Wall clock time and date at job start Mon Mar 30 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48559 * 110.99837 * 2 1 4 4 C 1.54379 * 104.59326 * 200.96285 * 3 2 1 5 5 C 1.54264 * 105.06088 * 23.85356 * 4 3 2 6 6 H 1.09000 * 110.32321 * 241.00192 * 5 4 3 7 7 N 1.46901 * 110.32312 * 118.89844 * 5 4 3 8 8 C 1.46848 * 110.99834 * 305.52345 * 7 5 4 9 9 C 1.53033 * 109.52362 * 185.84244 * 8 7 5 10 10 C 1.53128 * 109.27727 * 300.82339 * 9 8 7 11 11 C 1.53117 * 109.15998 * 57.65439 * 10 9 8 12 12 C 1.46841 * 111.00345 * 69.73509 * 7 5 4 13 13 H 1.08997 * 109.45223 * 294.17659 * 12 7 5 14 14 C 1.53009 * 109.46218 * 54.14491 * 12 7 5 15 15 C 1.50698 * 109.47198 * 182.35304 * 14 12 7 16 16 H 1.08001 * 119.99697 * 5.09897 * 15 14 12 17 17 C 1.37875 * 119.99787 * 185.37198 * 15 14 12 18 18 N 1.31512 * 119.99994 * 359.72889 * 17 15 14 19 19 Si 1.86797 * 119.99951 * 179.72275 * 17 15 14 20 20 H 1.48502 * 109.47184 * 60.00195 * 19 17 15 21 21 H 1.48500 * 109.47193 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47195 * 300.00180 * 19 17 15 23 23 C 1.48566 * 110.99593 * 244.58529 * 2 1 3 24 24 H 1.08996 * 109.47492 * 60.12115 * 1 2 3 25 25 H 1.08998 * 109.47433 * 180.12948 * 1 2 3 26 26 H 1.09004 * 109.46995 * 300.12824 * 1 2 3 27 27 H 1.08997 * 110.41173 * 82.18614 * 3 2 1 28 28 H 1.09003 * 110.41083 * 319.74113 * 3 2 1 29 29 H 1.09000 * 110.32279 * 264.95992 * 4 3 2 30 30 H 1.08999 * 110.41138 * 142.78980 * 4 3 2 31 31 H 1.09005 * 109.45977 * 65.82618 * 8 7 5 32 32 H 1.08997 * 109.45753 * 305.85336 * 8 7 5 33 33 H 1.08996 * 109.50585 * 180.88330 * 9 8 7 34 34 H 1.09002 * 109.53778 * 60.78325 * 9 8 7 35 35 H 1.08997 * 109.52174 * 297.74925 * 10 9 8 36 36 H 1.09003 * 109.57316 * 177.59550 * 10 9 8 37 37 H 1.08995 * 109.49945 * 182.40423 * 11 10 9 38 38 H 1.08993 * 109.53642 * 62.30515 * 11 10 9 39 39 H 1.09006 * 109.46740 * 62.34944 * 14 12 7 40 40 H 1.09003 * 109.46552 * 302.35728 * 14 12 7 41 41 H 0.97002 * 119.99861 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.41181 * 40.25492 * 23 2 1 43 43 H 1.09004 * 110.40514 * 277.81933 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 1 4.1496 -0.7686 -0.9364 7 7 3.7806 0.2283 -2.7602 8 6 2.8875 1.2502 -3.3210 9 6 3.1716 1.4131 -4.8159 10 6 4.6338 1.8238 -5.0108 11 6 5.5416 0.7670 -4.3755 12 6 5.1887 0.6229 -2.8934 13 1 5.3482 1.5752 -2.3877 14 6 6.0801 -0.4467 -2.2588 15 6 7.5213 -0.0147 -2.3439 16 1 7.7701 0.9631 -2.7291 17 6 8.5226 -0.8700 -1.9352 18 7 8.2196 -2.0607 -1.4662 19 14 10.3095 -0.3375 -2.0479 20 1 10.5168 0.8785 -1.2211 21 1 11.1838 -1.4299 -1.5504 22 1 10.6486 -0.0381 -3.4624 23 6 2.0013 -0.5953 -1.2528 24 1 -0.3634 0.5119 -0.8910 25 1 -0.3634 -1.0276 0.0023 26 1 -0.3633 0.5158 0.8889 27 1 2.0079 1.7916 1.0120 28 1 1.4098 2.0212 -0.6602 29 1 4.1483 1.1748 0.2933 30 1 3.6953 2.0993 -1.1697 31 1 3.0580 2.1996 -2.8134 32 1 1.8511 0.9437 -3.1796 33 1 2.5194 2.1827 -5.2286 34 1 2.9879 0.4680 -5.3270 35 1 4.8080 2.7881 -4.5335 36 1 4.8530 1.8996 -6.0759 37 1 6.5825 1.0750 -4.4735 38 1 5.3960 -0.1888 -4.8788 39 1 5.9512 -1.3894 -2.7908 40 1 5.8013 -0.5784 -1.2133 41 1 8.9240 -2.6625 -1.1790 42 1 1.4097 -0.2712 -2.1090 43 1 2.0077 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259659936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:12 Heat of formation + Delta-G solvation = 3.947907 kcal Electronic energy + Delta-G solvation = -20065.188005 eV Core-core repulsion = 17337.744895 eV Total energy + Delta-G solvation = -2727.443110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87799 -37.39340 -33.46926 -33.23031 -31.12765 -30.17366 -28.17598 -27.02916 -25.22249 -23.59374 -23.22878 -21.17776 -20.38285 -20.00115 -18.26296 -16.53456 -16.08311 -15.71048 -14.73341 -14.50015 -14.22679 -13.98835 -13.83253 -13.62155 -13.20203 -12.73152 -12.64728 -12.25448 -12.03326 -11.60900 -11.44278 -11.39991 -11.34647 -11.02945 -10.96612 -10.76758 -10.72255 -10.49868 -10.25909 -10.19272 -9.76930 -9.65311 -9.09994 -8.95012 -8.40444 -8.29187 -7.62138 -5.96772 -3.98271 3.34574 3.39518 3.41319 4.04461 4.43863 4.58524 4.87699 5.00508 5.19393 5.26936 5.29745 5.37917 5.40935 5.43624 5.46394 5.59303 5.72504 5.76283 5.78456 5.81560 5.91486 6.01750 6.04930 6.15524 6.18718 6.24007 6.38571 6.39564 6.47394 6.51067 6.62268 6.81299 6.86109 7.00806 7.09032 7.17780 7.59578 7.69101 7.85684 7.90582 8.11608 8.46952 9.07617 9.64641 11.14495 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.006617 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.573845 B = 4230.305010 C = 5084.010893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.517 5.517 3 C 0.036 3.964 4 C -0.156 4.156 5 C 0.080 3.920 6 H 0.110 0.890 7 N -0.525 5.525 8 C 0.050 3.950 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.100 4.100 12 C 0.094 3.906 13 H 0.027 0.973 14 C 0.030 3.970 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.037 3.963 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.050 0.950 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 6.573 -1.584 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.241 5.241 3 C -0.092 4.092 4 C -0.196 4.196 5 C -0.029 4.029 6 H 0.128 0.872 7 N -0.249 5.249 8 C -0.078 4.078 9 C -0.151 4.151 10 C -0.161 4.161 11 C -0.138 4.138 12 C -0.013 4.013 13 H 0.045 0.955 14 C -0.007 4.007 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.090 4.090 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.325 5.667 -1.317 14.540 hybrid contribution 0.793 1.489 -0.241 1.704 sum -12.532 7.156 -1.558 14.515 Atomic orbital electron populations 1.22475 0.88531 1.01976 1.00316 1.65354 1.07605 1.15357 1.35742 1.23064 0.95635 0.89950 1.00549 1.22958 0.96015 0.99786 1.00828 1.22542 0.96214 0.96330 0.87843 0.87207 1.62147 1.04522 1.42409 1.15844 1.22112 0.96866 0.93742 0.95064 1.21546 0.96699 1.01036 0.95783 1.21660 0.95235 0.99175 1.00025 1.21527 0.98970 0.98161 0.95120 1.21769 0.85342 0.98469 0.95738 0.95514 1.19212 0.92512 0.93592 0.95391 1.21129 0.91310 1.00845 1.42239 0.92826 1.24966 0.98854 0.94943 0.95421 1.69955 1.32780 1.07500 1.42952 0.86715 0.85129 0.78104 0.78376 1.20369 1.21341 1.20290 1.23260 0.95263 1.00374 0.90139 0.95739 0.91343 0.91645 0.90596 0.94474 0.90676 0.91172 0.95431 0.91869 0.92749 0.91450 0.93033 0.92690 0.90787 0.91848 0.95386 0.96532 0.92987 0.93189 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.53 60.07 0.57 0.75 16 2 N -0.52 -7.23 5.66 -238.22 -1.35 -8.58 16 3 C 0.04 0.49 6.49 -2.18 -0.01 0.47 16 4 C -0.16 -2.48 5.66 -25.35 -0.14 -2.62 16 5 C 0.08 1.39 2.79 -66.33 -0.18 1.20 16 6 H 0.11 2.25 5.79 -51.93 -0.30 1.95 16 7 N -0.53 -9.40 4.50 -217.12 -0.98 -10.37 16 8 C 0.05 0.76 4.75 -3.84 -0.02 0.74 16 9 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 10 C -0.12 -1.89 6.00 -26.60 -0.16 -2.05 16 11 C -0.10 -1.91 5.14 -26.65 -0.14 -2.04 16 12 C 0.09 1.93 1.60 -67.72 -0.11 1.82 16 13 H 0.03 0.57 7.13 -51.93 -0.37 0.20 16 14 C 0.03 0.76 4.17 -27.88 -0.12 0.64 16 15 C -0.52 -14.21 8.30 -34.44 -0.29 -14.49 16 16 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.04 0.56 5.98 -2.18 -0.01 0.55 16 24 H 0.02 0.26 7.97 -51.93 -0.41 -0.16 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.47 7.97 -51.93 -0.41 0.05 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.13 5.23 -51.93 -0.27 0.86 16 31 H 0.03 0.42 6.25 -51.93 -0.32 0.10 16 32 H 0.06 0.89 5.86 -51.93 -0.30 0.58 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.51 6.90 -51.93 -0.36 1.15 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.44 6.03 -51.93 -0.31 0.13 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.05 0.72 5.52 -51.93 -0.29 0.43 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -28.70 315.87 -10.23 -38.93 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.51 Total: -0.18 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.87 Total: -15.19 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -1.59 Total: -44.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.70 -10.23 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.879 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds