Wall clock time and date at job start Mon Mar 30 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48559 * 110.99837 * 2 1 4 4 C 1.54379 * 104.59326 * 200.96285 * 3 2 1 5 5 C 1.54264 * 105.06088 * 23.85356 * 4 3 2 6 6 H 1.09000 * 110.32321 * 241.00192 * 5 4 3 7 7 N 1.46901 * 110.32312 * 118.89844 * 5 4 3 8 8 C 1.46848 * 110.99834 * 305.52345 * 7 5 4 9 9 C 1.53033 * 109.52362 * 185.84244 * 8 7 5 10 10 C 1.53128 * 109.27727 * 300.82339 * 9 8 7 11 11 C 1.53117 * 109.15998 * 57.65439 * 10 9 8 12 12 C 1.46841 * 111.00345 * 69.73509 * 7 5 4 13 13 H 1.08997 * 109.45223 * 294.17659 * 12 7 5 14 14 C 1.53009 * 109.46218 * 54.14491 * 12 7 5 15 15 C 1.50698 * 109.47198 * 182.35304 * 14 12 7 16 16 H 1.08001 * 119.99697 * 5.09897 * 15 14 12 17 17 C 1.37875 * 119.99787 * 185.37198 * 15 14 12 18 18 N 1.31512 * 119.99994 * 359.72889 * 17 15 14 19 19 Si 1.86797 * 119.99951 * 179.72275 * 17 15 14 20 20 H 1.48502 * 109.47184 * 60.00195 * 19 17 15 21 21 H 1.48500 * 109.47193 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47195 * 300.00180 * 19 17 15 23 23 C 1.48566 * 110.99593 * 244.58529 * 2 1 3 24 24 H 1.08996 * 109.47492 * 60.12115 * 1 2 3 25 25 H 1.08998 * 109.47433 * 180.12948 * 1 2 3 26 26 H 1.09004 * 109.46995 * 300.12824 * 1 2 3 27 27 H 1.08997 * 110.41173 * 82.18614 * 3 2 1 28 28 H 1.09003 * 110.41083 * 319.74113 * 3 2 1 29 29 H 1.09000 * 110.32279 * 264.95992 * 4 3 2 30 30 H 1.08999 * 110.41138 * 142.78980 * 4 3 2 31 31 H 1.09005 * 109.45977 * 65.82618 * 8 7 5 32 32 H 1.08997 * 109.45753 * 305.85336 * 8 7 5 33 33 H 1.08996 * 109.50585 * 180.88330 * 9 8 7 34 34 H 1.09002 * 109.53778 * 60.78325 * 9 8 7 35 35 H 1.08997 * 109.52174 * 297.74925 * 10 9 8 36 36 H 1.09003 * 109.57316 * 177.59550 * 10 9 8 37 37 H 1.08995 * 109.49945 * 182.40423 * 11 10 9 38 38 H 1.08993 * 109.53642 * 62.30515 * 11 10 9 39 39 H 1.09006 * 109.46740 * 62.34944 * 14 12 7 40 40 H 1.09003 * 109.46552 * 302.35728 * 14 12 7 41 41 H 0.97002 * 119.99861 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.41181 * 40.25492 * 23 2 1 43 43 H 1.09004 * 110.40514 * 277.81933 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 1 4.1496 -0.7686 -0.9364 7 7 3.7806 0.2283 -2.7602 8 6 2.8875 1.2502 -3.3210 9 6 3.1716 1.4131 -4.8159 10 6 4.6338 1.8238 -5.0108 11 6 5.5416 0.7670 -4.3755 12 6 5.1887 0.6229 -2.8934 13 1 5.3482 1.5752 -2.3877 14 6 6.0801 -0.4467 -2.2588 15 6 7.5213 -0.0147 -2.3439 16 1 7.7701 0.9631 -2.7291 17 6 8.5226 -0.8700 -1.9352 18 7 8.2196 -2.0607 -1.4662 19 14 10.3095 -0.3375 -2.0479 20 1 10.5168 0.8785 -1.2211 21 1 11.1838 -1.4299 -1.5504 22 1 10.6486 -0.0381 -3.4624 23 6 2.0013 -0.5953 -1.2528 24 1 -0.3634 0.5119 -0.8910 25 1 -0.3634 -1.0276 0.0023 26 1 -0.3633 0.5158 0.8889 27 1 2.0079 1.7916 1.0120 28 1 1.4098 2.0212 -0.6602 29 1 4.1483 1.1748 0.2933 30 1 3.6953 2.0993 -1.1697 31 1 3.0580 2.1996 -2.8134 32 1 1.8511 0.9437 -3.1796 33 1 2.5194 2.1827 -5.2286 34 1 2.9879 0.4680 -5.3270 35 1 4.8080 2.7881 -4.5335 36 1 4.8530 1.8996 -6.0759 37 1 6.5825 1.0750 -4.4735 38 1 5.3960 -0.1888 -4.8788 39 1 5.9512 -1.3894 -2.7908 40 1 5.8013 -0.5784 -1.2133 41 1 8.9240 -2.6625 -1.1790 42 1 1.4097 -0.2712 -2.1090 43 1 2.0077 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:12 Heat of formation + Delta-G solvation = -15.350878 kcal Electronic energy + Delta-G solvation = -20066.024864 eV Core-core repulsion = 17337.744895 eV Total energy + Delta-G solvation = -2728.279968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22353 -38.67362 -35.36404 -34.59791 -32.91833 -31.37709 -29.40908 -28.84999 -26.32521 -25.47963 -24.54945 -22.52267 -21.77844 -21.33965 -19.74572 -18.57945 -17.43104 -16.95900 -16.50355 -16.03064 -15.46934 -15.33467 -15.15760 -14.87398 -14.61451 -14.08859 -13.93865 -13.83791 -13.55863 -13.28867 -13.04617 -12.65600 -12.56440 -12.53042 -12.39124 -12.27417 -12.19871 -12.04946 -11.83628 -11.55045 -11.43657 -11.31060 -10.90960 -10.75441 -10.44870 -9.45526 -9.06394 -8.16722 -6.26207 1.39627 1.42308 1.49974 2.41151 2.85417 3.16589 3.29089 3.65348 3.80950 3.97209 4.06528 4.10463 4.14772 4.30163 4.34560 4.44511 4.52060 4.57237 4.60213 4.63185 4.66797 4.77893 4.85046 4.90109 4.97738 5.01717 5.06002 5.08419 5.14390 5.16022 5.24819 5.31906 5.44971 5.46903 5.57464 5.70979 5.80085 5.82987 6.08198 6.18270 6.42951 6.43672 6.89579 7.41620 8.95225 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.006617 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.573845 B = 4230.305010 C = 5084.010893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.046 3.954 4 C -0.152 4.152 5 C 0.076 3.924 6 H 0.063 0.937 7 N -0.533 5.533 8 C 0.050 3.950 9 C -0.109 4.109 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.108 3.892 13 H 0.018 0.982 14 C 0.042 3.958 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.959 3.041 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.050 3.950 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.047 0.953 39 H -0.010 1.010 40 H -0.009 1.009 41 H 0.262 0.738 42 H 0.064 0.936 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.977 8.644 -2.496 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.082 4.082 4 C -0.192 4.192 5 C -0.033 4.033 6 H 0.081 0.919 7 N -0.257 5.257 8 C -0.077 4.077 9 C -0.147 4.147 10 C -0.153 4.153 11 C -0.136 4.136 12 C 0.000 4.000 13 H 0.036 0.964 14 C 0.004 3.996 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.784 3.216 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.078 4.078 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.829 7.754 -2.233 16.882 hybrid contribution 1.227 0.797 0.083 1.466 sum -13.602 8.551 -2.150 16.209 Atomic orbital electron populations 1.22548 0.86275 1.02839 1.01572 1.65332 1.09792 1.15659 1.35051 1.23014 0.93668 0.90062 1.01463 1.22866 0.97712 0.98737 0.99866 1.22407 0.96837 0.96302 0.87765 0.91852 1.62087 1.03431 1.43847 1.16374 1.22235 0.96854 0.92883 0.95725 1.21564 0.96193 1.02034 0.94864 1.21601 0.95188 0.97672 1.00853 1.21451 0.99082 0.98968 0.94116 1.21414 0.86462 0.95850 0.96261 0.96375 1.19002 0.93231 0.93542 0.93791 1.21520 0.92508 1.01069 1.41783 0.92286 1.25895 1.03790 0.94887 0.94953 1.70108 1.34279 1.08817 1.44084 0.85589 0.79186 0.77877 0.78933 1.19349 1.21034 1.19092 1.23084 0.93538 0.99874 0.91349 0.94566 0.90797 0.90181 0.89474 0.92589 0.92793 0.91195 0.95002 0.90029 0.89265 0.91798 0.92395 0.90640 0.92665 0.93372 0.99158 0.99122 0.92949 0.91791 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.53 127.69 1.22 1.52 16 2 N -0.53 -14.11 5.66 -907.61 -5.14 -19.25 16 3 C 0.05 1.14 6.49 86.45 0.56 1.70 16 4 C -0.15 -4.85 5.66 31.49 0.18 -4.67 16 5 C 0.08 2.74 2.79 45.81 0.13 2.86 16 6 H 0.06 2.84 5.79 -2.39 -0.01 2.83 16 7 N -0.53 -19.26 4.50 -840.84 -3.78 -23.05 16 8 C 0.05 1.40 4.75 86.32 0.41 1.81 16 9 C -0.11 -2.71 6.09 30.65 0.19 -2.52 16 10 C -0.12 -3.28 6.00 30.68 0.18 -3.09 16 11 C -0.10 -3.78 5.14 30.65 0.16 -3.62 16 12 C 0.11 4.58 1.60 44.94 0.07 4.65 16 13 H 0.02 0.80 7.13 -2.39 -0.02 0.78 16 14 C 0.04 2.24 4.17 29.85 0.12 2.37 16 15 C -0.53 -30.29 8.30 25.60 0.21 -30.08 16 16 H 0.06 3.23 7.07 -2.91 -0.02 3.21 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 19 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.05 1.45 5.98 86.45 0.52 1.97 16 24 H 0.04 0.62 7.97 -2.39 -0.02 0.60 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.21 7.97 -2.39 -0.02 1.19 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.21 5.23 -2.39 -0.01 2.19 16 31 H 0.03 0.88 6.25 -2.38 -0.01 0.87 16 32 H 0.08 2.00 5.86 -2.39 -0.01 1.99 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 2.29 6.90 -2.39 -0.02 2.27 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 40 H -0.01 -0.55 6.03 -2.39 -0.01 -0.56 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.06 1.68 5.52 -2.39 -0.01 1.67 16 43 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -64.81 315.87 -1.24 -66.05 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.96 Total: 13.46 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.41 Total: -26.50 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -8.64 Total: -99.87 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.81 -1.24 -66.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.694 kcal (2) G-P(sol) polarization free energy of solvation -64.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds