Wall clock time and date at job start Mon Mar 30 2020 04:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48529 * 111.00053 * 2 1 4 4 C 1.54937 * 103.22556 * 200.28373 * 3 2 1 5 5 C 1.54599 * 102.92223 * 37.41436 * 4 3 2 6 6 H 1.08994 * 110.39208 * 97.00415 * 5 4 3 7 7 N 1.46903 * 110.30370 * 219.12659 * 5 4 3 8 8 C 1.46846 * 111.00207 * 58.90817 * 7 5 4 9 9 C 1.53037 * 109.52358 * 185.83758 * 8 7 5 10 10 C 1.53123 * 109.27648 * 300.81585 * 9 8 7 11 11 C 1.53121 * 109.15865 * 57.65283 * 10 9 8 12 12 C 1.46935 * 110.97949 * 183.13165 * 7 5 4 13 13 H 1.08998 * 109.45068 * 294.16003 * 12 7 5 14 14 C 1.53001 * 109.52023 * 54.15868 * 12 7 5 15 15 C 1.50694 * 109.47176 * 182.06105 * 14 12 7 16 16 H 1.07999 * 120.00091 * 1.43185 * 15 14 12 17 17 C 1.37878 * 120.00246 * 181.43260 * 15 14 12 18 18 N 1.31514 * 119.99530 * 7.11136 * 17 15 14 19 19 Si 1.86795 * 120.00495 * 187.10506 * 17 15 14 20 20 H 1.48501 * 109.46919 * 94.90175 * 19 17 15 21 21 H 1.48496 * 109.47672 * 214.90667 * 19 17 15 22 22 H 1.48503 * 109.46793 * 334.90980 * 19 17 15 23 23 C 1.47907 * 110.99389 * 242.60510 * 2 1 3 24 24 H 1.09005 * 109.47418 * 180.29736 * 1 2 3 25 25 H 1.09007 * 109.46872 * 300.28904 * 1 2 3 26 26 H 1.08997 * 109.47279 * 60.29030 * 1 2 3 27 27 H 1.09003 * 110.66578 * 318.71332 * 3 2 1 28 28 H 1.08992 * 110.66866 * 81.68109 * 3 2 1 29 29 H 1.09002 * 110.72552 * 279.05341 * 4 3 2 30 30 H 1.09001 * 110.72303 * 155.77046 * 4 3 2 31 31 H 1.08994 * 109.46542 * 65.81622 * 8 7 5 32 32 H 1.09001 * 109.44700 * 305.84287 * 8 7 5 33 33 H 1.09004 * 109.50193 * 180.87660 * 9 8 7 34 34 H 1.08997 * 109.50613 * 60.75563 * 9 8 7 35 35 H 1.09000 * 109.52078 * 297.75273 * 10 9 8 36 36 H 1.08995 * 109.57642 * 177.58951 * 10 9 8 37 37 H 1.08997 * 109.50192 * 62.29445 * 11 10 9 38 38 H 1.09005 * 109.49991 * 182.36370 * 11 10 9 39 39 H 1.09001 * 109.46968 * 302.06251 * 14 12 7 40 40 H 1.09005 * 109.46563 * 62.06173 * 14 12 7 41 41 H 0.97001 * 120.00048 * 180.02562 * 18 17 15 42 42 H 1.08995 * 109.92079 * 26.48742 * 23 2 1 43 43 H 1.09001 * 110.07995 * 265.28944 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2105 -0.5229 5 6 3.2981 0.1053 -1.5932 6 1 3.2141 0.5470 -2.5861 7 7 4.4420 -0.8150 -1.5406 8 6 4.5546 -1.4395 -0.2163 9 6 5.8348 -2.2756 -0.1523 10 6 5.7915 -3.3504 -1.2421 11 6 5.6252 -2.6761 -2.6067 12 6 4.3510 -1.8285 -2.6005 13 1 3.4891 -2.4698 -2.4165 14 6 4.1918 -1.1375 -3.9563 15 6 4.0479 -2.1781 -5.0367 16 1 4.0447 -3.2270 -4.7792 17 6 3.9202 -1.7913 -6.3539 18 7 4.0638 -0.5266 -6.6846 19 14 3.5436 -3.0635 -7.6688 20 1 2.0787 -3.1095 -7.9078 21 1 4.2393 -2.6952 -8.9279 22 1 4.0132 -4.3975 -7.2157 23 6 1.9989 -0.6354 -1.2260 24 1 -0.3634 -1.0277 0.0053 25 1 -0.3633 0.5184 0.8875 26 1 -0.3634 0.5093 -0.8925 27 1 1.4237 2.0204 -0.6730 28 1 2.0015 1.7987 1.0090 29 1 4.1116 0.8835 0.2786 30 1 3.8122 2.1351 -0.9717 31 1 3.6917 -2.0826 -0.0435 32 1 4.5887 -0.6640 0.5489 33 1 5.9101 -2.7515 0.8254 34 1 6.6990 -1.6307 -0.3114 35 1 4.9498 -4.0189 -1.0611 36 1 6.7197 -3.9216 -1.2287 37 1 6.4862 -2.0376 -2.8044 38 1 5.5516 -3.4382 -3.3826 39 1 3.3039 -0.5055 -3.9399 40 1 5.0706 -0.5245 -4.1570 41 1 3.9736 -0.2543 -7.6113 42 1 1.2757 -0.5403 -2.0359 43 1 2.2115 -1.6882 -1.0400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259659935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:10 Heat of formation + Delta-G solvation = 3.208721 kcal Electronic energy + Delta-G solvation = -20109.628407 eV Core-core repulsion = 17382.153244 eV Total energy + Delta-G solvation = -2727.475163 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81128 -37.34101 -33.40310 -33.21835 -31.22564 -30.26592 -27.84662 -26.95672 -25.33783 -23.57790 -23.18029 -21.14841 -20.33388 -19.94225 -18.26208 -16.54614 -16.07940 -15.63603 -14.78380 -14.37240 -14.36024 -13.96292 -13.60157 -13.53339 -13.05992 -12.95352 -12.51647 -12.08193 -12.00873 -11.70367 -11.49062 -11.39177 -11.17789 -11.02099 -10.91626 -10.75554 -10.70049 -10.52079 -10.23394 -10.18727 -9.71842 -9.67098 -9.09467 -8.92263 -8.34159 -8.31037 -7.56119 -6.00097 -4.00136 3.31158 3.38374 3.41180 4.17107 4.38215 4.52922 4.93982 5.01521 5.28568 5.34027 5.35665 5.40697 5.45000 5.50867 5.54117 5.66102 5.68017 5.83660 5.86589 5.91373 5.99833 6.04441 6.12066 6.15730 6.22894 6.29219 6.36804 6.47350 6.51674 6.58756 6.61196 6.83371 7.00333 7.01143 7.12483 7.19260 7.59065 7.68901 7.87418 7.91164 8.11033 8.45746 9.05729 9.62474 11.11291 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.007148 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.480156 B = 3916.189149 C = 4782.697925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.521 5.521 3 C 0.033 3.967 4 C -0.120 4.120 5 C 0.075 3.925 6 H 0.102 0.898 7 N -0.523 5.523 8 C 0.054 3.946 9 C -0.114 4.114 10 C -0.123 4.123 11 C -0.099 4.099 12 C 0.092 3.908 13 H 0.026 0.974 14 C 0.031 3.969 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.006 3.994 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.013 0.987 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.046 0.954 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 1.028 13.628 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.034 4.034 6 H 0.120 0.880 7 N -0.247 5.247 8 C -0.074 4.074 9 C -0.152 4.152 10 C -0.161 4.161 11 C -0.137 4.137 12 C -0.015 4.015 13 H 0.044 0.956 14 C -0.007 4.007 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.124 4.124 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.622 1.116 13.855 13.995 hybrid contribution -1.429 -0.730 -1.468 2.175 sum -3.052 0.386 12.388 12.764 Atomic orbital electron populations 1.22492 0.88521 1.01864 1.00360 1.64730 1.07590 1.14839 1.37372 1.23247 0.95710 0.90008 1.00554 1.22665 0.95687 0.98715 0.98716 1.22656 0.87560 0.93119 1.00085 0.87971 1.62194 1.39768 1.19556 1.03151 1.22078 0.96485 0.96928 0.91933 1.21566 0.98408 0.97373 0.97814 1.21659 1.00576 0.97442 0.96428 1.21520 0.98211 0.98827 0.95175 1.21798 0.95632 0.91553 0.92560 0.95568 1.19194 0.97336 0.95660 0.88465 1.21199 1.49727 0.93030 0.91513 0.92630 1.24975 0.95528 0.95151 0.98580 1.69985 1.49718 1.15511 1.17926 0.86650 0.78338 0.81950 0.81500 1.20864 1.21287 1.19851 1.23586 0.97905 1.00353 0.90530 0.91625 0.91723 0.95447 0.93900 0.90441 0.90057 0.90881 0.95047 0.91155 0.92691 0.91603 0.93036 0.92787 0.91890 0.90905 0.96882 0.95444 0.93097 0.93577 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.41 60.07 0.57 0.77 16 2 N -0.52 -7.42 5.55 -238.71 -1.33 -8.75 16 3 C 0.03 0.42 6.56 -1.90 -0.01 0.41 16 4 C -0.12 -1.69 6.52 -24.87 -0.16 -1.85 16 5 C 0.08 1.30 2.69 -66.35 -0.18 1.12 16 6 H 0.10 2.04 5.92 -51.93 -0.31 1.73 16 7 N -0.52 -9.48 4.52 -217.08 -0.98 -10.46 16 8 C 0.05 0.84 4.77 -3.83 -0.02 0.82 16 9 C -0.11 -1.65 6.09 -26.65 -0.16 -1.82 16 10 C -0.12 -1.94 6.00 -26.61 -0.16 -2.10 16 11 C -0.10 -1.93 5.13 -26.65 -0.14 -2.06 16 12 C 0.09 1.90 1.58 -67.67 -0.11 1.79 16 13 H 0.03 0.57 6.93 -51.93 -0.36 0.21 16 14 C 0.03 0.77 4.17 -27.89 -0.12 0.66 16 15 C -0.52 -14.21 8.36 -34.44 -0.29 -14.50 16 16 H 0.06 1.50 6.92 -52.49 -0.36 1.14 16 17 C 0.06 1.67 5.45 -17.82 -0.10 1.57 16 18 N -0.89 -26.48 13.30 55.43 0.74 -25.74 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.01 0.09 5.37 -2.75 -0.01 0.08 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.03 0.33 7.99 -51.93 -0.41 -0.08 16 27 H 0.04 0.54 8.00 -51.93 -0.42 0.13 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.13 5.66 -51.93 -0.29 0.84 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.52 6.40 -51.93 -0.33 0.18 16 32 H 0.07 1.03 5.75 -51.93 -0.30 0.74 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.50 6.81 -51.93 -0.35 1.15 16 39 H 0.01 0.35 6.10 -51.93 -0.32 0.03 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.05 0.80 7.69 -51.93 -0.40 0.41 16 43 H 0.08 1.41 5.18 -51.93 -0.27 1.14 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -28.71 315.41 -10.21 -38.92 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.49 Total: -0.10 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.89 Total: -15.12 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -1.57 Total: -44.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.71 -10.21 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.130 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds