Wall clock time and date at job start Mon Mar 30 2020 04:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47903 * 111.00399 * 2 1 4 4 C 1.53992 * 107.05981 * 214.15421 * 3 2 1 5 5 C 1.54597 * 105.13954 * 1.22447 * 4 3 2 6 6 C 1.48531 * 111.00124 * 242.60032 * 2 1 3 7 7 H 1.09003 * 110.66535 * 41.28663 * 6 2 1 8 8 C 1.52996 * 110.66981 * 278.15787 * 6 2 1 9 9 N 1.46908 * 109.47184 * 62.33827 * 8 6 2 10 10 C 1.46841 * 110.99830 * 53.50735 * 9 8 6 11 11 C 1.53032 * 109.52439 * 185.84098 * 10 9 8 12 12 C 1.53124 * 109.28117 * 300.82220 * 11 10 9 13 13 C 1.53116 * 109.15556 * 57.65042 * 12 11 10 14 14 H 1.08999 * 109.53844 * 62.31448 * 13 12 11 15 15 C 1.50700 * 109.50069 * 182.40741 * 13 12 11 16 16 H 1.08006 * 120.00213 * 119.80735 * 15 13 12 17 17 C 1.37877 * 120.00254 * 299.80460 * 15 13 12 18 18 N 1.31514 * 119.99719 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00242 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47128 * 60.00096 * 19 17 15 21 21 H 1.48508 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47068 * 299.99771 * 19 17 15 23 23 C 1.46843 * 111.00255 * 177.71951 * 9 8 6 24 24 H 1.09001 * 109.46771 * 66.71342 * 1 2 3 25 25 H 1.09000 * 109.46919 * 186.71494 * 1 2 3 26 26 H 1.09003 * 109.47017 * 306.71339 * 1 2 3 27 27 H 1.09003 * 109.91311 * 333.50774 * 3 2 1 28 28 H 1.08999 * 109.91343 * 94.60105 * 3 2 1 29 29 H 1.08998 * 110.31044 * 120.13659 * 4 3 2 30 30 H 1.09001 * 110.30658 * 242.30876 * 4 3 2 31 31 H 1.08997 * 110.72727 * 140.31511 * 5 4 3 32 32 H 1.09004 * 110.72341 * 263.42492 * 5 4 3 33 33 H 1.08995 * 109.47278 * 182.33563 * 8 6 2 34 34 H 1.08996 * 109.47366 * 302.34123 * 8 6 2 35 35 H 1.09004 * 109.46618 * 305.85830 * 10 9 8 36 36 H 1.09004 * 109.46286 * 65.82675 * 10 9 8 37 37 H 1.09001 * 109.50963 * 180.88084 * 11 10 9 38 38 H 1.08998 * 109.53655 * 60.78335 * 11 10 9 39 39 H 1.08998 * 109.52164 * 297.75311 * 12 11 10 40 40 H 1.08993 * 109.52710 * 177.55470 * 12 11 10 41 41 H 0.97004 * 120.00521 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.46356 * 294.17982 * 23 9 8 43 43 H 1.09000 * 109.46320 * 54.14463 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3808 0.0000 4 6 3.2984 1.3658 -0.8265 5 6 3.4492 -0.0930 -1.3153 6 6 2.0013 -0.6381 -1.2311 7 1 1.4237 -0.3323 -2.1035 8 6 2.0053 -2.1617 -1.0912 9 7 0.6271 -2.6414 -0.9212 10 6 -0.2389 -2.1468 -1.9989 11 6 -1.6890 -2.5429 -1.7122 12 6 -1.7865 -4.0678 -1.6130 13 6 -0.8389 -4.5615 -0.5162 14 1 -1.1454 -4.1468 0.4441 15 6 -0.8846 -6.0664 -0.4519 16 1 0.0133 -6.6418 -0.6231 17 6 -2.0725 -6.7089 -0.1744 18 7 -3.1660 -6.0083 0.0336 19 14 -2.1293 -8.5743 -0.0954 20 1 -1.2064 -9.0532 0.9649 21 1 -3.5130 -9.0147 0.2161 22 1 -1.7139 -9.1381 -1.4049 23 6 0.5865 -4.1069 -0.8376 24 1 -0.3633 0.4063 -0.9440 25 1 -0.3633 -1.0206 0.1202 26 1 -0.3633 0.6144 0.8238 27 1 1.2759 2.0561 -0.4572 28 1 2.2090 1.6979 1.0215 29 1 3.2138 2.0428 -1.6766 30 1 4.1471 1.6453 -0.2022 31 1 3.8124 -0.1200 -2.3427 32 1 4.1140 -0.6533 -0.6579 33 1 2.4372 -2.6077 -1.9871 34 1 2.5985 -2.4453 -0.2219 35 1 -0.1636 -1.0608 -2.0560 36 1 0.0760 -2.5828 -2.9470 37 1 -2.3296 -2.1892 -2.5201 38 1 -2.0098 -2.0958 -0.7713 39 1 -1.5036 -4.5136 -2.5665 40 1 -2.8092 -4.3522 -1.3659 41 1 -4.0019 -6.4603 0.2284 42 1 0.8977 -4.5338 -1.7911 43 1 1.2615 -4.4446 -0.0512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:07 Heat of formation + Delta-G solvation = -10.981919 kcal Electronic energy + Delta-G solvation = -19930.568354 eV Core-core repulsion = 17202.477838 eV Total energy + Delta-G solvation = -2728.090516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74666 -38.96881 -35.57553 -33.66815 -33.01483 -31.73216 -30.36384 -27.06392 -26.67247 -25.64589 -23.44985 -23.30558 -21.67448 -20.73929 -20.31487 -18.40263 -17.18214 -16.81362 -16.36928 -16.26566 -15.64249 -15.27982 -14.95352 -14.67491 -14.50522 -14.28442 -14.04349 -13.58524 -13.34564 -13.16197 -12.84177 -12.74184 -12.59426 -12.48933 -12.24229 -12.08832 -12.03860 -11.81817 -11.74311 -11.64212 -11.38236 -11.32017 -10.79809 -10.64853 -10.35890 -9.24170 -8.96822 -8.06412 -6.20506 1.42058 1.43420 1.50972 2.43845 3.04718 3.18847 3.20456 3.81356 3.82681 4.08377 4.16763 4.20145 4.26643 4.35006 4.44491 4.58171 4.59897 4.62603 4.67073 4.74459 4.77068 4.81485 4.90922 4.97672 4.99936 5.05444 5.07912 5.11564 5.20251 5.24337 5.33172 5.37495 5.49683 5.54679 5.64567 5.98433 6.11769 6.14770 6.22284 6.26995 6.42293 6.48706 6.91929 7.47148 8.97974 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.042668 B = 0.005003 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.068782 B = 5595.227470 C = 5844.194317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.029 3.971 4 C -0.123 4.123 5 C -0.115 4.115 6 C 0.067 3.933 7 H 0.052 0.948 8 C 0.072 3.928 9 N -0.535 5.535 10 C 0.060 3.940 11 C -0.109 4.109 12 C -0.102 4.102 13 C 0.055 3.945 14 H -0.004 1.004 15 C -0.538 4.538 16 H 0.050 0.950 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.082 3.918 24 H 0.025 0.975 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.020 0.980 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.013 0.987 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.574 14.480 -4.230 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.099 4.099 4 C -0.161 4.161 5 C -0.154 4.154 6 C -0.042 4.042 7 H 0.070 0.930 8 C -0.056 4.056 9 N -0.259 5.259 10 C -0.067 4.067 11 C -0.147 4.147 12 C -0.140 4.140 13 C 0.037 3.963 14 H 0.014 0.986 15 C -0.576 4.576 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.045 4.045 24 H 0.043 0.957 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.361 14.366 -3.273 18.012 hybrid contribution -0.543 -1.176 -1.191 1.759 sum 9.819 13.190 -4.464 17.038 Atomic orbital electron populations 1.22783 0.87728 1.03739 0.99145 1.64573 1.08557 1.14782 1.36689 1.22959 0.96448 0.89514 1.00941 1.22363 0.97404 0.96505 0.99826 1.22496 0.94548 0.96089 1.02244 1.22873 0.96513 0.93367 0.91403 0.93016 1.22068 0.89309 0.94204 1.00055 1.62008 1.09044 1.09831 1.45012 1.22209 0.93110 0.99987 0.91407 1.21589 0.95749 0.96556 1.00793 1.21440 1.01975 0.93472 0.97128 1.18547 0.90576 0.93461 0.93748 0.98581 1.21505 0.94843 0.93026 1.48262 0.93204 1.25701 0.95388 1.02469 0.94798 1.70028 0.99982 1.36608 1.48812 0.85690 0.77066 0.80666 0.78678 1.19712 1.20891 1.19725 1.21959 0.98663 0.86096 0.97808 0.95707 0.89883 0.92270 0.93859 0.90446 0.90414 0.89859 0.89704 0.90728 0.94643 0.90972 0.89469 0.96236 0.91571 0.92842 0.96133 0.92432 0.93093 0.96921 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.41 7.95 127.69 1.02 1.42 16 2 N -0.52 -13.87 5.24 -884.23 -4.64 -18.51 16 3 C 0.03 0.59 6.68 86.45 0.58 1.17 16 4 C -0.12 -1.97 6.93 31.47 0.22 -1.76 16 5 C -0.12 -2.15 6.50 31.80 0.21 -1.94 16 6 C 0.07 1.66 2.28 45.26 0.10 1.76 16 7 H 0.05 1.29 6.12 -2.39 -0.01 1.27 16 8 C 0.07 2.14 4.83 86.30 0.42 2.56 16 9 N -0.53 -19.51 2.98 -896.38 -2.67 -22.18 16 10 C 0.06 2.05 3.97 86.33 0.34 2.39 16 11 C -0.11 -4.23 6.01 30.65 0.18 -4.05 16 12 C -0.10 -4.97 5.03 30.67 0.15 -4.82 16 13 C 0.06 2.89 2.26 -11.49 -0.03 2.86 16 14 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 15 C -0.54 -30.49 8.56 25.60 0.22 -30.27 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.02 0.86 5.30 84.65 0.45 1.31 16 18 N -0.92 -53.92 11.36 21.45 0.24 -53.67 16 19 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.08 3.60 4.69 86.33 0.40 4.00 16 24 H 0.02 0.64 6.78 -2.39 -0.02 0.63 16 25 H 0.08 2.88 4.69 -2.39 -0.01 2.86 16 26 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 27 H 0.04 0.83 7.77 -2.39 -0.02 0.82 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.57 3.73 -2.38 -0.01 2.56 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 2.15 7.40 -2.39 -0.02 2.13 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 3.17 6.16 -2.39 -0.01 3.16 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.05 2.34 8.12 -2.39 -0.02 2.32 16 Total: -1.00 -61.34 313.99 0.18 -61.16 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.95 Total: 12.16 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.26 Total: -25.35 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -7.07 Total: -94.37 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.34 0.18 -61.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.176 kcal (2) G-P(sol) polarization free energy of solvation -61.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds