Wall clock time and date at job start Mon Mar 30 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48560 * 111.00043 * 2 1 4 4 C 1.54379 * 104.59403 * 200.95897 * 3 2 1 5 5 C 1.54252 * 105.06059 * 23.84985 * 4 3 2 6 6 H 1.09002 * 110.32393 * 240.99938 * 5 4 3 7 7 N 1.46904 * 110.32404 * 118.89834 * 5 4 3 8 8 C 1.46845 * 110.99952 * 300.16327 * 7 5 4 9 9 C 1.53037 * 109.52663 * 174.15989 * 8 7 5 10 10 C 1.53120 * 109.27318 * 59.18137 * 9 8 7 11 11 C 1.53120 * 109.16126 * 302.34588 * 10 9 8 12 12 C 1.46848 * 110.99822 * 175.95876 * 7 5 4 13 13 H 1.09002 * 109.45753 * 65.82718 * 12 7 5 14 14 C 1.52998 * 109.46232 * 305.84953 * 12 7 5 15 15 C 1.50699 * 109.47435 * 302.89203 * 14 12 7 16 16 H 1.07995 * 119.99829 * 4.01697 * 15 14 12 17 17 C 1.37874 * 120.00275 * 184.01598 * 15 14 12 18 18 N 1.31517 * 119.99868 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00088 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47652 * 90.00038 * 19 17 15 21 21 H 1.48503 * 109.46853 * 210.00005 * 19 17 15 22 22 H 1.48493 * 109.47138 * 329.99388 * 19 17 15 23 23 C 1.48552 * 111.00247 * 244.57526 * 2 1 3 24 24 H 1.08995 * 109.47073 * 59.87905 * 1 2 3 25 25 H 1.08999 * 109.46558 * 179.87838 * 1 2 3 26 26 H 1.08999 * 109.47228 * 299.87813 * 1 2 3 27 27 H 1.08994 * 110.41354 * 82.17602 * 3 2 1 28 28 H 1.09007 * 110.40778 * 319.73528 * 3 2 1 29 29 H 1.08997 * 110.32225 * 264.94901 * 4 3 2 30 30 H 1.09001 * 110.40921 * 142.79457 * 4 3 2 31 31 H 1.09007 * 109.46110 * 54.14761 * 8 7 5 32 32 H 1.09002 * 109.46748 * 294.18226 * 8 7 5 33 33 H 1.08998 * 109.50384 * 299.24436 * 9 8 7 34 34 H 1.08997 * 109.50603 * 179.12364 * 9 8 7 35 35 H 1.09005 * 109.51736 * 182.44539 * 10 9 8 36 36 H 1.08996 * 109.52385 * 62.25313 * 10 9 8 37 37 H 1.08996 * 109.50139 * 297.71343 * 11 10 9 38 38 H 1.09007 * 109.49973 * 177.60135 * 11 10 9 39 39 H 1.09007 * 109.47049 * 62.89511 * 14 12 7 40 40 H 1.08997 * 109.47061 * 182.88838 * 14 12 7 41 41 H 0.96997 * 119.99975 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.41136 * 40.26328 * 23 2 1 43 43 H 1.08997 * 110.41463 * 277.81842 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 1 4.1497 -0.7686 -0.9360 7 7 3.7808 0.2282 -2.7600 8 6 2.8112 1.1543 -3.3586 9 6 3.2726 1.5384 -4.7664 10 6 3.3936 0.2739 -5.6212 11 6 4.3723 -0.6942 -4.9508 12 6 3.8790 -1.0136 -3.5378 13 1 2.8981 -1.4856 -3.5936 14 6 4.8647 -1.9651 -2.8567 15 6 6.2024 -1.2857 -2.7149 16 1 6.3190 -0.2549 -3.0150 17 6 7.2774 -1.9802 -2.2020 18 7 7.1353 -3.2354 -1.8360 19 14 8.9353 -1.1378 -2.0256 20 1 9.0267 -0.4998 -0.6878 21 1 10.0190 -2.1429 -2.1697 22 1 9.0784 -0.1013 -3.0792 23 6 2.0014 -0.5954 -1.2525 24 1 -0.3633 0.5157 -0.8889 25 1 -0.3632 -1.0277 -0.0022 26 1 -0.3633 0.5119 0.8911 27 1 2.0078 1.7917 1.0120 28 1 1.4098 2.0212 -0.6603 29 1 4.1483 1.1749 0.2935 30 1 3.6955 2.0993 -1.1695 31 1 2.7378 2.0511 -2.7432 32 1 1.8353 0.6720 -3.4152 33 1 4.2421 2.0332 -4.7092 34 1 2.5448 2.2136 -5.2163 35 1 3.7636 0.5380 -6.6119 36 1 2.4162 -0.2002 -5.7108 37 1 5.3591 -0.2345 -4.8966 38 1 4.4303 -1.6141 -5.5327 39 1 4.4873 -2.2340 -1.8700 40 1 4.9767 -2.8655 -3.4606 41 1 7.8915 -3.7238 -1.4748 42 1 1.4099 -0.2714 -2.1088 43 1 2.0080 -1.6832 -1.1836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259659939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:19 Heat of formation + Delta-G solvation = 6.690240 kcal Electronic energy + Delta-G solvation = -20382.488357 eV Core-core repulsion = 17655.164163 eV Total energy + Delta-G solvation = -2727.324193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81693 -37.31214 -33.42471 -33.04536 -31.17162 -30.18794 -27.86636 -26.81653 -25.32516 -23.55252 -23.19004 -21.09358 -20.52374 -19.73045 -18.34983 -16.30931 -15.83778 -15.70110 -14.54487 -14.43132 -14.25763 -14.11797 -13.80335 -13.41155 -13.17576 -12.86680 -12.42518 -12.20658 -11.98031 -11.57987 -11.33926 -11.22395 -11.09303 -11.00707 -10.86485 -10.70348 -10.64212 -10.49729 -10.30645 -10.09625 -9.82941 -9.55048 -9.02785 -8.87923 -8.33514 -8.22134 -7.42532 -5.86156 -3.83632 3.41085 3.47438 3.51238 4.15502 4.57638 4.63083 5.01274 5.03238 5.23811 5.32084 5.35911 5.41252 5.49107 5.50345 5.57040 5.61044 5.79467 5.80245 5.84771 5.86992 5.98935 6.04594 6.16665 6.17346 6.18171 6.30766 6.37389 6.44644 6.50431 6.57565 6.68085 6.80557 6.93896 7.06341 7.15056 7.21742 7.61621 7.72123 7.96340 8.03868 8.16661 8.61859 9.24454 9.78488 11.25862 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.008128 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.072609 B = 3443.945488 C = 4184.243384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.512 5.512 3 C 0.031 3.969 4 C -0.119 4.119 5 C 0.087 3.913 6 H 0.117 0.883 7 N -0.501 5.501 8 C 0.048 3.952 9 C -0.112 4.112 10 C -0.122 4.122 11 C -0.103 4.103 12 C 0.096 3.904 13 H 0.010 0.990 14 C 0.024 3.976 15 C -0.486 4.486 16 H 0.067 0.933 17 C 0.050 3.950 18 N -0.903 5.903 19 Si 0.887 3.113 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.275 1.275 23 C -0.002 4.002 24 H 0.022 0.978 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.021 0.979 41 H 0.257 0.743 42 H 0.044 0.956 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 8.718 -1.201 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.236 5.236 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.023 4.023 6 H 0.135 0.865 7 N -0.224 5.224 8 C -0.080 4.080 9 C -0.150 4.150 10 C -0.160 4.160 11 C -0.141 4.141 12 C -0.012 4.012 13 H 0.028 0.972 14 C -0.013 4.013 15 C -0.524 4.524 16 H 0.085 0.915 17 C -0.149 4.149 18 N -0.544 5.544 19 Si 0.716 3.284 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.200 1.200 23 C -0.132 4.132 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.786 8.496 -0.680 13.747 hybrid contribution -0.282 0.378 -0.528 0.708 sum -11.068 8.874 -1.208 14.238 Atomic orbital electron populations 1.22476 0.88862 1.01836 1.00172 1.65322 1.07369 1.15318 1.35607 1.23156 0.96088 0.89929 1.00503 1.22401 0.95122 0.98495 0.99663 1.22520 0.93702 0.96887 0.89150 0.86508 1.62084 1.45546 1.14108 1.00709 1.22153 0.93540 0.96831 0.95517 1.21532 1.01412 0.97366 0.94720 1.21642 0.99459 0.96549 0.98308 1.21557 0.99783 0.98114 0.94639 1.21712 0.96773 0.89436 0.93264 0.97169 1.19277 0.93562 0.93328 0.95162 1.21177 0.93422 0.98084 1.39760 0.91492 1.25023 0.98764 0.94808 0.96310 1.69968 1.30945 1.09141 1.44369 0.86665 0.84269 0.79114 0.78327 1.20988 1.21750 1.20046 1.23927 0.98150 1.00732 0.90356 0.95917 0.91527 0.91667 0.90589 0.94549 0.90744 0.90533 0.91630 0.96058 0.91193 0.92891 0.92736 0.93385 0.89965 0.92520 0.96614 0.96087 0.93381 0.93764 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.53 60.07 0.57 0.76 16 2 N -0.51 -7.70 5.66 -238.24 -1.35 -9.05 16 3 C 0.03 0.43 6.49 -2.18 -0.01 0.41 16 4 C -0.12 -1.86 6.06 -25.35 -0.15 -2.01 16 5 C 0.09 1.58 2.71 -66.33 -0.18 1.40 16 6 H 0.12 2.59 5.84 -51.93 -0.30 2.29 16 7 N -0.50 -9.31 3.80 -217.11 -0.82 -10.14 16 8 C 0.05 0.74 4.71 -3.83 -0.02 0.72 16 9 C -0.11 -1.63 6.09 -26.65 -0.16 -1.79 16 10 C -0.12 -1.85 6.00 -26.61 -0.16 -2.01 16 11 C -0.10 -1.93 5.17 -26.65 -0.14 -2.07 16 12 C 0.10 1.93 1.83 -67.72 -0.12 1.81 16 13 H 0.01 0.21 7.59 -51.93 -0.39 -0.19 16 14 C 0.02 0.59 4.19 -27.88 -0.12 0.47 16 15 C -0.49 -13.10 7.68 -34.44 -0.26 -13.36 16 16 H 0.07 1.81 6.84 -52.49 -0.36 1.45 16 17 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 18 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.00 -0.03 5.05 -2.19 -0.01 -0.05 16 24 H 0.02 0.26 7.97 -51.93 -0.41 -0.15 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.47 7.97 -51.93 -0.41 0.05 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.16 6.46 -51.93 -0.34 0.83 16 31 H 0.07 0.96 6.18 -51.92 -0.32 0.64 16 32 H 0.02 0.34 6.06 -51.93 -0.31 0.02 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.71 6.87 -51.93 -0.36 1.35 16 38 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.02 0.42 6.37 -51.92 -0.33 0.09 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.04 0.72 5.33 -51.93 -0.28 0.44 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -28.65 315.95 -10.17 -38.82 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.61 Total: -0.69 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.87 Total: -14.38 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.44 Total: -45.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.65 -10.17 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.510 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds