.937 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.070 3.930 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.021 0.979 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 13.614 6.139 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.083 4.083 4 C -0.185 4.185 5 C -0.147 4.147 6 C -0.030 4.030 7 H 0.072 0.928 8 C -0.056 4.056 9 N -0.261 5.261 10 C -0.065 4.065 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.057 4.057 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -7.068 13.590 6.172 16.515 hybrid contribution -0.593 -1.008 -0.071 1.171 sum -7.660 12.583 6.101 15.945 Atomic orbital electron populations 1.22505 0.88015 1.01971 1.00105 1.63346 1.07524 1.13829 1.41225 1.22781 0.97740 0.89165 0.98659 1.22873 0.99689 0.98272 0.97667 1.22629 0.97125 0.92418 1.02523 1.22564 0.95970 0.94381 0.90126 0.92779 1.21886 0.99280 0.91984 0.92407 1.61891 1.27251 1.22944 1.14065 1.22048 0.91530 0.98173 0.94771 1.21668 0.99277 0.99649 0.94859 1.21648 0.96916 0.92965 1.03296 1.18654 0.93327 0.94633 0.89709 0.94787 1.21126 1.36478 1.04119 0.93609 0.92923 1.24926 0.95975 0.97836 0.95050 1.69883 1.45288 1.38015 0.99602 0.86698 0.79776 0.84142 0.77588 1.20413 1.21349 1.20309 1.22295 0.96288 0.86806 1.00271 0.95776 0.91510 0.91668 0.93182 0.90716 0.91894 0.90889 0.90635 0.90180 0.90721 0.95628 0.96094 0.92745 0.92157 0.93724 0.89186 0.95247 0.93055 0.92280 0.96448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.12 60.07 0.55 0.79 16 2 N -0.53 -6.68 5.10 -231.59 -1.18 -7.86 16 3 C 0.04 0.47 6.89 -2.83 -0.02 0.45 16 4 C -0.15 -1.55 6.97 -24.76 -0.17 -1.72 16 5 C -0.11 -1.43 6.39 -24.45 -0.16 -1.58 16 6 C 0.08 1.07 2.49 -66.19 -0.17 0.91 16 7 H 0.05 0.78 6.11 -51.93 -0.32 0.46 16 8 C 0.07 1.17 4.74 -3.83 -0.02 1.15 16 9 N -0.54 -9.97 4.49 -234.67 -1.05 -11.02 16 10 C 0.06 1.12 5.31 -3.84 -0.02 1.10 16 11 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 12 C -0.11 -2.63 5.03 -26.61 -0.13 -2.77 16 13 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 14 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 18 N -0.89 -25.48 11.36 55.43 0.63 -24.85 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.07 1.52 4.67 -3.83 -0.02 1.50 16 24 H 0.02 0.25 8.10 -51.93 -0.42 -0.18 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.04 7.98 -51.93 -0.41 0.63 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.23 7.76 -51.93 -0.40 0.82 16 34 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.87 6.40 -51.93 -0.33 0.53 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.27 7.96 -51.93 -0.41 0.85 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -27.96 325.50 -10.68 -38.65 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.05 Total: -1.91 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.91 Total: -14.28 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -1.61 Total: -43.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.96 -10.68 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.688 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds