Wall clock time and date at job start Mon Mar 30 2020 03:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46846 * 110.99995 * 2 1 4 4 C 1.53033 * 109.52547 * 174.15622 * 3 2 1 5 5 C 1.53124 * 109.27606 * 59.17989 * 4 3 2 6 6 C 1.52999 * 109.52144 * 182.44178 * 5 4 3 7 7 N 1.46896 * 109.47013 * 185.00512 * 6 5 4 8 8 C 1.47446 * 110.99814 * 75.60629 * 7 6 5 9 9 C 1.54322 * 107.23529 * 123.25958 * 8 7 6 10 10 C 1.55139 * 103.01973 * 22.28139 * 9 8 7 11 11 H 1.08991 * 110.99310 * 82.43787 * 10 9 8 12 12 C 1.50696 * 110.99040 * 206.21966 * 10 9 8 13 13 H 1.08005 * 120.00239 * 118.54120 * 12 10 9 14 14 C 1.37879 * 120.00413 * 298.54711 * 12 10 9 15 15 N 1.31517 * 119.99577 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00306 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47409 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47167 * 120.00090 * 16 14 12 19 19 H 1.48507 * 109.47018 * 239.99838 * 16 14 12 20 20 C 1.47847 * 111.00284 * 196.44542 * 7 6 5 21 21 C 1.53122 * 109.16153 * 302.34637 * 5 4 3 22 22 C 1.46849 * 111.00398 * 235.78741 * 2 1 3 23 23 H 1.09002 * 109.47280 * 184.20478 * 1 2 3 24 24 H 1.08999 * 109.47733 * 304.20867 * 1 2 3 25 25 H 1.09002 * 109.47107 * 64.21419 * 1 2 3 26 26 H 1.08997 * 109.46309 * 294.17381 * 3 2 1 27 27 H 1.09008 * 109.46208 * 54.14088 * 3 2 1 28 28 H 1.09000 * 109.50578 * 299.24280 * 4 3 2 29 29 H 1.09000 * 109.50766 * 179.12133 * 4 3 2 30 30 H 1.08993 * 109.57580 * 62.28488 * 5 4 3 31 31 H 1.09006 * 109.47452 * 305.00414 * 6 5 4 32 32 H 1.09001 * 109.47194 * 65.00587 * 6 5 4 33 33 H 1.09005 * 109.88671 * 242.66315 * 8 7 6 34 34 H 1.08998 * 109.89202 * 3.68497 * 8 7 6 35 35 H 1.09002 * 110.70562 * 140.66593 * 9 8 7 36 36 H 1.09004 * 110.70113 * 263.72350 * 9 8 7 37 37 H 0.96992 * 120.00078 * 179.97438 * 15 14 12 38 38 H 1.09007 * 110.37078 * 332.46921 * 20 7 6 39 39 H 1.08994 * 110.37682 * 94.80866 * 20 7 6 40 40 H 1.09005 * 109.49861 * 297.71404 * 21 5 4 41 41 H 1.08997 * 109.50261 * 177.59819 * 21 5 4 42 42 H 1.08998 * 109.45924 * 305.86211 * 22 2 1 43 43 H 1.09007 * 109.45516 * 65.82268 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1469 5 6 4.1188 0.5370 -1.0143 6 6 5.6361 0.4450 -0.8403 7 7 6.2243 -0.2151 -2.0134 8 6 6.2645 0.6994 -3.1693 9 6 7.7342 0.7871 -3.6320 10 6 8.3554 -0.5196 -3.0723 11 1 8.1531 -1.3624 -3.7331 12 6 9.8364 -0.3590 -2.8449 13 1 10.2447 -0.4640 -1.8505 14 6 10.6704 -0.0779 -3.9063 15 7 10.1734 0.0496 -5.1172 16 14 12.5063 0.1205 -3.6245 17 1 12.8094 -0.0701 -2.1834 18 1 13.2420 -0.8920 -4.4237 19 1 12.9269 1.4821 -4.0425 20 6 7.6004 -0.6744 -1.7285 21 6 3.5181 -0.8715 -1.0208 22 6 1.9953 -0.7708 -1.1337 23 1 -0.3634 -1.0249 0.0754 24 1 -0.3634 0.5777 0.8498 25 1 -0.3633 0.4471 -0.9254 26 1 1.7325 1.8608 -0.9376 27 1 1.5633 1.9258 0.8330 28 1 3.7813 0.8568 1.0907 29 1 3.9099 2.3513 0.1311 30 1 3.8897 1.0350 -1.9563 31 1 6.0520 1.4477 -0.7410 32 1 5.8648 -0.1335 0.0548 33 1 5.6450 0.3058 -3.9752 34 1 5.9065 1.6858 -2.8746 35 1 7.7951 0.8076 -4.7201 36 1 8.2214 1.6631 -3.2035 37 1 10.7600 0.2478 -5.8638 38 1 8.0581 -0.0491 -0.9618 39 1 7.5947 -1.7182 -1.4145 40 1 3.7814 -1.3836 -0.0952 41 1 3.9100 -1.4303 -1.8706 42 1 1.5634 -1.7715 -1.1242 43 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:26 Heat of formation + Delta-G solvation = -26.345441 kcal Electronic energy + Delta-G solvation = -19222.944300 eV Core-core repulsion = 16494.187572 eV Total energy + Delta-G solvation = -2728.756728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42702 -39.22313 -35.80525 -34.46047 -31.85678 -31.63686 -29.99170 -28.43475 -26.42786 -25.04742 -23.98927 -22.78175 -21.54912 -21.26093 -20.32289 -18.44810 -16.80477 -16.71791 -16.61088 -16.09884 -15.93309 -15.45720 -15.23310 -14.55528 -14.43680 -14.24078 -13.78087 -13.63472 -13.43404 -13.24335 -13.03115 -12.95171 -12.73998 -12.62141 -12.34126 -12.22608 -12.05770 -11.99762 -11.50350 -11.46918 -11.29130 -11.14745 -10.96105 -10.87437 -10.50966 -9.25308 -9.10934 -8.14732 -6.25492 1.39386 1.41156 1.52777 2.41449 3.05875 3.14894 3.20522 3.82459 3.92963 3.99618 4.13504 4.28309 4.33142 4.40143 4.48961 4.51716 4.55428 4.64130 4.66721 4.69156 4.72514 4.82205 4.85714 4.94125 4.96520 5.02062 5.03810 5.07498 5.14893 5.24031 5.26529 5.36226 5.44577 5.56519 5.59067 5.81217 5.91566 6.08215 6.17088 6.19835 6.36784 6.37903 6.84084 7.42488 8.94451 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.059374 B = 0.003893 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.470554 B = 7191.442394 C = 7262.400334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.059 3.941 4 C -0.108 4.108 5 C -0.074 4.074 6 C 0.059 3.941 7 N -0.530 5.530 8 C 0.052 3.948 9 C -0.108 4.108 10 C 0.038 3.962 11 H 0.003 0.997 12 C -0.534 4.534 13 H 0.054 0.946 14 C 0.013 3.987 15 N -0.917 5.917 16 Si 0.957 3.043 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.060 3.940 21 C -0.096 4.096 22 C 0.059 3.941 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 2.488 9.661 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.069 4.069 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.069 4.069 7 N -0.254 5.254 8 C -0.076 4.076 9 C -0.147 4.147 10 C 0.019 3.981 11 H 0.022 0.978 12 C -0.572 4.572 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.782 3.218 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.067 4.067 21 C -0.134 4.134 22 C -0.069 4.069 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -17.407 1.867 9.808 20.067 hybrid contribution 1.465 1.153 -0.950 2.092 sum -15.942 3.020 8.858 18.486 Atomic orbital electron populations 1.22395 0.86345 1.02794 1.00779 1.61964 1.08505 1.14050 1.43575 1.22078 0.95177 0.88985 1.00620 1.21590 0.94492 1.00124 0.98383 1.21093 0.92989 0.96747 0.98456 1.22328 0.95044 0.96541 0.92973 1.63558 1.19702 1.36855 1.05252 1.22780 0.96472 0.94570 0.93750 1.22458 0.93723 0.98619 0.99870 1.19685 0.93491 0.93135 0.91796 0.97837 1.21429 0.93075 1.48583 0.94106 0.92758 1.25775 1.03071 0.94849 0.94918 1.70100 1.36461 1.49300 0.99783 0.85523 0.80166 0.77629 0.78452 1.19024 1.20558 1.20635 1.22921 0.87140 0.98868 0.97816 1.21416 0.93501 0.96369 1.02071 1.22089 0.95572 0.98262 0.90962 0.90841 0.90430 0.95764 0.95345 0.89505 0.91169 0.90931 0.92483 0.95360 0.91077 0.91670 0.92770 0.93510 0.95060 0.93033 0.94930 0.91704 0.92067 0.91760 0.90280 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.59 127.69 1.22 1.60 16 2 N -0.56 -11.07 4.91 -922.59 -4.53 -15.60 16 3 C 0.06 1.11 5.46 86.32 0.47 1.58 16 4 C -0.11 -2.22 5.38 30.65 0.16 -2.05 16 5 C -0.07 -1.85 2.30 -10.71 -0.02 -1.88 16 6 C 0.06 1.79 3.98 86.30 0.34 2.13 16 7 N -0.53 -19.59 4.64 -885.51 -4.11 -23.70 16 8 C 0.05 2.01 6.23 86.65 0.54 2.55 16 9 C -0.11 -5.20 5.64 31.78 0.18 -5.02 16 10 C 0.04 1.97 2.96 -10.16 -0.03 1.94 16 11 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 12 C -0.53 -29.89 8.55 25.60 0.22 -29.67 16 13 H 0.05 2.98 7.79 -2.91 -0.02 2.96 16 14 C 0.01 0.73 5.34 84.65 0.45 1.18 16 15 N -0.92 -53.82 12.12 21.45 0.26 -53.56 16 16 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.06 2.57 6.08 86.77 0.53 3.09 16 21 C -0.10 -2.38 5.24 30.65 0.16 -2.22 16 22 C 0.06 1.26 5.46 86.32 0.47 1.73 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 25 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.09 1.36 8.09 -2.38 -0.02 1.34 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.54 7.47 -2.39 -0.02 1.52 16 31 H 0.03 0.87 7.78 -2.38 -0.02 0.85 16 32 H 0.07 2.08 7.99 -2.39 -0.02 2.06 16 33 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.05 1.88 7.19 -2.39 -0.02 1.87 16 35 H 0.05 2.45 7.54 -2.39 -0.02 2.44 16 36 H 0.03 1.56 8.04 -2.38 -0.02 1.54 16 37 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.03 1.39 7.70 -2.38 -0.02 1.37 16 39 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 1.81 7.84 -2.39 -0.02 1.80 16 42 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 43 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -60.05 328.10 -0.72 -60.77 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.93 Total: 11.15 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 4.70 Total: -25.04 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -8.38 Total: -92.86 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -60.05 -0.72 -60.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.425 kcal (2) G-P(sol) polarization free energy of solvation -60.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds