Wall clock time and date at job start Mon Mar 30 2020 03:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46846 * 110.99995 * 2 1 4 4 C 1.53033 * 109.52547 * 174.15622 * 3 2 1 5 5 C 1.53124 * 109.27606 * 59.17989 * 4 3 2 6 6 C 1.52999 * 109.52144 * 182.44178 * 5 4 3 7 7 N 1.46896 * 109.47013 * 185.00512 * 6 5 4 8 8 C 1.47446 * 110.99814 * 75.60629 * 7 6 5 9 9 C 1.54322 * 107.23529 * 123.25958 * 8 7 6 10 10 C 1.55139 * 103.01973 * 22.28139 * 9 8 7 11 11 H 1.08991 * 110.99310 * 82.43787 * 10 9 8 12 12 C 1.50696 * 110.99040 * 206.21966 * 10 9 8 13 13 H 1.08005 * 120.00239 * 118.54120 * 12 10 9 14 14 C 1.37879 * 120.00413 * 298.54711 * 12 10 9 15 15 N 1.31517 * 119.99577 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00306 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47409 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47167 * 120.00090 * 16 14 12 19 19 H 1.48507 * 109.47018 * 239.99838 * 16 14 12 20 20 C 1.47847 * 111.00284 * 196.44542 * 7 6 5 21 21 C 1.53122 * 109.16153 * 302.34637 * 5 4 3 22 22 C 1.46849 * 111.00398 * 235.78741 * 2 1 3 23 23 H 1.09002 * 109.47280 * 184.20478 * 1 2 3 24 24 H 1.08999 * 109.47733 * 304.20867 * 1 2 3 25 25 H 1.09002 * 109.47107 * 64.21419 * 1 2 3 26 26 H 1.08997 * 109.46309 * 294.17381 * 3 2 1 27 27 H 1.09008 * 109.46208 * 54.14088 * 3 2 1 28 28 H 1.09000 * 109.50578 * 299.24280 * 4 3 2 29 29 H 1.09000 * 109.50766 * 179.12133 * 4 3 2 30 30 H 1.08993 * 109.57580 * 62.28488 * 5 4 3 31 31 H 1.09006 * 109.47452 * 305.00414 * 6 5 4 32 32 H 1.09001 * 109.47194 * 65.00587 * 6 5 4 33 33 H 1.09005 * 109.88671 * 242.66315 * 8 7 6 34 34 H 1.08998 * 109.89202 * 3.68497 * 8 7 6 35 35 H 1.09002 * 110.70562 * 140.66593 * 9 8 7 36 36 H 1.09004 * 110.70113 * 263.72350 * 9 8 7 37 37 H 0.96992 * 120.00078 * 179.97438 * 15 14 12 38 38 H 1.09007 * 110.37078 * 332.46921 * 20 7 6 39 39 H 1.08994 * 110.37682 * 94.80866 * 20 7 6 40 40 H 1.09005 * 109.49861 * 297.71404 * 21 5 4 41 41 H 1.08997 * 109.50261 * 177.59819 * 21 5 4 42 42 H 1.08998 * 109.45924 * 305.86211 * 22 2 1 43 43 H 1.09007 * 109.45516 * 65.82268 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1469 5 6 4.1188 0.5370 -1.0143 6 6 5.6361 0.4450 -0.8403 7 7 6.2243 -0.2151 -2.0134 8 6 6.2645 0.6994 -3.1693 9 6 7.7342 0.7871 -3.6320 10 6 8.3554 -0.5196 -3.0723 11 1 8.1531 -1.3624 -3.7331 12 6 9.8364 -0.3590 -2.8449 13 1 10.2447 -0.4640 -1.8505 14 6 10.6704 -0.0779 -3.9063 15 7 10.1734 0.0496 -5.1172 16 14 12.5063 0.1205 -3.6245 17 1 12.8094 -0.0701 -2.1834 18 1 13.2420 -0.8920 -4.4237 19 1 12.9269 1.4821 -4.0425 20 6 7.6004 -0.6744 -1.7285 21 6 3.5181 -0.8715 -1.0208 22 6 1.9953 -0.7708 -1.1337 23 1 -0.3634 -1.0249 0.0754 24 1 -0.3634 0.5777 0.8498 25 1 -0.3633 0.4471 -0.9254 26 1 1.7325 1.8608 -0.9376 27 1 1.5633 1.9258 0.8330 28 1 3.7813 0.8568 1.0907 29 1 3.9099 2.3513 0.1311 30 1 3.8897 1.0350 -1.9563 31 1 6.0520 1.4477 -0.7410 32 1 5.8648 -0.1335 0.0548 33 1 5.6450 0.3058 -3.9752 34 1 5.9065 1.6858 -2.8746 35 1 7.7951 0.8076 -4.7201 36 1 8.2214 1.6631 -3.2035 37 1 10.7600 0.2478 -5.8638 38 1 8.0581 -0.0491 -0.9618 39 1 7.5947 -1.7182 -1.4145 40 1 3.7814 -1.3836 -0.0952 41 1 3.9100 -1.4303 -1.8706 42 1 1.5634 -1.7715 -1.1242 43 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259645925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:27 Heat of formation + Delta-G solvation = -9.213328 kcal Electronic energy + Delta-G solvation = -19222.201396 eV Core-core repulsion = 16494.187572 eV Total energy + Delta-G solvation = -2728.013824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.28921 -37.78117 -34.46109 -32.67800 -30.82073 -30.13261 -28.18329 -27.24488 -24.77710 -23.68102 -23.04303 -21.59602 -19.96466 -19.63892 -19.05229 -16.40304 -15.81132 -15.22902 -15.06139 -14.84911 -14.61718 -14.34724 -13.92096 -13.37469 -13.10855 -12.58792 -12.41420 -12.36360 -12.19809 -12.09810 -11.63610 -11.51003 -11.13692 -11.08211 -10.89849 -10.82385 -10.55152 -10.33087 -10.31768 -10.13580 -9.92977 -9.56930 -9.18446 -8.81134 -8.42741 -8.38865 -7.53913 -6.01721 -4.04948 3.29142 3.37281 3.41201 3.86222 4.41716 4.61894 4.84587 4.90258 4.99441 5.16786 5.27318 5.31634 5.35739 5.46196 5.50905 5.58083 5.66938 5.74864 5.78160 5.84120 5.85434 6.00309 6.09538 6.14590 6.19832 6.25020 6.33440 6.48299 6.55883 6.58023 6.63804 6.88128 6.98809 7.02855 7.17239 7.22478 7.66892 7.75579 7.81948 7.93194 8.03737 8.44024 8.97421 9.59332 11.07877 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.059374 B = 0.003893 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.470554 B = 7191.442394 C = 7262.400334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.081 4.081 6 C 0.059 3.941 7 N -0.532 5.532 8 C 0.039 3.961 9 C -0.116 4.116 10 C 0.048 3.952 11 H 0.036 0.964 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.047 3.953 21 C -0.100 4.100 22 C 0.054 3.946 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.259 0.741 38 H 0.034 0.966 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 1.910 8.249 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.070 4.070 4 C -0.151 4.151 5 C -0.100 4.100 6 C -0.070 4.070 7 N -0.256 5.256 8 C -0.088 4.088 9 C -0.155 4.155 10 C 0.029 3.971 11 H 0.054 0.946 12 C -0.552 4.552 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.080 4.080 21 C -0.138 4.138 22 C -0.073 4.073 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.433 1.290 8.381 18.492 hybrid contribution 1.190 1.356 -0.511 1.875 sum -15.242 2.645 7.871 17.357 Atomic orbital electron populations 1.22340 0.87810 1.02032 1.00146 1.61952 1.07093 1.13877 1.44010 1.22064 0.95920 0.88976 1.00012 1.21634 0.93789 1.00109 0.99572 1.21164 0.94789 0.96187 0.97841 1.22229 0.93611 0.96946 0.94210 1.63545 1.21426 1.36409 1.04199 1.22917 0.99383 0.93263 0.93260 1.22669 0.91049 1.00113 1.01687 1.19725 0.93600 0.93623 0.90130 0.94599 1.21096 0.91599 1.48489 0.94058 0.92589 1.24972 0.98545 0.95187 0.95184 1.69976 1.34917 1.48706 0.99051 0.86563 0.85686 0.77627 0.78283 1.19790 1.21003 1.21115 1.23154 0.86275 0.98395 1.00188 1.21504 0.92242 0.96936 1.03108 1.22175 0.96770 0.97603 0.90780 0.91488 0.91652 0.95955 0.95162 0.91143 0.91122 0.91788 0.91723 0.95258 0.91644 0.92232 0.94766 0.90984 0.93574 0.93130 0.94769 0.92177 0.91668 0.90023 0.91084 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.59 60.06 0.58 0.80 16 2 N -0.54 -6.08 4.91 -242.96 -1.19 -7.27 16 3 C 0.06 0.62 5.46 -3.84 -0.02 0.60 16 4 C -0.11 -1.30 5.38 -26.65 -0.14 -1.44 16 5 C -0.08 -1.08 2.30 -90.49 -0.21 -1.29 16 6 C 0.06 0.93 3.98 -3.83 -0.02 0.92 16 7 N -0.53 -10.02 4.64 -231.24 -1.07 -11.09 16 8 C 0.04 0.77 6.23 -2.83 -0.02 0.76 16 9 C -0.12 -2.75 5.64 -24.91 -0.14 -2.89 16 10 C 0.05 1.22 2.96 -89.63 -0.26 0.95 16 11 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.51 -14.17 8.55 -34.44 -0.29 -14.47 16 13 H 0.06 1.53 7.79 -52.48 -0.41 1.12 16 14 C 0.06 1.75 5.34 -17.82 -0.10 1.65 16 15 N -0.89 -25.54 12.12 55.43 0.67 -24.86 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.05 1.00 6.08 -2.30 -0.01 0.99 16 21 C -0.10 -1.31 5.24 -26.65 -0.14 -1.45 16 22 C 0.05 0.63 5.46 -3.84 -0.02 0.61 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.66 8.09 -51.92 -0.42 0.24 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.93 7.47 -51.93 -0.39 0.54 16 31 H 0.03 0.48 7.78 -51.93 -0.40 0.08 16 32 H 0.07 1.01 7.99 -51.93 -0.42 0.60 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.62 7.19 -51.93 -0.37 0.25 16 35 H 0.07 1.83 7.54 -51.93 -0.39 1.44 16 36 H 0.05 1.13 8.04 -51.93 -0.42 0.72 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.03 0.74 7.70 -51.92 -0.40 0.34 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.18 7.84 -51.93 -0.41 0.78 16 42 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -28.08 328.10 -10.70 -38.78 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.23 Total: -2.53 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.80 Total: -14.26 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -1.59 Total: -43.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.08 -10.70 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.563 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds