Wall clock time and date at job start Mon Mar 30 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48529 * 111.00053 * 2 1 4 4 C 1.54937 * 103.22556 * 200.28373 * 3 2 1 5 5 C 1.54599 * 102.92223 * 37.41436 * 4 3 2 6 6 H 1.08994 * 110.39208 * 97.00415 * 5 4 3 7 7 N 1.46903 * 110.30370 * 219.12659 * 5 4 3 8 8 C 1.46846 * 111.00207 * 58.90817 * 7 5 4 9 9 C 1.53037 * 109.52358 * 185.83758 * 8 7 5 10 10 C 1.53123 * 109.27648 * 300.81585 * 9 8 7 11 11 C 1.53121 * 109.15865 * 57.65283 * 10 9 8 12 12 C 1.46935 * 110.97949 * 183.13165 * 7 5 4 13 13 H 1.08998 * 109.45068 * 294.16003 * 12 7 5 14 14 C 1.53001 * 109.52023 * 54.15868 * 12 7 5 15 15 C 1.50694 * 109.47176 * 182.06105 * 14 12 7 16 16 H 1.07999 * 120.00091 * 1.43185 * 15 14 12 17 17 C 1.37878 * 120.00246 * 181.43260 * 15 14 12 18 18 N 1.31514 * 119.99530 * 7.11136 * 17 15 14 19 19 Si 1.86795 * 120.00495 * 187.10506 * 17 15 14 20 20 H 1.48501 * 109.46919 * 94.90175 * 19 17 15 21 21 H 1.48496 * 109.47672 * 214.90667 * 19 17 15 22 22 H 1.48503 * 109.46793 * 334.90980 * 19 17 15 23 23 C 1.47907 * 110.99389 * 242.60510 * 2 1 3 24 24 H 1.09005 * 109.47418 * 180.29736 * 1 2 3 25 25 H 1.09007 * 109.46872 * 300.28904 * 1 2 3 26 26 H 1.08997 * 109.47279 * 60.29030 * 1 2 3 27 27 H 1.09003 * 110.66578 * 318.71332 * 3 2 1 28 28 H 1.08992 * 110.66866 * 81.68109 * 3 2 1 29 29 H 1.09002 * 110.72552 * 279.05341 * 4 3 2 30 30 H 1.09001 * 110.72303 * 155.77046 * 4 3 2 31 31 H 1.08994 * 109.46542 * 65.81622 * 8 7 5 32 32 H 1.09001 * 109.44700 * 305.84287 * 8 7 5 33 33 H 1.09004 * 109.50193 * 180.87660 * 9 8 7 34 34 H 1.08997 * 109.50613 * 60.75563 * 9 8 7 35 35 H 1.09000 * 109.52078 * 297.75273 * 10 9 8 36 36 H 1.08995 * 109.57642 * 177.58951 * 10 9 8 37 37 H 1.08997 * 109.50192 * 62.29445 * 11 10 9 38 38 H 1.09005 * 109.49991 * 182.36370 * 11 10 9 39 39 H 1.09001 * 109.46968 * 302.06251 * 14 12 7 40 40 H 1.09005 * 109.46563 * 62.06173 * 14 12 7 41 41 H 0.97001 * 120.00048 * 180.02562 * 18 17 15 42 42 H 1.08995 * 109.92079 * 26.48742 * 23 2 1 43 43 H 1.09001 * 110.07995 * 265.28944 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2105 -0.5229 5 6 3.2981 0.1053 -1.5932 6 1 3.2141 0.5470 -2.5861 7 7 4.4420 -0.8150 -1.5406 8 6 4.5546 -1.4395 -0.2163 9 6 5.8348 -2.2756 -0.1523 10 6 5.7915 -3.3504 -1.2421 11 6 5.6252 -2.6761 -2.6067 12 6 4.3510 -1.8285 -2.6005 13 1 3.4891 -2.4698 -2.4165 14 6 4.1918 -1.1375 -3.9563 15 6 4.0479 -2.1781 -5.0367 16 1 4.0447 -3.2270 -4.7792 17 6 3.9202 -1.7913 -6.3539 18 7 4.0638 -0.5266 -6.6846 19 14 3.5436 -3.0635 -7.6688 20 1 2.0787 -3.1095 -7.9078 21 1 4.2393 -2.6952 -8.9279 22 1 4.0132 -4.3975 -7.2157 23 6 1.9989 -0.6354 -1.2260 24 1 -0.3634 -1.0277 0.0053 25 1 -0.3633 0.5184 0.8875 26 1 -0.3634 0.5093 -0.8925 27 1 1.4237 2.0204 -0.6730 28 1 2.0015 1.7987 1.0090 29 1 4.1116 0.8835 0.2786 30 1 3.8122 2.1351 -0.9717 31 1 3.6917 -2.0826 -0.0435 32 1 4.5887 -0.6640 0.5489 33 1 5.9101 -2.7515 0.8254 34 1 6.6990 -1.6307 -0.3114 35 1 4.9498 -4.0189 -1.0611 36 1 6.7197 -3.9216 -1.2287 37 1 6.4862 -2.0376 -2.8044 38 1 5.5516 -3.4382 -3.3826 39 1 3.3039 -0.5055 -3.9399 40 1 5.0706 -0.5245 -4.1570 41 1 3.9736 -0.2543 -7.6113 42 1 1.2757 -0.5403 -2.0359 43 1 2.2115 -1.6882 -1.0400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:09 Heat of formation + Delta-G solvation = -15.971558 kcal Electronic energy + Delta-G solvation = -20110.460126 eV Core-core repulsion = 17382.153244 eV Total energy + Delta-G solvation = -2728.306883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18121 -38.65638 -35.37824 -34.54270 -32.99145 -31.51462 -29.22215 -28.70807 -26.50852 -25.46413 -24.54277 -22.49697 -21.76817 -21.29038 -19.76461 -18.59258 -17.46230 -16.91462 -16.53231 -15.96161 -15.66085 -15.35299 -14.99404 -14.76160 -14.63812 -14.19301 -14.08256 -13.70336 -13.52115 -13.12353 -13.08350 -12.78562 -12.58215 -12.54682 -12.43868 -12.19746 -12.11045 -12.04738 -11.83199 -11.60112 -11.44659 -11.27104 -10.83870 -10.74788 -10.47682 -9.50890 -9.03589 -8.19748 -6.27656 1.38073 1.38320 1.49953 2.39323 2.98870 3.09545 3.13627 3.73754 3.77351 4.01175 4.09815 4.14677 4.19573 4.30005 4.37262 4.43997 4.51080 4.54439 4.60246 4.64538 4.75003 4.80739 4.87770 4.91989 4.93162 4.96040 5.06049 5.15456 5.16883 5.22479 5.28517 5.33984 5.46425 5.46558 5.57252 5.74166 5.80090 5.81542 6.02426 6.17393 6.42967 6.45880 6.87616 7.39623 8.92399 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.007148 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.480156 B = 3916.189149 C = 4782.697925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.037 3.963 4 C -0.111 4.111 5 C 0.070 3.930 6 H 0.062 0.938 7 N -0.529 5.529 8 C 0.056 3.944 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.105 3.895 13 H 0.015 0.985 14 C 0.044 3.956 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.017 3.983 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.022 0.978 27 H 0.043 0.957 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.053 0.947 39 H -0.010 1.010 40 H -0.009 1.009 41 H 0.262 0.738 42 H 0.024 0.976 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 0.189 15.687 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.091 4.091 4 C -0.149 4.149 5 C -0.039 4.039 6 H 0.081 0.919 7 N -0.253 5.253 8 C -0.071 4.071 9 C -0.147 4.147 10 C -0.153 4.153 11 C -0.136 4.136 12 C -0.003 4.003 13 H 0.033 0.967 14 C 0.006 3.994 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.113 4.113 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.730 0.275 15.937 16.033 hybrid contribution -1.412 -0.409 -2.104 2.567 sum -3.142 -0.134 13.832 14.185 Atomic orbital electron populations 1.22567 0.87104 1.02346 1.01304 1.64760 1.08954 1.15586 1.35333 1.23314 0.94387 0.89293 1.02067 1.22637 0.97086 0.97502 0.97709 1.22591 0.87964 0.94058 0.99328 0.91936 1.62169 1.40242 1.18961 1.03935 1.22168 0.97089 0.97472 0.90396 1.21580 0.97454 0.96810 0.98872 1.21602 1.01830 0.97768 0.94147 1.21446 0.96640 0.98040 0.97429 1.21460 0.96046 0.91640 0.91127 0.96684 1.18977 0.94438 0.94752 0.91197 1.21567 1.49398 0.93561 0.92429 0.92307 1.25883 0.95217 0.97248 1.01110 1.70121 1.50724 1.17645 1.18554 0.85541 0.78292 0.79538 0.78351 1.20163 1.20800 1.18652 1.23354 0.97086 0.99808 0.91064 0.91520 0.89202 0.95956 0.93857 0.87614 0.89052 0.90447 0.95485 0.89410 0.89427 0.91688 0.92662 0.90650 0.93244 0.92787 0.99232 0.99105 0.92941 0.95712 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.41 127.69 1.20 1.55 16 2 N -0.52 -14.09 5.55 -909.15 -5.05 -19.14 16 3 C 0.04 0.88 6.56 86.65 0.57 1.44 16 4 C -0.11 -3.02 6.52 31.80 0.21 -2.82 16 5 C 0.07 2.50 2.69 45.79 0.12 2.62 16 6 H 0.06 2.70 5.92 -2.39 -0.01 2.68 16 7 N -0.53 -19.44 4.52 -840.72 -3.80 -23.23 16 8 C 0.06 1.65 4.77 86.33 0.41 2.06 16 9 C -0.11 -2.87 6.09 30.65 0.19 -2.69 16 10 C -0.12 -3.43 6.00 30.68 0.18 -3.24 16 11 C -0.10 -3.83 5.13 30.65 0.16 -3.67 16 12 C 0.11 4.52 1.58 44.92 0.07 4.59 16 13 H 0.02 0.68 6.93 -2.39 -0.02 0.67 16 14 C 0.04 2.35 4.17 29.85 0.12 2.47 16 15 C -0.53 -30.36 8.36 25.60 0.21 -30.15 16 16 H 0.06 3.25 6.92 -2.91 -0.02 3.23 16 17 C 0.00 0.19 5.45 84.65 0.46 0.65 16 18 N -0.93 -57.19 13.30 21.45 0.29 -56.91 16 19 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 C 0.02 0.56 5.37 86.44 0.46 1.03 16 24 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.02 0.52 7.99 -2.39 -0.02 0.51 16 27 H 0.04 1.03 8.00 -2.39 -0.02 1.01 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.31 5.66 -2.39 -0.01 2.29 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.03 0.84 6.40 -2.39 -0.02 0.82 16 32 H 0.09 2.32 5.75 -2.39 -0.01 2.30 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 2.28 6.81 -2.38 -0.02 2.26 16 39 H -0.01 -0.61 6.10 -2.39 -0.01 -0.62 16 40 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.02 0.91 7.69 -2.39 -0.02 0.89 16 43 H 0.07 2.43 5.18 -2.39 -0.01 2.42 16 Total: -1.00 -64.18 315.41 -1.20 -65.38 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.96 Total: 13.22 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.38 Total: -26.15 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -8.56 Total: -99.28 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.18 -1.20 -65.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.410 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds