Wall clock time and date at job start Mon Mar 30 2020 04:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47903 * 111.00399 * 2 1 4 4 C 1.53992 * 107.05981 * 214.15421 * 3 2 1 5 5 C 1.54597 * 105.13954 * 1.22447 * 4 3 2 6 6 C 1.48531 * 111.00124 * 242.60032 * 2 1 3 7 7 H 1.09003 * 110.66535 * 41.28663 * 6 2 1 8 8 C 1.52996 * 110.66981 * 278.15787 * 6 2 1 9 9 N 1.46908 * 109.47184 * 62.33827 * 8 6 2 10 10 C 1.46841 * 110.99830 * 53.50735 * 9 8 6 11 11 C 1.53032 * 109.52439 * 185.84098 * 10 9 8 12 12 C 1.53124 * 109.28117 * 300.82220 * 11 10 9 13 13 C 1.53116 * 109.15556 * 57.65042 * 12 11 10 14 14 H 1.08999 * 109.53844 * 62.31448 * 13 12 11 15 15 C 1.50700 * 109.50069 * 182.40741 * 13 12 11 16 16 H 1.08006 * 120.00213 * 119.80735 * 15 13 12 17 17 C 1.37877 * 120.00254 * 299.80460 * 15 13 12 18 18 N 1.31514 * 119.99719 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00242 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47128 * 60.00096 * 19 17 15 21 21 H 1.48508 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47068 * 299.99771 * 19 17 15 23 23 C 1.46843 * 111.00255 * 177.71951 * 9 8 6 24 24 H 1.09001 * 109.46771 * 66.71342 * 1 2 3 25 25 H 1.09000 * 109.46919 * 186.71494 * 1 2 3 26 26 H 1.09003 * 109.47017 * 306.71339 * 1 2 3 27 27 H 1.09003 * 109.91311 * 333.50774 * 3 2 1 28 28 H 1.08999 * 109.91343 * 94.60105 * 3 2 1 29 29 H 1.08998 * 110.31044 * 120.13659 * 4 3 2 30 30 H 1.09001 * 110.30658 * 242.30876 * 4 3 2 31 31 H 1.08997 * 110.72727 * 140.31511 * 5 4 3 32 32 H 1.09004 * 110.72341 * 263.42492 * 5 4 3 33 33 H 1.08995 * 109.47278 * 182.33563 * 8 6 2 34 34 H 1.08996 * 109.47366 * 302.34123 * 8 6 2 35 35 H 1.09004 * 109.46618 * 305.85830 * 10 9 8 36 36 H 1.09004 * 109.46286 * 65.82675 * 10 9 8 37 37 H 1.09001 * 109.50963 * 180.88084 * 11 10 9 38 38 H 1.08998 * 109.53655 * 60.78335 * 11 10 9 39 39 H 1.08998 * 109.52164 * 297.75311 * 12 11 10 40 40 H 1.08993 * 109.52710 * 177.55470 * 12 11 10 41 41 H 0.97004 * 120.00521 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.46356 * 294.17982 * 23 9 8 43 43 H 1.09000 * 109.46320 * 54.14463 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 3.2984 1.3658 -0.8265 5 6 3.4492 -0.0930 -1.3153 6 6 2.0013 -0.6381 -1.2311 7 1 1.4237 -0.3323 -2.1035 8 6 2.0053 -2.1617 -1.0912 9 7 0.6271 -2.6414 -0.9212 10 6 -0.2389 -2.1468 -1.9989 11 6 -1.6890 -2.5429 -1.7122 12 6 -1.7865 -4.0678 -1.6130 13 6 -0.8389 -4.5615 -0.5162 14 1 -1.1454 -4.1468 0.4441 15 6 -0.8846 -6.0664 -0.4519 16 1 0.0133 -6.6418 -0.6231 17 6 -2.0725 -6.7089 -0.1744 18 7 -3.1660 -6.0083 0.0336 19 14 -2.1293 -8.5743 -0.0954 20 1 -1.2064 -9.0532 0.9649 21 1 -3.5130 -9.0147 0.2161 22 1 -1.7139 -9.1381 -1.4049 23 6 0.5865 -4.1069 -0.8376 24 1 -0.3633 0.4063 -0.9440 25 1 -0.3633 -1.0206 0.1202 26 1 -0.3633 0.6144 0.8238 27 1 1.2759 2.0561 -0.4572 28 1 2.2090 1.6979 1.0215 29 1 3.2138 2.0428 -1.6766 30 1 4.1471 1.6453 -0.2022 31 1 3.8124 -0.1200 -2.3427 32 1 4.1140 -0.6533 -0.6579 33 1 2.4372 -2.6077 -1.9871 34 1 2.5985 -2.4453 -0.2219 35 1 -0.1636 -1.0608 -2.0560 36 1 0.0760 -2.5828 -2.9470 37 1 -2.3296 -2.1892 -2.5201 38 1 -2.0098 -2.0958 -0.7713 39 1 -1.5036 -4.5136 -2.5665 40 1 -2.8092 -4.3522 -1.3659 41 1 -4.0019 -6.4603 0.2284 42 1 0.8977 -4.5338 -1.7911 43 1 1.2615 -4.4446 -0.0512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:08 Heat of formation + Delta-G solvation = 5.927924 kcal Electronic energy + Delta-G solvation = -19929.835088 eV Core-core repulsion = 17202.477838 eV Total energy + Delta-G solvation = -2727.357250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.53126 -37.54440 -33.76383 -32.17783 -31.75053 -30.03316 -29.04300 -25.73264 -24.88555 -24.38152 -21.90618 -21.66207 -20.79422 -19.46447 -18.59448 -16.42192 -16.02537 -15.37502 -15.09183 -14.55065 -14.41857 -13.83557 -13.56174 -13.32112 -12.94791 -12.71621 -12.47147 -12.23687 -12.05861 -11.75161 -11.39254 -11.25958 -11.07120 -10.95527 -10.89525 -10.78765 -10.64810 -10.56243 -10.47042 -10.02262 -9.78125 -9.41786 -8.98415 -8.66812 -8.27566 -8.13140 -7.51278 -5.93352 -3.99214 3.34966 3.39505 3.42084 4.14155 4.38439 4.52695 4.71778 4.85237 4.94748 5.20122 5.36407 5.40492 5.51655 5.62236 5.65877 5.69476 5.76309 5.82363 5.84694 5.89751 5.94442 6.00537 6.13017 6.14515 6.28282 6.34184 6.45604 6.57626 6.64571 6.74002 6.80439 7.02514 7.15252 7.25477 7.32004 7.45203 7.73021 7.79935 7.90009 8.13983 8.21960 8.53164 9.04660 9.64776 11.12606 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042668 B = 0.005003 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.068782 B = 5595.227470 C = 5844.194317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.502 5.502 3 C 0.031 3.969 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.066 3.934 7 H 0.052 0.948 8 C 0.071 3.929 9 N -0.529 5.529 10 C 0.051 3.949 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.056 3.944 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.052 0.948 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.068 3.932 24 H 0.017 0.983 25 H 0.113 0.887 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.259 0.741 42 H 0.016 0.984 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 13.284 -3.309 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.226 5.226 3 C -0.097 4.097 4 C -0.168 4.168 5 C -0.158 4.158 6 C -0.043 4.043 7 H 0.069 0.931 8 C -0.058 4.058 9 N -0.253 5.253 10 C -0.077 4.077 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.053 0.947 15 C -0.553 4.553 16 H 0.070 0.930 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.059 4.059 24 H 0.036 0.964 25 H 0.131 0.869 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.920 13.155 -2.349 16.067 hybrid contribution -0.095 -0.830 -1.523 1.737 sum 8.826 12.325 -3.873 15.646 Atomic orbital electron populations 1.22948 0.86988 1.05512 0.98501 1.64626 1.09045 1.12770 1.36130 1.22898 0.95508 0.91102 1.00206 1.22366 0.97979 0.97039 0.99381 1.22497 0.96622 0.95613 1.01081 1.22898 0.94533 0.95171 0.91693 0.93059 1.22010 0.91379 0.92384 1.00013 1.62069 1.06916 1.12134 1.44189 1.22273 0.94853 0.98631 0.91919 1.21690 0.93581 0.99967 1.00236 1.21643 1.04442 0.90304 0.98386 1.18642 0.87959 0.94526 0.95146 0.94747 1.21124 0.94727 0.91469 1.47984 0.92971 1.24921 0.95756 0.97908 0.95193 1.69881 0.99594 1.34926 1.48369 0.86703 0.76935 0.86151 0.78438 1.20306 1.21351 1.20452 1.22301 1.01414 0.83778 0.98407 0.96447 0.86927 0.92850 0.94418 0.90707 0.91936 0.91197 0.91424 0.90544 0.95448 0.90309 0.91979 0.96306 0.93804 0.92085 0.95300 0.89197 0.93063 0.96528 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 7.95 60.07 0.48 0.60 16 2 N -0.50 -7.13 5.24 -230.83 -1.21 -8.34 16 3 C 0.03 0.36 6.68 -2.75 -0.02 0.34 16 4 C -0.13 -1.27 6.93 -25.37 -0.18 -1.45 16 5 C -0.12 -1.30 6.50 -24.87 -0.16 -1.46 16 6 C 0.07 0.89 2.28 -65.79 -0.15 0.74 16 7 H 0.05 0.72 6.12 -51.93 -0.32 0.40 16 8 C 0.07 1.10 4.83 -3.82 -0.02 1.08 16 9 N -0.53 -9.73 2.98 -234.68 -0.70 -10.43 16 10 C 0.05 0.90 3.97 -3.84 -0.02 0.88 16 11 C -0.12 -2.28 6.01 -26.65 -0.16 -2.44 16 12 C -0.11 -2.60 5.03 -26.61 -0.13 -2.74 16 13 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.19 8.56 -34.44 -0.29 -14.49 16 16 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.47 11.36 55.43 0.63 -24.84 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.07 1.46 4.69 -3.84 -0.02 1.44 16 24 H 0.02 0.24 6.78 -51.93 -0.35 -0.11 16 25 H 0.11 1.96 4.69 -51.93 -0.24 1.72 16 26 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 27 H 0.04 0.42 7.77 -51.93 -0.40 0.01 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.98 3.73 -51.93 -0.19 0.79 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.21 7.40 -51.93 -0.38 0.83 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -27.96 313.99 -10.21 -38.17 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.67 Total: -1.05 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.97 Total: -14.61 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -1.28 Total: -43.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.96 -10.21 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.094 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds