Wall clock time and date at job start Mon Mar 30 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47445 * 110.99773 * 2 1 4 4 C 1.54321 * 107.36885 * 236.65545 * 3 2 1 5 5 C 1.55402 * 102.89977 * 337.89616 * 4 3 2 6 6 C 1.47837 * 111.00219 * 239.15042 * 2 1 3 7 7 H 1.09000 * 110.37493 * 27.53755 * 6 2 1 8 8 C 1.52995 * 110.37525 * 265.30546 * 6 2 1 9 9 N 1.46901 * 109.46943 * 174.74227 * 8 6 2 10 10 C 1.46842 * 111.00143 * 288.39469 * 9 8 6 11 11 C 1.53033 * 109.52900 * 174.16199 * 10 9 8 12 12 C 1.53117 * 109.27658 * 59.18077 * 11 10 9 13 13 C 1.53121 * 109.16345 * 302.34680 * 12 11 10 14 14 H 1.08997 * 109.50752 * 297.71735 * 13 12 11 15 15 C 1.50697 * 109.53873 * 177.61026 * 13 12 11 16 16 H 1.07995 * 120.00446 * 240.17766 * 15 13 12 17 17 C 1.37885 * 119.99517 * 60.18080 * 15 13 12 18 18 N 1.31514 * 120.00272 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99822 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47261 * 59.99813 * 19 17 15 21 21 H 1.48499 * 109.47026 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47118 * 300.00089 * 19 17 15 23 23 C 1.46853 * 111.00034 * 164.18944 * 9 8 6 24 24 H 1.09007 * 109.46753 * 60.01484 * 1 2 3 25 25 H 1.09001 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47867 * 300.01279 * 1 2 3 27 27 H 1.09004 * 109.88999 * 356.14062 * 3 2 1 28 28 H 1.09000 * 109.89075 * 117.16947 * 3 2 1 29 29 H 1.08994 * 110.70549 * 96.17664 * 4 3 2 30 30 H 1.08991 * 110.70771 * 219.41530 * 4 3 2 31 31 H 1.08995 * 110.87200 * 277.39549 * 5 4 3 32 32 H 1.08993 * 111.06025 * 153.64889 * 5 4 3 33 33 H 1.09000 * 109.47392 * 294.74009 * 8 6 2 34 34 H 1.08993 * 109.47009 * 54.74066 * 8 6 2 35 35 H 1.09001 * 109.47097 * 294.18222 * 10 9 8 36 36 H 1.09006 * 109.46228 * 54.14821 * 10 9 8 37 37 H 1.09006 * 109.50427 * 299.24439 * 11 10 9 38 38 H 1.08994 * 109.54183 * 179.14306 * 11 10 9 39 39 H 1.09004 * 109.52686 * 182.44597 * 12 11 10 40 40 H 1.09003 * 109.52506 * 62.25541 * 12 11 10 41 41 H 0.96999 * 120.00090 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.45891 * 305.85432 * 23 9 8 43 43 H 1.09004 * 109.46379 * 65.82117 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9183 1.5165 -1.2304 5 6 3.3049 0.0443 -1.5437 6 6 1.9989 -0.7077 -1.1849 7 1 1.2890 -0.6503 -2.0101 8 6 2.2994 -2.1683 -0.8427 9 7 2.7041 -2.8832 -2.0605 10 6 1.5590 -3.0854 -2.9573 11 6 2.0419 -3.6999 -4.2730 12 6 2.7299 -5.0369 -3.9840 13 6 3.8886 -4.8058 -3.0101 14 1 4.6246 -4.1464 -3.4700 15 6 4.5352 -6.1248 -2.6740 16 1 4.5613 -6.4682 -1.6504 17 6 5.0937 -6.8933 -3.6734 18 7 5.0615 -6.4754 -4.9200 19 14 5.8958 -8.5280 -3.2568 20 1 4.8925 -9.4266 -2.6314 21 1 6.4166 -9.1545 -4.4983 22 1 7.0167 -8.3021 -2.3092 23 6 3.3521 -4.1592 -1.7310 24 1 -0.3633 0.5136 -0.8902 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5140 0.8898 27 1 1.1755 2.0892 -0.0690 28 1 2.5672 1.5551 0.9119 29 1 2.3784 1.9591 -2.0674 30 1 3.8018 2.1058 -0.9854 31 1 4.1302 -0.2833 -0.9117 32 1 3.5500 -0.0803 -2.5983 33 1 3.1061 -2.2116 -0.1110 34 1 1.4065 -2.6352 -0.4271 35 1 0.8416 -3.7564 -2.4848 36 1 1.0813 -2.1264 -3.1581 37 1 2.7489 -3.0231 -4.7529 38 1 1.1901 -3.8641 -4.9329 39 1 3.1138 -5.4575 -4.9135 40 1 2.0127 -5.7271 -3.5397 41 1 5.4547 -7.0158 -5.6230 42 1 4.1768 -3.9801 -1.0411 43 1 2.6264 -4.8252 -1.2642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:04 Heat of formation + Delta-G solvation = -21.236573 kcal Electronic energy + Delta-G solvation = -19567.043907 eV Core-core repulsion = 16838.508716 eV Total energy + Delta-G solvation = -2728.535191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49881 -39.19721 -35.62612 -33.66715 -32.86424 -31.74458 -30.39561 -26.91794 -26.76588 -25.84983 -23.44242 -23.20801 -21.87051 -20.71505 -20.32224 -18.43008 -17.30131 -16.73944 -16.31937 -16.08432 -15.63852 -15.36239 -14.95051 -14.72660 -14.41697 -14.17781 -14.08225 -13.94241 -13.39944 -13.37639 -12.85160 -12.80121 -12.58889 -12.57061 -12.34892 -12.07816 -11.96751 -11.86557 -11.70700 -11.67003 -11.45679 -11.34012 -10.82240 -10.65739 -10.36314 -9.31241 -9.07416 -8.06701 -6.20777 1.42401 1.43681 1.51301 2.43453 2.76184 3.20193 3.43894 3.72022 3.81422 4.06521 4.17518 4.21516 4.26548 4.38465 4.42622 4.53233 4.56718 4.58260 4.62526 4.70364 4.80386 4.85438 4.90411 4.93188 4.99089 5.01045 5.05164 5.11861 5.15743 5.18855 5.27296 5.39202 5.41345 5.52864 5.64383 5.97444 6.02469 6.12364 6.17787 6.23250 6.39354 6.47678 6.91432 7.46895 8.97780 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038081 B = 0.004648 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.089736 B = 6022.196810 C = 6137.389266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.044 3.956 4 C -0.138 4.138 5 C -0.112 4.112 6 C 0.085 3.915 7 H 0.054 0.946 8 C 0.078 3.922 9 N -0.541 5.541 10 C 0.068 3.932 11 C -0.109 4.109 12 C -0.103 4.103 13 C 0.054 3.946 14 H -0.002 1.002 15 C -0.538 4.538 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.085 3.915 24 H 0.031 0.969 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.260 0.740 42 H 0.055 0.945 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.664 14.775 6.969 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.083 4.083 4 C -0.176 4.176 5 C -0.151 4.151 6 C -0.024 4.024 7 H 0.071 0.929 8 C -0.050 4.050 9 N -0.266 5.266 10 C -0.060 4.060 11 C -0.147 4.147 12 C -0.142 4.142 13 C 0.036 3.964 14 H 0.016 0.984 15 C -0.577 4.577 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.043 4.043 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -8.132 14.770 7.015 18.261 hybrid contribution -0.260 -1.346 -0.320 1.408 sum -8.392 13.423 6.696 17.189 Atomic orbital electron populations 1.22545 0.86859 1.01959 1.01218 1.63285 1.08716 1.14977 1.40361 1.22841 0.98303 0.88413 0.98765 1.22840 1.00344 0.96455 0.97981 1.22591 0.96509 0.94477 1.01475 1.22394 0.96323 0.92947 0.90692 0.92858 1.21874 0.98842 0.93293 0.90982 1.61831 1.28027 1.21216 1.15501 1.22035 0.91090 0.99519 0.93356 1.21573 0.99573 0.97021 0.96525 1.21459 0.96431 0.95077 1.01200 1.18569 0.93031 0.93376 0.91468 0.98389 1.21498 1.37159 1.05394 0.93631 0.93186 1.25700 0.96481 1.01232 0.94908 1.70025 1.45794 1.39222 1.00376 0.85688 0.78936 0.79966 0.77509 1.19751 1.20853 1.19686 1.21962 0.96225 0.88041 0.98089 0.95061 0.92147 0.90105 0.91471 0.90305 0.91089 0.89583 0.91848 0.91377 0.91491 0.95603 0.95965 0.89828 0.92955 0.91299 0.92336 0.96070 0.93059 0.92695 0.97016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.12 127.69 1.16 1.58 16 2 N -0.55 -12.41 5.10 -886.62 -4.52 -16.93 16 3 C 0.04 0.81 6.89 86.65 0.60 1.41 16 4 C -0.14 -2.57 6.97 31.87 0.22 -2.35 16 5 C -0.11 -2.81 6.39 32.08 0.20 -2.60 16 6 C 0.08 2.19 2.49 45.39 0.11 2.30 16 7 H 0.05 1.39 6.11 -2.39 -0.01 1.38 16 8 C 0.08 2.43 4.74 86.30 0.41 2.84 16 9 N -0.54 -19.87 4.49 -896.36 -4.03 -23.90 16 10 C 0.07 2.32 5.31 86.33 0.46 2.78 16 11 C -0.11 -4.24 6.09 30.64 0.19 -4.06 16 12 C -0.10 -5.05 5.03 30.67 0.15 -4.90 16 13 C 0.05 2.83 2.26 -11.49 -0.03 2.80 16 14 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 15 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 16 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 17 C 0.02 0.88 5.31 84.66 0.45 1.33 16 18 N -0.91 -53.72 11.36 21.45 0.24 -53.48 16 19 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.08 3.71 4.67 86.33 0.40 4.11 16 24 H 0.03 0.54 8.10 -2.38 -0.02 0.52 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.02 7.58 -2.38 -0.02 1.00 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.72 7.98 -2.39 -0.02 1.70 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.17 7.76 -2.39 -0.02 2.15 16 34 H 0.03 0.80 8.06 -2.39 -0.02 0.78 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 2.43 6.40 -2.38 -0.02 2.41 16 37 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 3.22 6.16 -2.38 -0.01 3.20 16 40 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 42 H 0.05 2.41 7.96 -2.39 -0.02 2.39 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -60.73 325.50 -0.79 -61.51 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.94 Total: 11.49 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.55 Total: -24.98 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -8.30 Total: -94.30 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -60.73 -0.79 -61.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.275 kcal (2) G-P(sol) polarization free energy of solvation -60.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds