Wall clock time and date at job start Mon Mar 30 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48535 * 110.99460 * 2 1 4 4 C 1.54943 * 103.22476 * 200.27943 * 3 2 1 5 5 C 1.54592 * 102.92002 * 37.41471 * 4 3 2 6 6 H 1.09007 * 110.39068 * 97.00090 * 5 4 3 7 7 N 1.46895 * 110.31075 * 219.12326 * 5 4 3 8 8 C 1.46846 * 110.99656 * 59.82071 * 7 5 4 9 9 C 1.53046 * 109.52216 * 174.16188 * 8 7 5 10 10 C 1.53121 * 109.27706 * 59.18097 * 9 8 7 11 11 C 1.53117 * 109.15883 * 302.34380 * 10 9 8 12 12 C 1.46845 * 111.00260 * 295.61422 * 7 5 4 13 13 H 1.09006 * 109.46759 * 65.81490 * 12 7 5 14 14 C 1.53006 * 109.46281 * 305.85449 * 12 7 5 15 15 C 1.50694 * 109.47468 * 176.65578 * 14 12 7 16 16 H 1.08002 * 119.99789 * 356.68191 * 15 14 12 17 17 C 1.37880 * 119.99893 * 176.67258 * 15 14 12 18 18 N 1.31520 * 119.99512 * 180.02562 * 17 15 14 19 19 Si 1.86787 * 120.00131 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.47138 * 89.99591 * 19 17 15 21 21 H 1.48499 * 109.47075 * 209.99607 * 19 17 15 22 22 H 1.48503 * 109.47345 * 329.99651 * 19 17 15 23 23 C 1.47897 * 110.99904 * 242.60926 * 2 1 3 24 24 H 1.09003 * 109.46918 * 177.39587 * 1 2 3 25 25 H 1.09001 * 109.47475 * 297.39152 * 1 2 3 26 26 H 1.09000 * 109.47304 * 57.39673 * 1 2 3 27 27 H 1.08998 * 110.67108 * 318.71491 * 3 2 1 28 28 H 1.09002 * 110.66768 * 81.68242 * 3 2 1 29 29 H 1.09000 * 110.72119 * 279.05800 * 4 3 2 30 30 H 1.08999 * 110.72184 * 155.77820 * 4 3 2 31 31 H 1.09001 * 109.46604 * 294.17613 * 8 7 5 32 32 H 1.08994 * 109.46773 * 54.14389 * 8 7 5 33 33 H 1.09005 * 109.49940 * 179.11581 * 9 8 7 34 34 H 1.08999 * 109.50240 * 299.19633 * 9 8 7 35 35 H 1.08995 * 109.52388 * 62.24976 * 10 9 8 36 36 H 1.08997 * 109.52127 * 182.37675 * 10 9 8 37 37 H 1.08997 * 109.50439 * 177.59772 * 11 10 9 38 38 H 1.09000 * 109.50793 * 297.67491 * 11 10 9 39 39 H 1.09006 * 109.46403 * 296.65949 * 14 12 7 40 40 H 1.09001 * 109.46983 * 56.65214 * 14 12 7 41 41 H 0.96999 * 119.99278 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.92214 * 26.48830 * 23 2 1 43 43 H 1.09001 * 110.08140 * 265.28263 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2108 -0.5228 5 6 3.2982 0.1055 -1.5931 6 1 3.2141 0.5473 -2.5860 7 7 4.4420 -0.8147 -1.5405 8 6 4.5418 -1.4555 -0.2231 9 6 5.6501 -2.5105 -0.2501 10 6 6.9777 -1.8399 -0.6140 11 6 6.8322 -1.1392 -1.9677 12 6 5.6897 -0.1239 -1.8908 13 1 5.9176 0.6225 -1.1299 14 6 5.5276 0.5648 -3.2475 15 6 6.7782 1.3413 -3.5693 16 1 7.5847 1.3875 -2.8524 17 6 6.8931 1.9927 -4.7791 18 7 7.9849 2.6700 -5.0602 19 14 5.4982 1.9132 -6.0188 20 1 4.5611 3.0409 -5.7826 21 1 6.0515 2.0091 -7.3935 22 1 4.7727 0.6265 -5.8659 23 6 1.9990 -0.6352 -1.2259 24 1 -0.3633 -1.0266 -0.0467 25 1 -0.3634 0.4728 0.9124 26 1 -0.3634 0.5537 -0.8657 27 1 1.4236 2.0205 -0.6729 28 1 2.0013 1.7988 1.0091 29 1 4.1114 0.8837 0.2787 30 1 3.8121 2.1354 -0.9715 31 1 4.7751 -0.7029 0.5302 32 1 3.5927 -1.9320 0.0219 33 1 5.7344 -2.9750 0.7324 34 1 5.4103 -3.2713 -0.9929 35 1 7.2368 -1.1068 0.1497 36 1 7.7620 -2.5943 -0.6758 37 1 7.7610 -0.6239 -2.2124 38 1 6.6121 -1.8780 -2.7382 39 1 5.3580 -0.1869 -4.0184 40 1 4.6768 1.2452 -3.2101 41 1 8.0655 3.1285 -5.9111 42 1 1.2758 -0.5401 -2.0359 43 1 2.2117 -1.6880 -1.0400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:15 Heat of formation + Delta-G solvation = -14.447859 kcal Electronic energy + Delta-G solvation = -20138.404833 eV Core-core repulsion = 17410.164023 eV Total energy + Delta-G solvation = -2728.240810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19658 -38.70088 -35.33272 -34.59460 -33.16711 -31.43312 -29.38400 -29.22467 -26.36627 -25.13524 -24.51904 -22.40321 -21.86658 -21.20250 -19.80308 -19.02575 -17.45744 -16.95139 -16.36597 -15.84879 -15.63283 -15.29316 -15.09906 -14.94380 -14.61022 -14.57596 -13.99922 -13.88546 -13.68776 -13.16009 -13.05046 -12.79918 -12.52684 -12.45276 -12.32169 -12.19269 -12.05258 -12.03406 -11.82143 -11.53851 -11.47987 -11.41586 -10.94946 -10.88278 -10.65833 -9.41415 -9.07822 -8.28316 -6.30128 1.31785 1.34982 1.46787 2.35018 2.93941 3.06693 3.13091 3.67380 3.80983 3.96343 4.10009 4.11765 4.17385 4.29734 4.35410 4.42314 4.52696 4.57258 4.63326 4.66448 4.70850 4.77220 4.84215 4.87972 4.94244 5.03167 5.04608 5.10631 5.11076 5.16501 5.20867 5.25123 5.35816 5.41245 5.50773 5.59377 5.69577 5.85299 6.07044 6.21238 6.38467 6.40072 6.76611 7.33128 8.88206 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.007819 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.856265 B = 3580.101054 C = 4616.131669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.528 5.528 3 C 0.045 3.955 4 C -0.155 4.155 5 C 0.068 3.932 6 H 0.073 0.927 7 N -0.529 5.529 8 C 0.056 3.944 9 C -0.109 4.109 10 C -0.117 4.117 11 C -0.100 4.100 12 C 0.113 3.887 13 H 0.016 0.984 14 C 0.002 3.998 15 C -0.516 4.516 16 H 0.035 0.965 17 C 0.009 3.991 18 N -0.950 5.950 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.250 1.250 23 C 0.048 3.952 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.265 0.735 42 H 0.050 0.950 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -8.498 10.930 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.084 4.084 4 C -0.195 4.195 5 C -0.041 4.041 6 H 0.091 0.909 7 N -0.253 5.253 8 C -0.071 4.071 9 C -0.146 4.146 10 C -0.155 4.155 11 C -0.138 4.138 12 C 0.005 3.995 13 H 0.034 0.966 14 C -0.036 4.036 15 C -0.554 4.554 16 H 0.054 0.946 17 C -0.188 4.188 18 N -0.591 5.591 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.173 1.173 23 C -0.080 4.080 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.046 -9.080 10.922 19.976 hybrid contribution 0.003 1.747 -1.116 2.073 sum -14.043 -7.333 9.806 18.632 Atomic orbital electron populations 1.22567 0.86546 1.02720 1.01386 1.64777 1.09325 1.14751 1.36391 1.23140 0.93668 0.90126 1.01416 1.23076 0.97825 0.99295 0.99296 1.22631 0.91330 0.91787 0.98382 0.90872 1.62163 1.02647 1.31119 1.29347 1.22160 1.00070 0.96242 0.88618 1.21576 0.93295 0.97520 1.02229 1.21595 0.98486 0.99430 0.95941 1.21450 0.97067 0.97386 0.97871 1.21235 0.89114 0.93390 0.95757 0.96619 1.19561 0.95043 0.94689 0.94278 1.21337 1.02179 1.30197 1.01712 0.94628 1.25873 0.98118 0.94568 1.00256 1.70060 1.29279 1.35163 1.24601 0.85786 0.79753 0.79869 0.78049 1.19390 1.20978 1.17342 1.22897 0.93977 1.00048 0.91074 0.90430 0.90266 0.95334 0.93422 0.89094 0.91022 0.92456 0.95635 0.89133 0.89619 0.91327 0.93071 0.90870 0.93666 0.92445 0.96394 0.96828 0.92627 0.93122 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.40 127.69 1.20 1.48 16 2 N -0.53 -11.97 5.55 -909.15 -5.05 -17.02 16 3 C 0.04 1.05 6.56 86.65 0.57 1.62 16 4 C -0.16 -4.62 5.46 31.80 0.17 -4.45 16 5 C 0.07 2.13 2.63 45.79 0.12 2.25 16 6 H 0.07 2.60 6.06 -2.38 -0.01 2.59 16 7 N -0.53 -17.67 4.50 -840.91 -3.78 -21.46 16 8 C 0.06 1.56 4.75 86.33 0.41 1.97 16 9 C -0.11 -2.73 6.09 30.65 0.19 -2.54 16 10 C -0.12 -3.46 6.00 30.67 0.18 -3.28 16 11 C -0.10 -3.85 5.15 30.65 0.16 -3.69 16 12 C 0.11 4.59 1.56 44.94 0.07 4.66 16 13 H 0.02 0.69 7.36 -2.38 -0.02 0.68 16 14 C 0.00 0.09 3.25 29.85 0.10 0.19 16 15 C -0.52 -29.83 8.89 25.60 0.23 -29.60 16 16 H 0.04 2.26 7.31 -2.91 -0.02 2.24 16 17 C 0.01 0.50 5.47 84.65 0.46 0.97 16 18 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 19 Si 0.94 45.14 27.53 68.60 1.89 47.03 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.25 -11.34 6.45 99.48 0.64 -10.70 16 23 C 0.05 1.20 5.74 86.45 0.50 1.70 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.03 0.49 8.00 -2.39 -0.02 0.47 16 27 H 0.05 1.09 7.96 -2.39 -0.02 1.07 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.21 5.70 -2.39 -0.01 2.20 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.03 0.75 6.20 -2.39 -0.01 0.73 16 32 H 0.09 2.26 5.96 -2.39 -0.01 2.25 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 2.00 6.93 -2.39 -0.02 1.99 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.02 0.88 6.97 -2.38 -0.02 0.86 16 40 H 0.01 0.64 5.68 -2.39 -0.01 0.63 16 41 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.05 1.21 7.73 -2.39 -0.02 1.19 16 43 H 0.09 2.29 6.21 -2.39 -0.01 2.27 16 Total: -1.00 -64.33 312.85 -1.39 -65.72 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.90 Total: 14.16 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 4.36 Total: -28.74 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -8.53 Total: -98.18 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.89 Total: 47.03 kcal Total: -64.33 -1.39 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.271 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds