Wall clock time and date at job start Mon Mar 30 2020 04:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47898 * 111.00379 * 2 1 4 4 C 1.53991 * 107.06201 * 145.84197 * 3 2 1 5 5 C 1.54596 * 105.14044 * 358.77648 * 4 3 2 6 6 H 1.09004 * 110.72488 * 96.57433 * 5 4 3 7 7 N 1.46902 * 110.72945 * 219.68374 * 5 4 3 8 8 C 1.46846 * 110.99617 * 304.20956 * 7 5 4 9 9 C 1.53040 * 109.51964 * 174.15808 * 8 7 5 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.52993 * 109.52330 * 182.43958 * 10 9 8 12 12 C 1.50698 * 109.47494 * 294.68226 * 11 10 9 13 13 H 1.08003 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00535 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99627 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47065 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47541 * 119.99684 * 16 14 12 19 19 H 1.48501 * 109.46975 * 239.99725 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 21 21 C 1.46846 * 111.00204 * 179.97438 * 7 5 4 22 22 C 1.48543 * 111.00027 * 117.39591 * 2 1 3 23 23 H 1.08999 * 109.47176 * 59.87298 * 1 2 3 24 24 H 1.08999 * 109.47399 * 179.87486 * 1 2 3 25 25 H 1.09001 * 109.47466 * 299.87603 * 1 2 3 26 26 H 1.09001 * 109.91488 * 26.48835 * 3 2 1 27 27 H 1.08998 * 109.91797 * 265.19511 * 3 2 1 28 28 H 1.09001 * 110.31315 * 239.86004 * 4 3 2 29 29 H 1.09005 * 110.31153 * 117.68954 * 4 3 2 30 30 H 1.08996 * 109.46231 * 294.17554 * 8 7 5 31 31 H 1.09004 * 109.46418 * 54.14394 * 8 7 5 32 32 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 33 33 H 1.09001 * 109.53370 * 179.14510 * 9 8 7 34 34 H 1.09003 * 109.56984 * 62.28008 * 10 9 8 35 35 H 1.09007 * 109.47317 * 54.68551 * 11 10 9 36 36 H 1.09000 * 109.47026 * 174.68099 * 11 10 9 37 37 H 0.96997 * 119.99785 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.49853 * 297.70868 * 20 10 9 39 39 H 1.08994 * 109.53481 * 177.61659 * 20 10 9 40 40 H 1.09001 * 109.45990 * 305.85570 * 21 7 5 41 41 H 1.08999 * 109.46398 * 65.83493 * 21 7 5 42 42 H 1.09004 * 110.66343 * 81.83950 * 22 2 1 43 43 H 1.08997 * 110.66440 * 318.71491 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0930 1.3155 6 1 4.1140 -0.6533 0.6580 7 7 3.9385 -0.1293 2.7001 8 6 5.1992 0.6119 2.8322 9 6 5.6023 0.6765 4.3072 10 6 5.7657 -0.7461 4.8494 11 6 6.1093 -0.6890 6.3392 12 6 7.4594 -0.0442 6.5191 13 1 8.0165 0.2918 5.6571 14 6 7.9834 0.1169 7.7842 15 7 7.3048 -0.2918 8.8340 16 14 9.6566 0.9168 8.0072 17 1 10.2099 1.2856 6.6794 18 1 9.5147 2.1374 8.8410 19 1 10.5758 -0.0370 8.6784 20 6 4.4538 -1.5115 4.6557 21 6 4.0835 -1.5127 3.1709 22 6 2.0013 -0.6381 1.2312 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3634 -1.0276 -0.0022 25 1 -0.3634 0.5119 0.8911 26 1 1.2758 2.0561 0.4571 27 1 2.2123 1.6966 -1.0212 28 1 3.2136 2.0429 1.6766 29 1 4.1470 1.6454 0.2024 30 1 5.9796 0.1054 2.2643 31 1 5.0681 1.6231 2.4469 32 1 4.8287 1.1952 4.8735 33 1 6.5459 1.2136 4.4039 34 1 6.5661 -1.2527 4.3101 35 1 5.3542 -0.1037 6.8641 36 1 6.1325 -1.7002 6.7457 37 1 7.6736 -0.1788 9.7239 38 1 3.6622 -1.0273 5.2275 39 1 4.5763 -2.5380 5.0010 40 1 3.1422 -2.0443 3.0314 41 1 4.8690 -2.0097 2.6016 42 1 2.0040 -1.7236 1.1316 43 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:52 Heat of formation + Delta-G solvation = -8.116480 kcal Electronic energy + Delta-G solvation = -19245.038896 eV Core-core repulsion = 16517.072635 eV Total energy + Delta-G solvation = -2727.966261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68670 -37.78349 -34.42891 -32.46168 -31.07190 -30.35085 -28.78525 -27.12124 -25.35684 -23.69785 -22.70129 -21.16942 -20.74119 -19.94829 -18.91432 -16.59403 -16.18892 -16.07048 -14.79695 -14.52566 -14.37201 -14.28179 -13.78316 -13.47151 -13.26200 -13.21789 -12.92876 -12.35018 -11.96684 -11.85736 -11.71615 -11.57394 -11.28770 -11.18570 -11.01361 -10.85581 -10.71449 -10.61224 -10.52502 -10.22073 -9.88080 -9.50843 -9.02293 -8.83990 -8.63365 -8.31221 -8.08163 -5.95869 -3.97147 3.32492 3.40186 3.43806 3.70193 4.25371 4.48844 4.51249 4.59509 4.94735 5.14257 5.23525 5.24707 5.31312 5.39234 5.44553 5.47272 5.55035 5.62705 5.64079 5.72655 5.77416 5.83641 5.89456 5.94719 6.00518 6.03958 6.17428 6.27042 6.47193 6.59790 6.62138 6.73111 6.81019 7.00945 7.13478 7.22440 7.39751 7.41337 7.73037 7.89610 8.05282 8.48541 9.09766 9.66303 11.15545 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.004063 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.456887 B = 6889.099302 C = 7223.867827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.526 5.526 3 C 0.038 3.962 4 C -0.126 4.126 5 C 0.080 3.920 6 H 0.051 0.949 7 N -0.530 5.530 8 C 0.055 3.945 9 C -0.099 4.099 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.513 4.513 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.112 4.112 21 C 0.059 3.941 22 C 0.044 3.956 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.029 0.971 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.028 0.972 42 H 0.078 0.922 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 1.113 -16.568 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.250 5.250 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.030 4.030 6 H 0.069 0.931 7 N -0.255 5.255 8 C -0.072 4.072 9 C -0.137 4.137 10 C -0.100 4.100 11 C -0.009 4.009 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.149 4.149 21 C -0.069 4.069 22 C -0.084 4.084 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.096 0.904 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.363 1.054 -16.559 20.111 hybrid contribution 1.228 0.450 0.456 1.385 sum -10.135 1.505 -16.103 19.087 Atomic orbital electron populations 1.22498 0.87886 1.02117 1.00683 1.64708 1.08118 1.15160 1.36999 1.22840 0.95975 0.89852 1.00344 1.22503 0.97243 0.97055 0.99647 1.22465 0.95252 0.95794 0.89462 0.93087 1.62039 1.30213 1.14564 1.18685 1.22218 0.88769 0.97387 0.98854 1.21547 1.01405 0.98392 0.92351 1.21233 0.94440 0.94059 1.00277 1.19120 0.96257 0.96943 0.88615 1.21299 1.03115 1.38649 0.92075 0.92666 1.25023 0.97390 0.95893 0.96242 1.69978 1.37868 1.47597 0.98155 0.86599 0.84541 0.79138 0.78100 1.19797 1.21093 1.21132 1.21686 0.99166 1.00381 0.93698 1.22111 0.99483 0.88160 0.97111 1.23233 0.94728 0.99272 0.91142 0.91469 0.91339 0.95247 0.93623 0.90537 0.90038 0.91205 0.95507 0.91420 0.91940 0.90921 0.93070 0.96536 0.96789 0.93175 0.91685 0.92160 0.91654 0.95365 0.90367 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.40 60.06 0.56 0.71 16 2 N -0.53 -5.69 5.55 -238.72 -1.33 -7.02 16 3 C 0.04 0.38 6.70 -2.76 -0.02 0.36 16 4 C -0.13 -1.39 5.33 -25.38 -0.14 -1.53 16 5 C 0.08 0.99 2.76 -65.85 -0.18 0.81 16 6 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 7 N -0.53 -7.70 4.50 -224.47 -1.01 -8.71 16 8 C 0.06 0.85 5.21 -3.83 -0.02 0.83 16 9 C -0.10 -1.87 5.15 -26.65 -0.14 -2.00 16 10 C -0.08 -1.67 2.20 -90.50 -0.20 -1.87 16 11 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 12 C -0.51 -14.36 8.45 -34.44 -0.29 -14.66 16 13 H 0.06 1.51 7.08 -52.48 -0.37 1.13 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 21 C 0.06 0.87 5.35 -3.84 -0.02 0.85 16 22 C 0.04 0.51 5.18 -1.89 -0.01 0.50 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.03 0.26 8.00 -51.93 -0.42 -0.16 16 26 H 0.05 0.44 7.73 -51.93 -0.40 0.04 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.96 7.38 -51.93 -0.38 0.57 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.95 6.45 -51.93 -0.33 0.61 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.86 7.01 -51.93 -0.36 0.50 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 43 H 0.06 0.72 7.96 -51.93 -0.41 0.30 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -29.58 325.90 -10.61 -40.20 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -8.09 Total: -3.74 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.81 Total: -16.00 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -1.60 Total: -42.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.58 -10.61 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.079 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds