Wall clock time and date at job start Mon Mar 30 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46844 * 110.99876 * 2 1 4 4 C 1.53033 * 109.52533 * 185.84291 * 3 2 1 5 5 C 1.53121 * 109.27919 * 300.81916 * 4 3 2 6 6 C 1.52993 * 109.52489 * 177.56076 * 5 4 3 7 7 N 1.46907 * 109.47301 * 175.00096 * 6 5 4 8 8 C 1.48559 * 110.99800 * 290.12819 * 7 6 5 9 9 C 1.54378 * 104.59155 * 200.95669 * 8 7 6 10 10 C 1.54264 * 105.06406 * 23.85250 * 9 8 7 11 11 H 1.08993 * 110.32526 * 241.00560 * 10 9 8 12 12 C 1.50700 * 110.32612 * 118.89179 * 10 9 8 13 13 H 1.07996 * 120.00430 * 275.22051 * 12 10 9 14 14 C 1.37879 * 119.99660 * 95.21978 * 12 10 9 15 15 N 1.31511 * 119.99836 * 174.51368 * 14 12 10 16 16 Si 1.86800 * 120.00110 * 354.79194 * 14 12 10 17 17 H 1.48506 * 109.47037 * 94.70162 * 16 14 12 18 18 H 1.48493 * 109.47213 * 214.70463 * 16 14 12 19 19 H 1.48503 * 109.46897 * 334.70459 * 16 14 12 20 20 C 1.48561 * 111.00238 * 174.70381 * 7 6 5 21 21 C 1.53121 * 109.15991 * 57.65392 * 5 4 3 22 22 C 1.46841 * 111.00502 * 124.21142 * 2 1 3 23 23 H 1.08992 * 109.47393 * 59.99918 * 1 2 3 24 24 H 1.09000 * 109.46585 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47053 * 299.99760 * 1 2 3 26 26 H 1.08999 * 109.46407 * 65.82438 * 3 2 1 27 27 H 1.09004 * 109.45605 * 305.85385 * 3 2 1 28 28 H 1.09000 * 109.50740 * 180.88166 * 4 3 2 29 29 H 1.09001 * 109.50701 * 60.76455 * 4 3 2 30 30 H 1.09008 * 109.52121 * 297.68900 * 5 4 3 31 31 H 1.08996 * 109.47764 * 55.00289 * 6 5 4 32 32 H 1.09003 * 109.47250 * 294.99819 * 6 5 4 33 33 H 1.09000 * 110.41226 * 82.17804 * 8 7 6 34 34 H 1.09002 * 110.41182 * 319.73113 * 8 7 6 35 35 H 1.08999 * 110.32736 * 264.95139 * 9 8 7 36 36 H 1.09000 * 110.32270 * 142.74743 * 9 8 7 37 37 H 0.96994 * 120.00118 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.40709 * 40.26521 * 20 7 6 39 39 H 1.08998 * 110.41205 * 277.81884 * 20 7 6 40 40 H 1.08996 * 109.50449 * 62.28573 * 21 5 4 41 41 H 1.09001 * 109.50578 * 182.40865 * 21 5 4 42 42 H 1.09004 * 109.45893 * 294.17924 * 22 2 1 43 43 H 1.09002 * 109.46650 * 54.14029 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1189 0.5371 1.0143 6 6 5.6361 0.4451 0.8404 7 7 6.2244 -0.2150 2.0135 8 6 6.1399 0.6570 3.2132 9 6 7.2227 0.1105 4.1683 10 6 8.2367 -0.6089 3.2551 11 1 8.2966 -1.6658 3.5147 12 6 9.5941 0.0353 3.3705 13 1 9.8334 0.9016 2.7716 14 6 10.5306 -0.4812 4.2407 15 7 11.7494 0.0124 4.2639 16 14 10.0705 -1.8873 5.3812 17 1 10.4518 -3.1783 4.7541 18 1 10.7882 -1.7328 6.6719 19 1 8.6056 -1.8685 5.6240 20 6 7.6812 -0.4366 1.8250 21 6 3.5183 -0.8714 1.0208 22 6 1.9954 -0.7707 1.1336 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7325 1.8608 0.9376 27 1 1.5633 1.9256 -0.8330 28 1 3.9098 2.3513 -0.1311 29 1 3.7813 0.8569 -1.0907 30 1 3.8897 1.0362 1.9559 31 1 6.0520 1.4478 0.7412 32 1 5.8649 -0.1333 -0.0548 33 1 5.1541 0.5786 3.6715 34 1 6.3552 1.6919 2.9469 35 1 6.7837 -0.5936 4.8751 36 1 7.7069 0.9296 4.7001 37 1 12.4083 -0.3512 4.8758 38 1 8.1376 0.4271 1.3415 39 1 7.8558 -1.3384 1.2382 40 1 3.7814 -1.3835 0.0953 41 1 3.9100 -1.4302 1.8707 42 1 1.7325 -0.2708 2.0659 43 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:29 Heat of formation + Delta-G solvation = -26.270236 kcal Electronic energy + Delta-G solvation = -19257.562884 eV Core-core repulsion = 16528.809417 eV Total energy + Delta-G solvation = -2728.753467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45553 -39.26533 -35.83659 -34.51018 -32.30675 -31.70836 -30.01042 -28.58990 -26.33565 -24.95767 -24.00896 -22.89169 -21.55494 -21.18338 -20.28876 -19.01655 -16.91440 -16.76845 -16.52436 -15.97318 -15.85854 -15.47812 -15.23975 -15.09444 -14.56123 -14.26105 -14.01393 -13.83327 -13.25262 -13.21662 -13.04112 -12.96013 -12.61200 -12.50314 -12.28894 -12.09291 -12.04869 -12.00992 -11.74525 -11.52323 -11.40799 -11.15984 -11.03396 -10.95466 -10.66371 -9.34743 -9.24889 -8.29521 -6.32346 1.36200 1.38607 1.51837 2.36817 3.04265 3.05350 3.16822 3.78522 3.90856 3.96217 4.04673 4.24903 4.28963 4.35725 4.44976 4.51982 4.52437 4.55548 4.61906 4.65892 4.72267 4.79310 4.80653 4.90777 4.94221 4.99033 5.01439 5.03548 5.12189 5.14255 5.19387 5.28250 5.37070 5.42621 5.53094 5.57252 5.67686 5.98046 6.16906 6.18664 6.24711 6.34927 6.73826 7.32821 8.87449 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049254 B = 0.004236 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.344858 B = 6608.686438 C = 6871.972623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.059 3.941 4 C -0.108 4.108 5 C -0.074 4.074 6 C 0.052 3.948 7 N -0.510 5.510 8 C 0.047 3.953 9 C -0.124 4.124 10 C 0.009 3.991 11 H 0.037 0.963 12 C -0.512 4.512 13 H 0.027 0.973 14 C 0.010 3.990 15 N -0.952 5.952 16 Si 0.945 3.055 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.240 1.240 20 C 0.053 3.947 21 C -0.096 4.096 22 C 0.058 3.942 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.266 0.734 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.057 -0.166 -6.872 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.068 4.068 4 C -0.147 4.147 5 C -0.093 4.093 6 C -0.077 4.077 7 N -0.233 5.233 8 C -0.081 4.081 9 C -0.162 4.162 10 C -0.011 4.011 11 H 0.055 0.945 12 C -0.551 4.551 13 H 0.046 0.954 14 C -0.187 4.187 15 N -0.592 5.592 16 Si 0.768 3.232 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.163 1.163 20 C -0.075 4.075 21 C -0.134 4.134 22 C -0.070 4.070 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.039 -0.905 -7.169 24.146 hybrid contribution 0.914 0.896 1.153 1.723 sum -22.125 -0.009 -6.015 22.928 Atomic orbital electron populations 1.22390 0.86364 1.02583 1.00973 1.61958 1.08495 1.14059 1.43692 1.22068 0.95132 0.88995 1.00638 1.21591 0.94514 1.00108 0.98449 1.21092 0.92706 0.96879 0.98659 1.22326 0.95217 0.96575 0.93546 1.65386 1.12717 1.41475 1.03753 1.22990 0.99141 0.94174 0.91806 1.22606 0.95969 0.99614 0.98024 1.19816 0.92856 0.95827 0.92584 0.94459 1.21278 0.97663 1.13358 1.22764 0.95442 1.25962 0.94285 0.99736 0.98680 1.70067 1.04675 1.45166 1.39262 0.85761 0.80150 0.79157 0.78094 1.19609 1.21371 1.16310 1.22982 0.87136 0.99382 0.97974 1.21435 0.93486 0.96230 1.02265 1.22103 0.95594 0.98257 0.91002 0.90552 0.90848 0.95686 0.95209 0.89683 0.91038 0.91278 0.92048 0.95563 0.90869 0.89303 0.95038 0.92292 0.93149 0.92555 0.95949 0.90989 0.92098 0.91373 0.95371 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.59 127.69 1.22 1.58 16 2 N -0.56 -10.41 4.91 -922.61 -4.53 -14.94 16 3 C 0.06 1.05 5.46 86.32 0.47 1.52 16 4 C -0.11 -2.11 5.38 30.65 0.16 -1.94 16 5 C -0.07 -1.71 2.26 -10.72 -0.02 -1.74 16 6 C 0.05 1.46 4.20 86.30 0.36 1.82 16 7 N -0.51 -17.25 4.89 -881.49 -4.31 -21.56 16 8 C 0.05 1.59 5.74 86.45 0.50 2.09 16 9 C -0.12 -5.05 6.23 31.49 0.20 -4.86 16 10 C 0.01 0.41 2.45 -10.64 -0.03 0.38 16 11 H 0.04 1.74 5.80 -2.39 -0.01 1.72 16 12 C -0.51 -29.32 8.63 25.60 0.22 -29.10 16 13 H 0.03 1.75 7.90 -2.91 -0.02 1.73 16 14 C 0.01 0.59 5.47 84.66 0.46 1.06 16 15 N -0.95 -59.81 13.96 21.45 0.30 -59.52 16 16 Si 0.94 44.33 26.97 68.60 1.85 46.18 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.24 -10.37 6.37 99.48 0.63 -9.74 16 20 C 0.05 2.17 6.02 86.45 0.52 2.69 16 21 C -0.10 -2.18 5.24 30.65 0.16 -2.02 16 22 C 0.06 1.14 5.46 86.33 0.47 1.61 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 25 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.48 7.05 -2.38 -0.02 1.47 16 31 H 0.03 0.77 7.88 -2.39 -0.02 0.75 16 32 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 33 H 0.09 2.59 7.64 -2.39 -0.02 2.57 16 34 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16 35 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16 36 H 0.05 2.21 7.70 -2.39 -0.02 2.19 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.02 0.98 7.60 -2.39 -0.02 0.96 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.72 7.84 -2.39 -0.02 1.70 16 42 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 Total: -1.00 -63.66 324.51 -1.13 -64.78 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.86 Total: 11.97 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.70 Total: -26.92 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -8.54 Total: -96.02 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.85 Total: 46.18 kcal Total: -63.66 -1.13 -64.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.514 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds