Wall clock time and date at job start Mon Mar 30 2020 04:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48560 * 111.00043 * 2 1 4 4 C 1.54379 * 104.59403 * 200.95897 * 3 2 1 5 5 C 1.54252 * 105.06059 * 23.84985 * 4 3 2 6 6 H 1.09002 * 110.32393 * 240.99938 * 5 4 3 7 7 N 1.46904 * 110.32404 * 118.89834 * 5 4 3 8 8 C 1.46845 * 110.99952 * 300.16327 * 7 5 4 9 9 C 1.53037 * 109.52663 * 174.15989 * 8 7 5 10 10 C 1.53120 * 109.27318 * 59.18137 * 9 8 7 11 11 C 1.53120 * 109.16126 * 302.34588 * 10 9 8 12 12 C 1.46848 * 110.99822 * 175.95876 * 7 5 4 13 13 H 1.09002 * 109.45753 * 65.82718 * 12 7 5 14 14 C 1.52998 * 109.46232 * 305.84953 * 12 7 5 15 15 C 1.50699 * 109.47435 * 302.89203 * 14 12 7 16 16 H 1.07995 * 119.99829 * 4.01697 * 15 14 12 17 17 C 1.37874 * 120.00275 * 184.01598 * 15 14 12 18 18 N 1.31517 * 119.99868 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00088 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47652 * 90.00038 * 19 17 15 21 21 H 1.48503 * 109.46853 * 210.00005 * 19 17 15 22 22 H 1.48493 * 109.47138 * 329.99388 * 19 17 15 23 23 C 1.48552 * 111.00247 * 244.57526 * 2 1 3 24 24 H 1.08995 * 109.47073 * 59.87905 * 1 2 3 25 25 H 1.08999 * 109.46558 * 179.87838 * 1 2 3 26 26 H 1.08999 * 109.47228 * 299.87813 * 1 2 3 27 27 H 1.08994 * 110.41354 * 82.17602 * 3 2 1 28 28 H 1.09007 * 110.40778 * 319.73528 * 3 2 1 29 29 H 1.08997 * 110.32225 * 264.94901 * 4 3 2 30 30 H 1.09001 * 110.40921 * 142.79457 * 4 3 2 31 31 H 1.09007 * 109.46110 * 54.14761 * 8 7 5 32 32 H 1.09002 * 109.46748 * 294.18226 * 8 7 5 33 33 H 1.08998 * 109.50384 * 299.24436 * 9 8 7 34 34 H 1.08997 * 109.50603 * 179.12364 * 9 8 7 35 35 H 1.09005 * 109.51736 * 182.44539 * 10 9 8 36 36 H 1.08996 * 109.52385 * 62.25313 * 10 9 8 37 37 H 1.08996 * 109.50139 * 297.71343 * 11 10 9 38 38 H 1.09007 * 109.49973 * 177.60135 * 11 10 9 39 39 H 1.09007 * 109.47049 * 62.89511 * 14 12 7 40 40 H 1.08997 * 109.47061 * 182.88838 * 14 12 7 41 41 H 0.96997 * 119.99975 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.41136 * 40.26328 * 23 2 1 43 43 H 1.08997 * 110.41463 * 277.81842 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 1 4.1497 -0.7686 -0.9360 7 7 3.7808 0.2282 -2.7600 8 6 2.8112 1.1543 -3.3586 9 6 3.2726 1.5384 -4.7664 10 6 3.3936 0.2739 -5.6212 11 6 4.3723 -0.6942 -4.9508 12 6 3.8790 -1.0136 -3.5378 13 1 2.8981 -1.4856 -3.5936 14 6 4.8647 -1.9651 -2.8567 15 6 6.2024 -1.2857 -2.7149 16 1 6.3190 -0.2549 -3.0150 17 6 7.2774 -1.9802 -2.2020 18 7 7.1353 -3.2354 -1.8360 19 14 8.9353 -1.1378 -2.0256 20 1 9.0267 -0.4998 -0.6878 21 1 10.0190 -2.1429 -2.1697 22 1 9.0784 -0.1013 -3.0792 23 6 2.0014 -0.5954 -1.2525 24 1 -0.3633 0.5157 -0.8889 25 1 -0.3632 -1.0277 -0.0022 26 1 -0.3633 0.5119 0.8911 27 1 2.0078 1.7917 1.0120 28 1 1.4098 2.0212 -0.6603 29 1 4.1483 1.1749 0.2935 30 1 3.6955 2.0993 -1.1695 31 1 2.7378 2.0511 -2.7432 32 1 1.8353 0.6720 -3.4152 33 1 4.2421 2.0332 -4.7092 34 1 2.5448 2.2136 -5.2163 35 1 3.7636 0.5380 -6.6119 36 1 2.4162 -0.2002 -5.7108 37 1 5.3591 -0.2345 -4.8966 38 1 4.4303 -1.6141 -5.5327 39 1 4.4873 -2.2340 -1.8700 40 1 4.9767 -2.8655 -3.4606 41 1 7.8915 -3.7238 -1.4748 42 1 1.4099 -0.2714 -2.1088 43 1 2.0080 -1.6832 -1.1836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259659939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:18 Heat of formation + Delta-G solvation = -12.052342 kcal Electronic energy + Delta-G solvation = -20383.301096 eV Core-core repulsion = 17655.164163 eV Total energy + Delta-G solvation = -2728.136933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19301 -38.61990 -35.25746 -34.46642 -32.93195 -31.44579 -29.21397 -28.57016 -26.52808 -25.41897 -24.52167 -22.31716 -22.07577 -21.06195 -19.89665 -18.19653 -17.35833 -16.98390 -16.42722 -15.85584 -15.58684 -15.40142 -15.12021 -14.72710 -14.59549 -14.25896 -14.02649 -13.68440 -13.32201 -13.08336 -12.88124 -12.73328 -12.61122 -12.50802 -12.39449 -12.20285 -12.11001 -11.92212 -11.89402 -11.54440 -11.44325 -11.01315 -10.98792 -10.69453 -10.39650 -9.46044 -8.89454 -8.06308 -6.09597 1.42972 1.43603 1.54226 2.49476 2.92388 3.25135 3.35813 3.75210 3.80083 3.98116 4.11038 4.14990 4.21314 4.29591 4.37931 4.47371 4.54230 4.55588 4.59656 4.64518 4.72473 4.82170 4.86256 4.91514 4.94986 5.05051 5.08110 5.10329 5.17617 5.25491 5.33139 5.37997 5.42608 5.52375 5.64284 5.72811 5.81528 5.93372 6.07766 6.34216 6.51395 6.60959 7.05258 7.56076 9.06309 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.008128 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.072609 B = 3443.945488 C = 4184.243384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.040 3.960 4 C -0.114 4.114 5 C 0.085 3.915 6 H 0.064 0.936 7 N -0.514 5.514 8 C 0.049 3.951 9 C -0.109 4.109 10 C -0.114 4.114 11 C -0.102 4.102 12 C 0.106 3.894 13 H 0.013 0.987 14 C 0.032 3.968 15 C -0.480 4.480 16 H 0.066 0.934 17 C -0.007 4.007 18 N -0.943 5.943 19 Si 0.953 3.047 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.265 1.265 23 C 0.011 3.989 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.049 0.951 39 H -0.011 1.011 40 H -0.012 1.012 41 H 0.256 0.744 42 H 0.054 0.946 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 11.532 -1.814 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.256 5.256 3 C -0.087 4.087 4 C -0.152 4.152 5 C -0.025 4.025 6 H 0.082 0.918 7 N -0.238 5.238 8 C -0.079 4.079 9 C -0.147 4.147 10 C -0.152 4.152 11 C -0.140 4.140 12 C -0.002 4.002 13 H 0.030 0.970 14 C -0.005 4.005 15 C -0.519 4.519 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.585 5.585 19 Si 0.779 3.221 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.189 1.189 23 C -0.119 4.119 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.160 11.333 -1.297 16.673 hybrid contribution 0.108 -0.537 -0.306 0.627 sum -12.052 10.796 -1.603 16.260 Atomic orbital electron populations 1.22535 0.86805 1.02347 1.01563 1.65288 1.09425 1.16317 1.34534 1.23144 0.94397 0.89412 1.01793 1.22355 0.96771 0.97101 0.99001 1.22318 0.93514 0.97342 0.89316 0.91769 1.62020 1.47562 1.13482 1.00727 1.22255 0.92821 0.96383 0.96395 1.21553 1.01968 0.97335 0.93853 1.21583 0.98738 0.95890 0.98945 1.21491 0.99722 0.98845 0.93895 1.21428 0.95287 0.89532 0.93932 0.96961 1.19103 0.94447 0.93285 0.93673 1.21388 0.94164 0.97868 1.38444 0.91543 1.25849 1.02639 0.95417 0.96363 1.70110 1.31931 1.10721 1.45783 0.85625 0.79762 0.78187 0.78511 1.20573 1.21613 1.18889 1.23661 0.97227 0.99311 0.91685 0.94899 0.91604 0.89743 0.88936 0.92636 0.91800 0.89620 0.89983 0.95456 0.92086 0.89454 0.90775 0.92259 0.92360 0.93201 0.99292 0.99327 0.93515 0.92808 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.53 127.69 1.22 1.56 16 2 N -0.53 -15.17 5.66 -907.65 -5.14 -20.31 16 3 C 0.04 0.99 6.49 86.45 0.56 1.55 16 4 C -0.11 -3.45 6.06 31.49 0.19 -3.26 16 5 C 0.08 3.15 2.71 45.81 0.12 3.27 16 6 H 0.06 3.05 5.84 -2.39 -0.01 3.04 16 7 N -0.51 -18.97 3.80 -840.82 -3.19 -22.16 16 8 C 0.05 1.38 4.71 86.33 0.41 1.79 16 9 C -0.11 -2.79 6.09 30.65 0.19 -2.60 16 10 C -0.11 -3.15 6.00 30.67 0.18 -2.97 16 11 C -0.10 -3.79 5.17 30.65 0.16 -3.63 16 12 C 0.11 4.38 1.83 44.94 0.08 4.47 16 13 H 0.01 0.51 7.59 -2.39 -0.02 0.49 16 14 C 0.03 1.69 4.19 29.85 0.13 1.81 16 15 C -0.48 -26.84 7.68 25.60 0.20 -26.64 16 16 H 0.07 3.67 6.84 -2.91 -0.02 3.65 16 17 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 18 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 19 Si 0.95 45.80 29.54 68.60 2.03 47.82 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.01 0.36 5.05 86.45 0.44 0.80 16 24 H 0.03 0.66 7.97 -2.39 -0.02 0.64 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.18 7.97 -2.38 -0.02 1.16 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.42 6.46 -2.39 -0.02 2.40 16 31 H 0.08 2.08 6.18 -2.38 -0.01 2.07 16 32 H 0.03 0.76 6.06 -2.39 -0.01 0.75 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 2.44 6.87 -2.39 -0.02 2.42 16 38 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 39 H -0.01 -0.64 6.37 -2.38 -0.02 -0.65 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.05 1.65 5.33 -2.39 -0.01 1.64 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.33 315.95 -0.73 -65.06 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.96 Total: 11.64 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.33 Total: -23.81 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -8.04 Total: -100.71 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -64.33 -0.73 -65.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259659939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.010 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds