Wall clock time and date at job start Mon Mar 30 2020 03:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46844 * 110.99876 * 2 1 4 4 C 1.53033 * 109.52533 * 185.84291 * 3 2 1 5 5 C 1.53121 * 109.27919 * 300.81916 * 4 3 2 6 6 C 1.52993 * 109.52489 * 177.56076 * 5 4 3 7 7 N 1.46907 * 109.47301 * 175.00096 * 6 5 4 8 8 C 1.48559 * 110.99800 * 290.12819 * 7 6 5 9 9 C 1.54378 * 104.59155 * 200.95669 * 8 7 6 10 10 C 1.54264 * 105.06406 * 23.85250 * 9 8 7 11 11 H 1.08993 * 110.32526 * 241.00560 * 10 9 8 12 12 C 1.50700 * 110.32612 * 118.89179 * 10 9 8 13 13 H 1.07996 * 120.00430 * 275.22051 * 12 10 9 14 14 C 1.37879 * 119.99660 * 95.21978 * 12 10 9 15 15 N 1.31511 * 119.99836 * 174.51368 * 14 12 10 16 16 Si 1.86800 * 120.00110 * 354.79194 * 14 12 10 17 17 H 1.48506 * 109.47037 * 94.70162 * 16 14 12 18 18 H 1.48493 * 109.47213 * 214.70463 * 16 14 12 19 19 H 1.48503 * 109.46897 * 334.70459 * 16 14 12 20 20 C 1.48561 * 111.00238 * 174.70381 * 7 6 5 21 21 C 1.53121 * 109.15991 * 57.65392 * 5 4 3 22 22 C 1.46841 * 111.00502 * 124.21142 * 2 1 3 23 23 H 1.08992 * 109.47393 * 59.99918 * 1 2 3 24 24 H 1.09000 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47053 * 299.99760 * 1 2 3 26 26 H 1.08999 * 109.46407 * 65.82438 * 3 2 1 27 27 H 1.09004 * 109.45605 * 305.85385 * 3 2 1 28 28 H 1.09000 * 109.50740 * 180.88166 * 4 3 2 29 29 H 1.09001 * 109.50701 * 60.76455 * 4 3 2 30 30 H 1.09008 * 109.52121 * 297.68900 * 5 4 3 31 31 H 1.08996 * 109.47764 * 55.00289 * 6 5 4 32 32 H 1.09003 * 109.47250 * 294.99819 * 6 5 4 33 33 H 1.09000 * 110.41226 * 82.17804 * 8 7 6 34 34 H 1.09002 * 110.41182 * 319.73113 * 8 7 6 35 35 H 1.08999 * 110.32736 * 264.95139 * 9 8 7 36 36 H 1.09000 * 110.32270 * 142.74743 * 9 8 7 37 37 H 0.96994 * 120.00118 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.40709 * 40.26521 * 20 7 6 39 39 H 1.08998 * 110.41205 * 277.81884 * 20 7 6 40 40 H 1.08996 * 109.50449 * 62.28573 * 21 5 4 41 41 H 1.09001 * 109.50578 * 182.40865 * 21 5 4 42 42 H 1.09004 * 109.45893 * 294.17924 * 22 2 1 43 43 H 1.09002 * 109.46650 * 54.14029 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1189 0.5371 1.0143 6 6 5.6361 0.4451 0.8404 7 7 6.2244 -0.2150 2.0135 8 6 6.1399 0.6570 3.2132 9 6 7.2227 0.1105 4.1683 10 6 8.2367 -0.6089 3.2551 11 1 8.2966 -1.6658 3.5147 12 6 9.5941 0.0353 3.3705 13 1 9.8334 0.9016 2.7716 14 6 10.5306 -0.4812 4.2407 15 7 11.7494 0.0124 4.2639 16 14 10.0705 -1.8873 5.3812 17 1 10.4518 -3.1783 4.7541 18 1 10.7882 -1.7328 6.6719 19 1 8.6056 -1.8685 5.6240 20 6 7.6812 -0.4366 1.8250 21 6 3.5183 -0.8714 1.0208 22 6 1.9954 -0.7707 1.1336 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7325 1.8608 0.9376 27 1 1.5633 1.9256 -0.8330 28 1 3.9098 2.3513 -0.1311 29 1 3.7813 0.8569 -1.0907 30 1 3.8897 1.0362 1.9559 31 1 6.0520 1.4478 0.7412 32 1 5.8649 -0.1333 -0.0548 33 1 5.1541 0.5786 3.6715 34 1 6.3552 1.6919 2.9469 35 1 6.7837 -0.5936 4.8751 36 1 7.7069 0.9296 4.7001 37 1 12.4083 -0.3512 4.8758 38 1 8.1376 0.4271 1.3415 39 1 7.8558 -1.3384 1.2382 40 1 3.7814 -1.3835 0.0953 41 1 3.9100 -1.4302 1.8707 42 1 1.7325 -0.2708 2.0659 43 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259645927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:30 Heat of formation + Delta-G solvation = -6.826603 kcal Electronic energy + Delta-G solvation = -19256.719745 eV Core-core repulsion = 16528.809417 eV Total energy + Delta-G solvation = -2727.910328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37879 -37.92670 -34.58501 -32.63664 -30.92369 -30.65919 -28.31975 -27.47803 -24.84682 -23.56535 -23.09705 -21.75087 -20.24508 -19.70021 -18.91577 -16.92845 -15.88263 -15.37734 -15.15062 -15.03979 -14.71130 -14.18013 -13.85019 -13.64389 -13.25181 -12.75041 -12.73098 -12.46497 -12.43555 -12.14483 -11.70332 -11.49344 -11.21439 -11.17037 -11.09599 -10.83761 -10.47234 -10.32158 -10.23889 -10.19105 -10.14267 -9.71672 -9.49344 -8.95786 -8.50392 -8.48201 -7.86541 -6.07814 -4.06032 3.30318 3.39257 3.44516 3.80586 4.44030 4.49351 4.77179 4.82624 4.90920 5.09884 5.19443 5.24447 5.27628 5.38742 5.44012 5.50518 5.62727 5.63268 5.68130 5.72890 5.75002 5.85781 5.95437 6.02752 6.06968 6.15531 6.19213 6.26290 6.38943 6.42471 6.53996 6.69879 6.82170 6.88597 6.93045 6.96823 7.14805 7.41734 7.43596 7.69440 7.85912 8.54057 8.96600 9.55989 11.05370 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049254 B = 0.004236 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.344858 B = 6608.686438 C = 6871.972623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.082 4.082 6 C 0.051 3.949 7 N -0.516 5.516 8 C 0.039 3.961 9 C -0.125 4.125 10 C 0.015 3.985 11 H 0.038 0.962 12 C -0.510 4.510 13 H 0.071 0.929 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.260 1.260 20 C 0.047 3.953 21 C -0.101 4.101 22 C 0.054 3.946 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 0.715 -6.917 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.070 4.070 4 C -0.151 4.151 5 C -0.101 4.101 6 C -0.078 4.078 7 N -0.240 5.240 8 C -0.089 4.089 9 C -0.164 4.164 10 C -0.004 4.004 11 H 0.056 0.944 12 C -0.548 4.548 13 H 0.089 0.911 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.185 1.185 20 C -0.081 4.081 21 C -0.139 4.139 22 C -0.074 4.074 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.187 -0.032 -7.198 21.432 hybrid contribution 0.023 0.546 1.258 1.371 sum -20.164 0.514 -5.940 21.027 Atomic orbital electron populations 1.22341 0.87743 1.01897 1.00351 1.61947 1.07150 1.13893 1.43938 1.22065 0.95883 0.88965 1.00072 1.21631 0.93811 1.00127 0.99513 1.21161 0.94600 0.96298 0.98028 1.22248 0.93736 0.97130 0.94680 1.65365 1.15062 1.40864 1.02689 1.23033 0.98924 0.94568 0.92403 1.22740 0.95823 1.00069 0.97741 1.19823 0.94402 0.96202 0.89999 0.94420 1.21049 0.95313 1.14620 1.23848 0.91126 1.25062 0.94567 0.96650 0.96878 1.69919 1.03256 1.42954 1.37810 0.86839 0.79386 0.82772 0.80562 1.20422 1.21581 1.18453 1.23182 0.85274 0.99716 0.99885 1.21517 0.92342 0.96839 1.03183 1.22174 0.96703 0.97644 0.90832 0.91571 0.91491 0.95948 0.95146 0.91066 0.91706 0.91041 0.91679 0.95113 0.91233 0.92034 0.94759 0.93614 0.91418 0.92707 0.94162 0.91733 0.91510 0.90107 0.95222 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.07 0.58 0.79 16 2 N -0.54 -5.81 4.91 -242.97 -1.19 -7.00 16 3 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 4 C -0.11 -1.22 5.38 -26.65 -0.14 -1.36 16 5 C -0.08 -1.03 2.26 -90.50 -0.20 -1.23 16 6 C 0.05 0.75 4.20 -3.82 -0.02 0.74 16 7 N -0.52 -9.14 4.89 -229.97 -1.12 -10.27 16 8 C 0.04 0.69 5.74 -2.18 -0.01 0.68 16 9 C -0.13 -2.64 6.23 -25.35 -0.16 -2.80 16 10 C 0.02 0.36 2.45 -90.39 -0.22 0.14 16 11 H 0.04 0.91 5.80 -51.93 -0.30 0.61 16 12 C -0.51 -14.21 8.63 -34.44 -0.30 -14.50 16 13 H 0.07 2.14 7.90 -52.49 -0.41 1.73 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 16 Si 0.88 21.54 26.97 -169.99 -4.58 16.96 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.12 6.37 56.52 0.36 -5.76 16 20 C 0.05 0.96 6.02 -2.18 -0.01 0.95 16 21 C -0.10 -1.25 5.24 -26.65 -0.14 -1.39 16 22 C 0.05 0.59 5.46 -3.84 -0.02 0.57 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.87 7.05 -51.92 -0.37 0.50 16 31 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 32 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 33 H 0.06 1.00 7.64 -51.93 -0.40 0.60 16 34 H 0.03 0.62 7.82 -51.93 -0.41 0.21 16 35 H 0.05 0.93 7.96 -51.93 -0.41 0.52 16 36 H 0.07 1.50 7.70 -51.93 -0.40 1.10 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.04 0.86 7.60 -51.93 -0.39 0.47 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.10 7.84 -51.93 -0.41 0.70 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -29.31 324.51 -10.16 -39.47 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.15 Total: -2.37 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.77 Total: -14.94 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -1.54 Total: -44.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.58 Total: 16.96 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.31 -10.16 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds